Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

66172073 .. 66172774

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTGATCCAATTCACGGGAAAATGGGTACTGAAGCTTCAGCAAGACTTGTTATCATTCTATGCCTCGTCTCTACTCTTTATCAGCTCGGTTCTGAATTCAAGTATCAGAGTATGGCTCAAGTGTTGCCCATTGAAGAAGTGAGAGCTCTTAATCAAATAGCAAATGAGTTGGGGTTAAACAATGAAAAATTAAATGGACTTTGCAAAGGCTTCAGCTCGGAAATCATATGTGACTGCAGTTTTGAAGGCTACACCATTTGCCACATCACAGAAATTGCACTGATTGGTAGCGGTTTGACTGGAGTTATACCTAAAGGACTGGCCAATCTCACATATCTGAAGAGCTTGAATCTCGAGAAAAATCAATTGACTGGTTCTTTACCTGCTAGCTTGGCGAATTTAACTTTGCTCTACCTGGATCTTTCAAACAATCAGCTGACTGGGCCTATACCAGAGAGCTTAGGGAATTTAAGTTTCGCCAACTCTATTTACAGACTTTACATGACAATTGAAGATAGGGAGAATCAAGCAACAATTGTCCTTCTTCGGAAACAAGCTGAACAGATATTTGGCATCACCTGTCCTCAACTGGTCAACAAAACTGTCTTTCCAAGTGAAGAAGCATTCCCAGTGGGGGATTTTTTGAGGAGTATGCTGCTGAAACAATTGGGTAATCTTCGTACCCTTTTCGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

5.28

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	89 - 147	9.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	2 cut(s)	2, 429
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	3 cut(s)	98, 400, 469
AcuI	CTGAAG	4 cut(s)	24, 54, 199, 362
AfaI	GTAC	2 cut(s)	31, 685
AfiI	CCNNNNNNNGG	2 cut(s)	17, 637
AgsI	TTSAA	6 cut(s)	103, 137, 248, 352, 429, 515
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	9 cut(s)	38, 88, 149, 219, 348, 393, 439, 462, 560
AluI	AGCT	9 cut(s)	38, 88, 149, 219, 348, 393, 439, 462, 560
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	2, 429
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	324, 446
ApeKI	GCWGC	1 cut(s)	658
ApoI	RAATTY	3 cut(s)	98, 400, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	2 cut(s)	17, 571
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	151
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	2 cut(s)	453, 626
BmsI	GCATC	1 cut(s)	585
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	2 cut(s)	453, 626
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 637
Bse1I	ACTGG	6 cut(s)	307, 327, 379, 448, 597, 632
BseBI	CCWGG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	17, 637
BseNI	ACTGG	6 cut(s)	307, 327, 379, 448, 597, 632
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	1 cut(s)	645
BshFI	GGCC	2 cut(s)	326, 448
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	17, 637
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	326, 448
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	7, 421
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	326, 448
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	2, 429
BspQI	GCTCTTC	1 cut(s)	338
BsrI	ACTGG	6 cut(s)	307, 327, 379, 448, 597, 632
BssMI	GATC	2 cut(s)	7, 421
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	10, 424
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	7, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 445
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	326, 448
BtsIMutI	CAGTG	2 cut(s)	281, 639
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	30, 684
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	2 cut(s)	30, 684
DdeI	CTNAG	1 cut(s)	463
DpnI	GATC	2 cut(s)	9, 423
DpnII	GATC	2 cut(s)	7, 421
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	4 cut(s)	24, 54, 199, 362
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	508
FaiI	YATR	9 cut(s)	64, 116, 230, 232, 311, 337, 452, 506, 656
FatI	CATG	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	659
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	326, 448
Hin1II	CATG	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	352, 526
HphI	GGTGA	2 cut(s)	17, 571
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	5 cut(s)	97, 111, 223, 342, 552
Hpy188III	TCNNGA	2 cut(s)	356, 358
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	242, 554
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	207, 240, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 445
HpyF3I	CTNAG	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	7, 421
LguI	GCTCTTC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	9, 423
MboI	GATC	2 cut(s)	7, 421
MboII	GAAGA	6 cut(s)	149, 355, 527, 539, 632, 671
MfeI	CAATTG	4 cut(s)	368, 510, 537, 668
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	3 cut(s)	77, 597, 642
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	5 cut(s)	153, 179, 194, 404, 473
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	4 cut(s)	368, 510, 537, 668
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	395, 445
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	2 cut(s)	7, 421
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	352, 526
PkrI	GCNGC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	31, 685
RsaNI	GTAC	2 cut(s)	30, 684
SacI	GAGCTC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	153, 179, 194, 404, 473
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	2 cut(s)	7, 421
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	120, 356
SmoI	CTYRAG	2 cut(s)	120, 356
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	352, 526
Tru1I	TTAA	5 cut(s)	153, 179, 194, 404, 473
Tru9I	TTAA	5 cut(s)	153, 179, 194, 404, 473
TscAI	CASTG	2 cut(s)	288, 639
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	288, 639
XapI	RAATTY	3 cut(s)	98, 400, 469
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.