Prupe.6G125000_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000236
Physical Location & Seq
Reverse (-)
9409583 .. 9411348
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G125000.1

Sequence Viewer

Length: 960 bp
ATGGAGATCGGTAGAGGGCGTTTTGGAAGGGTTTATAAGGCTGAATTGGAAGGTGGTCAAACTACTGTAGCTGTTAAAAGACTTTCTACTCACTCAAAAGAAAAAATTGAAGAATTATTAAATGAATTCTATACCTTAAAGTCATTGAGGCATGAGAACCTTGTTCAATTGTTGGATGCTTATTTTGGAGAAGGGTTACATTTGCTCATCTATGAATATATGCCAAACCTGTCCATTGCAGACGCTGTTTTTGGCTCGAAGTCCAGATTTAAGTTTAATTGGGAAACTAGATTTAACATTTGCCTGGGAATAGCGAGGGGTTTAGAGCATCTTCATGAGCACCCTAGACTCAAGATGGTTCATAGGGATATCAAAGCTGAAGAACAACTTATGATCATCAAAGTGGAAGCACCAAATGGACATATGGCACCTGAGTATGTAGTTCAAGGTTTTGTAACAAGCAAAGTTGATGTTTACAGTTTTGGGGTGGTTATACTCGAAATTGTTAGTGGGAGGAAAAATGCAGGATACAAATTTAACCATGAGAGTGAGCATCTCTTGGACATGGCTTATGTTGCATATAAAAATGGAAGCCTCGTGGACTTGGTGGATAAAAATTTGTCTGGCATTTATGATGCAAAACAAGCCATCACCATCTTAACCTTGGCCGTGATGTGCACGAATATATCTCCTACTCTAAGGCCAAGAATGGCAGACGTTGTGAGTATTCTTGTTGGTGAGAAAACCTTTGAGCAGATTAATCCGCCTACTGTGGATGATCATCAGCTTAATGTAGCCATGGCTCATGGCGAATGTACCAAAGCTGATTCTTCTACTTCCACAGACGTGACCTCAAGGGCATCAACTTCAACCAAATTAATCAAGGGGATAGATGAAACACAAAATTCTTCTGCAGAAACCAATCTTGAAATATCCGAAGAGAGTCGGACCTCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

320

Amino Acids

35.72

Weight (kDa)

6.02

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 427
AciI CCGC 1 cut(s) 764
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 4 cut(s) 125, 533, 616, 904
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 817
AgsI TTSAA 5 cut(s) 110, 167, 446, 870, 929
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 1 cut(s) 303
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 4 cut(s) 71, 377, 787, 824
AluI AGCT 4 cut(s) 71, 377, 787, 824
Alw21I GWGCWC 2 cut(s) 342, 680
Alw44I GTGCAC 1 cut(s) 676
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 666, 701
ApaLI GTGCAC 1 cut(s) 676
ApoI RAATTY 4 cut(s) 125, 533, 616, 904
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AseI ATTAAT 2 cut(s) 759, 878
AspS9I GGNCC 1 cut(s) 948
AsuHPI GGTGA 2 cut(s) 643, 749
AvaII GGWCC 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 680
BanI GGYRCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 596
Bbv12I GWGCWC 2 cut(s) 342, 680
BccI CCATC 3 cut(s) 349, 656, 662
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 521
BclI TGATCA 2 cut(s) 393, 778
BfaI CTAG 2 cut(s) 288, 345
BfmI CTRYAG 2 cut(s) 66, 912
BfuI GTATCC 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 948
BmgBI CACGTC 1 cut(s) 847
BmgT120I GGNCC 1 cut(s) 948
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 5 cut(s) 166, 337, 562, 625, 869
BpuEI CTTGAG 2 cut(s) 335, 838
BsaBI GATNNNNATC 1 cut(s) 780
BsaJI CCNNGG 3 cut(s) 304, 663, 798
Bse3DI GCAATG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 304, 663, 798
BseGI GGATG 2 cut(s) 181, 781
BseJI GATNNNNATC 1 cut(s) 780
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 680
BshFI GGCC 2 cut(s) 668, 703
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 342, 680
BsnI GGCC 2 cut(s) 668, 703
Bsp1286I GDGCHC 2 cut(s) 342, 680
Bsp143I GATC 3 cut(s) 6, 393, 778
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 1 cut(s) 764
BspANI GGCC 2 cut(s) 668, 703
BspCNI CTCAG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 916
BspT107I GGYRCC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 3 cut(s) 304, 663, 798
BssMI GATC 3 cut(s) 6, 393, 778
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 663, 798
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 67, 479, 772
Bst6I CTCTTC 1 cut(s) 933
BstDEI CTNAG 2 cut(s) 432, 698
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 2 cut(s) 181, 781
BstKTI GATC 3 cut(s) 9, 396, 781
BstMBI GATC 3 cut(s) 6, 393, 778
BstMWI GCNNNNNNNGC 2 cut(s) 575, 644
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 2 cut(s) 66, 912
BstSLI GKGCMC 1 cut(s) 680
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 2 cut(s) 668, 703
BtgI CCRYGG 1 cut(s) 798
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 2 cut(s) 181, 781
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 948
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 816
CviAII CATG 6 cut(s) 152, 335, 542, 565, 799, 806
CviQI GTAC 1 cut(s) 816
DdeI CTNAG 2 cut(s) 432, 698
DpnI GATC 3 cut(s) 8, 395, 780
DpnII GATC 3 cut(s) 6, 393, 778
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
EciI GGCGGA 1 cut(s) 753
Eco130I CCWWGG 2 cut(s) 663, 798
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 948
Eco57I CTGAAG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 663, 798
ErhI CCWWGG 2 cut(s) 663, 798
FaeI CATG 6 cut(s) 155, 338, 545, 568, 802, 809
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 6 cut(s) 151, 334, 541, 564, 798, 805
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 2 cut(s) 393, 778
FokI GGATG 2 cut(s) 188, 788
FspBI CTAG 2 cut(s) 288, 345
HaeIII GGCC 2 cut(s) 668, 703
HgaI GACGC 1 cut(s) 251
Hin1II CATG 6 cut(s) 155, 338, 545, 568, 802, 809
HinfI GANTC 3 cut(s) 348, 827, 943
HphI GGTGA 2 cut(s) 643, 749
Hpy166II GTNNAC 3 cut(s) 475, 601, 678
Hpy188I TCNGA 2 cut(s) 937, 948
Hpy188III TCNNGA 4 cut(s) 264, 335, 352, 926
Hpy8I GTNNAC 3 cut(s) 475, 601, 678
HpyAV CCTTC 3 cut(s) 21, 44, 185
HpyCH4III ACNGT 3 cut(s) 67, 479, 772
HpyCH4IV ACGT 2 cut(s) 717, 846
HpyCH4V TGCA 6 cut(s) 239, 524, 578, 638, 678, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 644
HpyF3I CTNAG 2 cut(s) 432, 698
HpySE526I ACGT 2 cut(s) 717, 846
Hsp92II CATG 6 cut(s) 155, 338, 545, 568, 802, 809
Ksp22I TGATCA 2 cut(s) 393, 778
Kzo9I GATC 3 cut(s) 6, 393, 778
LpnPI CCDG 7 cut(s) 242, 277, 290, 317, 444, 510, 609
LweI GCATC 5 cut(s) 166, 337, 562, 625, 869
MaeI CTAG 2 cut(s) 288, 345
MaeII ACGT 2 cut(s) 717, 846
MaeIII GTNAC 3 cut(s) 195, 454, 847
MalI GATC 3 cut(s) 8, 395, 780
MboI GATC 3 cut(s) 6, 393, 778
MboII GAAGA 6 cut(s) 122, 323, 392, 822, 900, 950
MfeI CAATTG 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 342, 680
MlyI GAGTC 2 cut(s) 342, 952
MmeI TCCRAC 2 cut(s) 153, 926
MnlI CCTC 6 cut(s) 8, 141, 309, 507, 605, 862
MslI CAYNNNNRTG 4 cut(s) 333, 401, 546, 845
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 575, 644
NcoI CCATGG 1 cut(s) 798
NdeI CATATG 1 cut(s) 423
NdeII GATC 3 cut(s) 6, 393, 778
NlaIII CATG 6 cut(s) 155, 338, 545, 568, 802, 809
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 847
OliI CACNNNNGTG 1 cut(s) 845
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 1 cut(s) 827
PleI GAGTC 2 cut(s) 342, 951
PpsI GAGTC 2 cut(s) 342, 951
PshBI ATTAAT 2 cut(s) 759, 878
PsiI TTATAA 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 948
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
RseI CAYNNNNRTG 4 cut(s) 333, 401, 546, 845
Sau3AI GATC 3 cut(s) 6, 393, 778
Sau96I GGNCC 1 cut(s) 948
SchI GAGTC 2 cut(s) 342, 952
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 2 cut(s) 342, 680
SfaNI GCATC 5 cut(s) 166, 337, 562, 625, 869
SfcI CTRYAG 2 cut(s) 66, 912
SinI GGWCC 1 cut(s) 948
SmiMI CAYNNNNRTG 4 cut(s) 333, 401, 546, 845
SmlI CTYRAG 2 cut(s) 350, 853
SmoI CTYRAG 2 cut(s) 350, 853
SsiI CCGC 1 cut(s) 764
SspMI CTAG 2 cut(s) 288, 345
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 2 cut(s) 663, 798
TaaI ACNGT 3 cut(s) 67, 479, 772
TaiI ACGT 2 cut(s) 720, 849
TaqI TCGA 2 cut(s) 257, 498
TfiI GAWTC 1 cut(s) 827
TseFI GTSAC 1 cut(s) 847
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 5 cut(s) 138, 228, 323, 350, 909
VneI GTGCAC 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 948
VspI ATTAAT 2 cut(s) 759, 878
XapI RAATTY 4 cut(s) 125, 533, 616, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XspI CTAG 2 cut(s) 288, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.