Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

619660 .. 621184

Gene Structure 1525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCATCGTTATCGAACCTAGACCTGAGCTTCAACAGCTTAACGGGTAGAATCCCAGATTCTTTGAAGAACTTAAATTTGAGTTACATGTCCTTTTCAAACAATATGCTTTCTGGGAAAATTCCTGATTGGGTTATTCAAAATGCAGTCTGGAGTATGATGGATCTTTCATACAATAATTTTTCAAACCTAACCTTTAAACCGTCGCCCAAGTTAAAACTGAATTTGTTTTCCTGCTGTTGCAACTCCTCAACCTCTCTGCCAAATACGACAGACCCAGCTACGAAGAAGTATTGTGCCGGGGGAAAACATCATTCATTGTTTATAAATTGTGGTGGTGGGGAAACACTTGTTGATGGAAATGTTTATGATCAAGATAATGATACGTCACAGTTTTACCTGAGTCCAAAAGGAAACTGGGCTCGGAGTAGTACTGGAAGCACCGTGGATCTAGAGAATACAATTGGAAGCAATATATTCTTAAAAACAGTGAAATGTGGGCTTTCCTCTGAAGCAGTTTTATACAATAATGCTCGCACTTCTCCTGTTTATCTAAAATATTACGGGTTCTGTTTACGTAAAGGCAAATACAATGTAACACTTCACTTTGCTGAAATTGTTGATGATGACAATGATTACAGAAGTACAGATAAACGCATATTTGATGTATATATTCAGGTAATGTTTTTCTTGGTTTTGTCACCAGCACTCAGCACCCACCAATTTGCATTAGTATTGTTGCATGCTTTGTCATTTGAACCAAGTATGAATGGTCATTGGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.29

Weight (kDa)

6.98

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	106 - 227	5e-15	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AclWI	GGATC	2 cut(s)	171, 456
AcsI	RAATTY	3 cut(s)	76, 120, 223
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	433, 646
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	6 cut(s)	34, 67, 99, 140, 186, 758
AluBI	AGCT	3 cut(s)	30, 39, 281
AluI	AGCT	3 cut(s)	30, 39, 281
AlwI	GGATC	2 cut(s)	171, 456
ApoI	RAATTY	3 cut(s)	76, 120, 223
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	424
BccI	CCATC	2 cut(s)	154, 350
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	301
BfaI	CTAG	2 cut(s)	20, 452
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	300, 444
Bse1I	ACTGG	2 cut(s)	422, 439
BseDI	CCNNGG	2 cut(s)	300, 444
BseMII	CTCAG	3 cut(s)	17, 392, 724
BseNI	ACTGG	2 cut(s)	422, 439
BseRI	GAGGAG	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	163, 370, 448
BspCNI	CTCAG	3 cut(s)	18, 393, 723
BspPI	GGATC	2 cut(s)	171, 456
BsrI	ACTGG	2 cut(s)	422, 439
BssECI	CCNNGG	2 cut(s)	300, 444
BssMI	GATC	3 cut(s)	163, 370, 448
Bst4CI	ACNGT	4 cut(s)	204, 393, 445, 490
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	535, 744
BstDEI	CTNAG	3 cut(s)	26, 401, 710
BstDSI	CCRYGG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	166, 373, 451
BstMBI	GATC	3 cut(s)	163, 370, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	91, 746
BstSCI	CCNGG	1 cut(s)	299
BstSNI	TACGTA	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	163, 448
BstYI	RGATCY	2 cut(s)	163, 448
BtgI	CCRYGG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	535, 744
Csp6I	GTAC	2 cut(s)	432, 645
CviAII	CATG	2 cut(s)	88, 743
CviJI	RGCY	5 cut(s)	30, 39, 281, 422, 502
CviKI_1	RGCY	5 cut(s)	30, 39, 281, 422, 502
CviQI	GTAC	2 cut(s)	432, 645
DdeI	CTNAG	3 cut(s)	26, 401, 710
DpnI	GATC	3 cut(s)	165, 372, 450
DpnII	GATC	3 cut(s)	163, 370, 448
DraI	TTTAAA	1 cut(s)	199
Eco105I	TACGTA	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	2 cut(s)	91, 746
FatI	CATG	2 cut(s)	87, 742
FbaI	TGATCA	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	20, 452
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	172
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	91, 746
HinfI	GANTC	3 cut(s)	51, 59, 403
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	2 cut(s)	426, 511
Hpy188III	TCNNGA	4 cut(s)	125, 151, 374, 452
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	208
HpyCH4III	ACNGT	4 cut(s)	204, 393, 445, 490
HpyCH4IV	ACGT	2 cut(s)	386, 577
HpyCH4V	TGCA	4 cut(s)	146, 243, 728, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	3 cut(s)	26, 401, 710
HpySE526I	ACGT	2 cut(s)	386, 577
Hsp92II	CATG	2 cut(s)	91, 746
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	163, 370, 448
MaeI	CTAG	2 cut(s)	20, 452
MaeII	ACGT	2 cut(s)	386, 577
MaeIII	GTNAC	4 cut(s)	83, 387, 595, 699
MalI	GATC	3 cut(s)	165, 372, 450
MboI	GATC	3 cut(s)	163, 370, 448
MboII	GAAGA	2 cut(s)	79, 298
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	163, 448
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	8 cut(s)	76, 120, 178, 223, 328, 462, 615, 722
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	3 cut(s)	259, 265, 517
MseI	TTAA	5 cut(s)	41, 74, 198, 215, 482
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	163, 370, 448
NlaIII	CATG	2 cut(s)	91, 746
NmuCI	GTSAC	2 cut(s)	387, 699
NspI	RCATGY	2 cut(s)	91, 746
PaeI	GCATGC	1 cut(s)	746
PciI	ACATGT	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	51, 59
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	163, 448
RsaI	GTAC	2 cut(s)	433, 646
RsaNI	GTAC	2 cut(s)	432, 645
SaqAI	TTAA	5 cut(s)	41, 74, 198, 215, 482
Sau3AI	GATC	3 cut(s)	163, 370, 448
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	424
SnaBI	TACGTA	1 cut(s)	578
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	8 cut(s)	76, 120, 178, 223, 328, 462, 615, 722
SspI	AATATT	1 cut(s)	560
SspMI	CTAG	2 cut(s)	20, 452
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	204, 393, 445, 490
TaiI	ACGT	2 cut(s)	389, 580
TaqI	TCGA	1 cut(s)	14
TasI	AATT	8 cut(s)	76, 120, 178, 223, 328, 462, 615, 722
TatI	WGTACW	2 cut(s)	431, 644
TfiI	GAWTC	2 cut(s)	51, 59
Tru1I	TTAA	5 cut(s)	41, 74, 198, 215, 482
Tru9I	TTAA	5 cut(s)	41, 74, 198, 215, 482
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	387, 699
Tsp45I	GTSAC	2 cut(s)	387, 699
TspDTI	ATGAA	3 cut(s)	159, 306, 782
TspRI	CASTG	1 cut(s)	495
XapI	RAATTY	3 cut(s)	76, 120, 223
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	2 cut(s)	91, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XspI	CTAG	2 cut(s)	20, 452
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.