Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

34046733 .. 34047305

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAGGCTTGTGATTTACAGCGAAAAGGAAAGTTGGTGGACTTGGTTGATAAAACTTTGTCTAACAAGTATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAAAGTGCATCAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATCTGTTCCTCTGATCAGATTGAGGACATCAACGACCCCCATGTGAAGGAGATCGCACAGTTCGCAGTGTCGGAGTACAACAAGAAATCCGGGAAGAAGCTGGAGTTACAGAGCGTGGTGAAGGGCGAGACTCGGGTCGTCCCCGGCGAGAATTACAGGCTCGTCATCGCCGTCAAGGATAACTCGGCGGCGGCCAAGTACGAGGGCGTTGTGTATGAGAGGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATAGTCACATTGCACAAGTTGATTCCTCTGTTTCTATGGAAGTAACCTCGAGAGCATCCACACCATCCAATTTGATCAAAGGGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

190

Amino Acids

21.1

Weight (kDa)

5.32

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	72 - 151	5.2e-31	Aspartic acid proteinase inhibitor
Cystatin	PF00031	72 - 129	7.5e-13	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 386
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	3 cut(s)	272, 395, 565
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	317
Ama87I	CYCGRG	2 cut(s)	327, 499
AoxI	GGCC	2 cut(s)	140, 387
ApoI	RAATTY	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	286, 339
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	2 cut(s)	327, 499
BccI	CCATC	2 cut(s)	95, 523
BceAI	ACGGC	1 cut(s)	350
BclI	TGATCA	2 cut(s)	208, 525
BcnI	CCSGG	2 cut(s)	286, 339
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	432, 571
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	384, 387
BlsI	GCNGC	2 cut(s)	385, 388
Bme1390I	CCNGG	2 cut(s)	286, 339
BmeT110I	CYCGRG	2 cut(s)	327, 499
BmrFI	CCNGG	2 cut(s)	286, 339
BmsI	GCATC	3 cut(s)	64, 126, 515
BoxI	GACNNNNGTC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	286, 339
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	506, 515
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	128, 549
BseRI	GAGGAG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	142, 389
BsiHKCI	CYCGRG	2 cut(s)	327, 499
BsiSI	CCGG	2 cut(s)	285, 339
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	142, 389
BsoBI	CYCGRG	2 cut(s)	327, 499
Bsp143I	GATC	4 cut(s)	195, 208, 246, 525
BspACI	CCGC	2 cut(s)	383, 386
BspANI	GGCC	2 cut(s)	142, 389
BspCNI	CTCAG	2 cut(s)	129, 550
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	4 cut(s)	195, 208, 246, 525
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	137, 558
BstF5I	GGATG	2 cut(s)	506, 515
BstKTI	GATC	4 cut(s)	198, 211, 249, 528
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	195, 208, 246, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 257
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	284, 337
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	142, 389
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	506, 515
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	271, 394, 564
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	6 cut(s)	8, 86, 142, 295, 355, 389
CviKI_1	RGCY	6 cut(s)	8, 86, 142, 295, 355, 389
CviQI	GTAC	3 cut(s)	271, 394, 564
DdeI	CTNAG	2 cut(s)	137, 558
DpnI	GATC	4 cut(s)	197, 210, 248, 527
DpnII	GATC	4 cut(s)	195, 208, 246, 525
EaeI	YGGCCR	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	327, 499
FaeI	CATG	1 cut(s)	239
FaiI	YATR	7 cut(s)	72, 125, 149, 237, 411, 429, 488
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	235
FbaI	TGATCA	2 cut(s)	208, 525
Fnu4HI	GCNGC	2 cut(s)	384, 387
FokI	GGATG	2 cut(s)	493, 502
Fsp4HI	GCNGC	2 cut(s)	384, 387
FspBI	CTAG	2 cut(s)	432, 571
GluI	GCNGC	2 cut(s)	384, 387
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	142, 389
HapII	CCGG	2 cut(s)	285, 339
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	2 cut(s)	325, 473
HpaII	CCGG	2 cut(s)	285, 339
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	6 cut(s)	138, 154, 208, 213, 268, 559
Hpy188III	TCNNGA	2 cut(s)	97, 501
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	235, 310, 457
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	4, 77, 117, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 257
HpyF3I	CTNAG	2 cut(s)	137, 558
Hsp92II	CATG	1 cut(s)	239
Ksp22I	TGATCA	2 cut(s)	208, 525
Kzo9I	GATC	4 cut(s)	195, 208, 246, 525
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	4 cut(s)	281, 298, 337, 352
LweI	GCATC	3 cut(s)	64, 126, 515
MaeI	CTAG	2 cut(s)	432, 571
MaeIII	GTNAC	3 cut(s)	300, 455, 493
MalI	GATC	4 cut(s)	197, 210, 248, 527
MboI	GATC	4 cut(s)	195, 208, 246, 525
MboII	GAAGA	2 cut(s)	301, 548
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	5 cut(s)	100, 186, 346, 437, 520
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	132, 184, 211, 214, 391, 408, 487, 508
MspI	CCGG	2 cut(s)	285, 339
MspR9I	CCNGG	2 cut(s)	286, 339
MwoI	GCNNNNNNNGC	2 cut(s)	83, 257
NciI	CCSGG	2 cut(s)	286, 339
NdeII	GATC	4 cut(s)	195, 208, 246, 525
NlaIII	CATG	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 363
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	385, 388
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	3 cut(s)	272, 395, 565
RsaNI	GTAC	3 cut(s)	271, 394, 564
SatI	GCNGC	2 cut(s)	384, 387
Sau3AI	GATC	4 cut(s)	195, 208, 246, 525
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	286, 339
SetI	ASST	2 cut(s)	297, 500
SfaNI	GCATC	3 cut(s)	64, 126, 515
Sfr274I	CTCGAG	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	5 cut(s)	100, 186, 346, 437, 520
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	383, 386
SspMI	CTAG	2 cut(s)	432, 571
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	284, 337
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	450, 500
TasI	AATT	5 cut(s)	100, 186, 346, 437, 520
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	386, 389
TfiI	GAWTC	1 cut(s)	473
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	2 cut(s)	432, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.