Rroxscaffold_1G00075070

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
95833349 .. 95839127
5779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075070.1

Sequence Viewer

Length: 954 bp
ATGAAACTAAGGAATGGGAAAATGAAATTGACGTTACTTTCCAGGGATCTTTCCAACAATCAACTGATTGGGCCTATACCAGAGAGTTTAGGGAATTTGACTTTGGCCGGTTCTATTGATCTGCATGATAACTTTCTCAACGGCTCTATACCAGCATCTTTGGGTGCATTGACTCATTTGTATAGACTGGATTTGCATAACAATGGAATCTCTGGTAGTCTCCCACGAAGACTTGGAAATTTGACAAAGCTTCGAACCTTCGACGTCGCATCCAACAGTATCACTGGGACATTACCAAACAAATTCGCCAGCCTTAAGAGCCTGAATGAATTTTCTGTAGCTGGTAACTATTTGTCTGGTCCTTTACCTGACTTCATAGCCAACTGGACTTCACTCTGGGAAGTTTTGCTCAACGGAAACAATTTCCACGGAAAGATACCCGCCCGGATTTTTAATTTATCAAGTCTACGATATTTGGCAATAAGTGATGTCGGAGCAAACTCTCATTTCCGGTTCCCACCATCAACACATGTGACGACAAGTTTTCGTATTTTGATACTAAGAAACTGCTCAATCACTGGTGAAATTCCTTCCTACATTGGAAATATGTCATCATTATGGAACCTAGACCTGAGCTTCAACAGCTTAACGGGCAAAATCCCAGATTCTTTGAAAAACTTAAATTTAAGTTGGATGTCTTTTCCAAACAATATGCTTACTGGGGAAATTCCTAATTGGATTCAAAATTCAGTCTGGAGTAAGATGGATCTTTCATACAATAATTTTGCAAAACCAACCTTTGAAATACCATCCAGCTTAGACTTGAATTTGTTTTCTTGTTGCTGTAACTCCTCAATCTGTCTGCCAAATACGTATGACTGGGCGGACCCAACCACGGAGAAGTACAGTGGTGTTCACCCCGTCATTGCTGACCAAAAAATTTATGCTCAATAA

Protein Analysis

317

Amino Acids

35.07

Weight (kDa)

8.55

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 52 - 162 1e-09 Leucine-rich repeat region
LRR_8 PF13855 59 - 118 8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 466
AciI CCGC 2 cut(s) 441, 884
AclWI GGATC 2 cut(s) 54, 774
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 905
AfiI CCNNNNNNNGG 1 cut(s) 895
AflII CTTAAG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 5 cut(s) 640, 673, 743, 803, 826
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 250, 341, 636, 645, 816
AluI AGCT 5 cut(s) 250, 341, 636, 645, 816
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 54, 774
AoxI GGCC 2 cut(s) 71, 105
AspS9I GGNCC 3 cut(s) 71, 359, 886
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 593, 908
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 2 cut(s) 359, 886
BbsI GAAGAC 1 cut(s) 235
BccI CCATC 3 cut(s) 529, 757, 817
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 43
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 336
BfrI CTTAAG 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 43, 445
Bme18I GGWCC 2 cut(s) 359, 886
BmgT120I GGNCC 3 cut(s) 71, 359, 886
BmiI GGNNCC 3 cut(s) 515, 623, 888
BmrFI CCNGG 2 cut(s) 43, 445
BmrI ACTGGG 3 cut(s) 294, 729, 889
BmsI GCATC 2 cut(s) 164, 278
BmuI ACTGGG 3 cut(s) 294, 729, 889
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 775
Bpu10I CCTNAGC 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 873
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 42, 427, 894
BsaWI WCCGGW 1 cut(s) 510
Bsc4I CCNNNNNNNGG 1 cut(s) 895
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 6 cut(s) 192, 289, 389, 583, 724, 884
Bse3DI GCAATG 1 cut(s) 924
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 42, 427, 894
BseGI GGATG 3 cut(s) 269, 699, 809
BseLI CCNNNNNNNGG 1 cut(s) 895
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 6 cut(s) 192, 289, 389, 583, 724, 884
BseRI GAGGAG 1 cut(s) 841
BshFI GGCC 2 cut(s) 73, 107
BsiSI CCGG 3 cut(s) 108, 445, 511
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 895
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 2 cut(s) 73, 107
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 3 cut(s) 46, 118, 766
BspACI CCGC 2 cut(s) 441, 884
BspANI GGCC 2 cut(s) 73, 107
BspCNI CTCAG 1 cut(s) 624
BspLI GGNNCC 3 cut(s) 515, 623, 888
BspPI GGATC 2 cut(s) 54, 774
BspT104I TTCGAA 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 6 cut(s) 192, 289, 389, 583, 724, 884
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 42, 427, 894
BssMI GATC 3 cut(s) 46, 118, 766
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 278, 908
BstACI GRCGYC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 8, 560, 632, 817
BstDSI CCRYGG 2 cut(s) 427, 894
BstF5I GGATG 3 cut(s) 269, 699, 809
BstKTI GATC 3 cut(s) 49, 121, 769
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 46, 118, 766
BstMWI GCNNNNNNNGC 3 cut(s) 318, 642, 651
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 41, 443
BstSFI CTRYAG 1 cut(s) 336
BstSNI TACGTA 1 cut(s) 873
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 46, 766
BstYI RGATCY 2 cut(s) 46, 766
BsuRI GGCC 2 cut(s) 73, 107
BtgI CCRYGG 2 cut(s) 427, 894
BtsCI GGATG 3 cut(s) 269, 699, 809
BtsIMutI CAGTG 3 cut(s) 282, 576, 913
Cac8I GCNNGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 71, 359, 886
Csp6I GTAC 1 cut(s) 904
CviAII CATG 2 cut(s) 125, 530
CviQI GTAC 1 cut(s) 904
DdeI CTNAG 4 cut(s) 8, 560, 632, 817
DpnI GATC 3 cut(s) 48, 120, 768
DpnII GATC 3 cut(s) 46, 118, 766
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 1 cut(s) 899
Eco105I TACGTA 1 cut(s) 873
Eco47I GGWCC 2 cut(s) 359, 886
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 2 cut(s) 128, 533
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 124, 529
FauI CCCGC 1 cut(s) 448
FblI GTMKAC 1 cut(s) 466
FokI GGATG 3 cut(s) 256, 706, 796
FspBI CTAG 1 cut(s) 626
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 2 cut(s) 73, 107
HapII CCGG 3 cut(s) 108, 445, 511
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 128, 533
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 4 cut(s) 172, 207, 665, 739
HpaII CCGG 3 cut(s) 108, 445, 511
HphI GGTGA 2 cut(s) 593, 908
Hpy166II GTNNAC 2 cut(s) 467, 916
Hpy188I TCNGA 1 cut(s) 494
Hpy188III TCNNGA 1 cut(s) 754
Hpy8I GTNNAC 2 cut(s) 467, 916
Hpy99I CGWCG 2 cut(s) 266, 269
HpyAV CCTTC 2 cut(s) 268, 600
HpyCH4III ACNGT 2 cut(s) 278, 908
HpyCH4IV ACGT 3 cut(s) 32, 264, 872
HpyCH4V TGCA 4 cut(s) 124, 167, 196, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 642, 651
HpyF3I CTNAG 4 cut(s) 8, 560, 632, 817
HpySE526I ACGT 3 cut(s) 32, 264, 872
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 128, 533
Kzo9I GATC 3 cut(s) 46, 118, 766
LmnI GCTCC 1 cut(s) 494
LweI GCATC 2 cut(s) 164, 278
MaeI CTAG 1 cut(s) 626
MaeII ACGT 3 cut(s) 32, 264, 872
MaeIII GTNAC 4 cut(s) 33, 344, 532, 845
MalI GATC 3 cut(s) 48, 120, 768
MboI GATC 3 cut(s) 46, 118, 766
MboII GAAGA 1 cut(s) 240
MflI RGATCY 2 cut(s) 46, 766
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 4 cut(s) 78, 297, 472, 671
MnlI CCTC 1 cut(s) 862
MseI TTAA 5 cut(s) 315, 453, 647, 680, 686
MslI CAYNNNNRTG 2 cut(s) 201, 616
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 3 cut(s) 108, 445, 511
MspR9I CCNGG 2 cut(s) 43, 445
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 318, 642, 651
NciI CCSGG 1 cut(s) 445
NdeII GATC 3 cut(s) 46, 118, 766
NlaIII CATG 2 cut(s) 128, 533
NlaIV GGNNCC 3 cut(s) 515, 623, 888
NmuCI GTSAC 1 cut(s) 532
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 253
PciI ACATGT 1 cut(s) 529
PfeI GAWTC 3 cut(s) 207, 665, 739
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 873
PscI ACATGT 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 515, 623, 888
PspPI GGNCC 3 cut(s) 71, 359, 886
PsuI RGATCY 2 cut(s) 46, 766
RsaI GTAC 1 cut(s) 905
RsaNI GTAC 1 cut(s) 904
RseI CAYNNNNRTG 2 cut(s) 201, 616
SaqAI TTAA 5 cut(s) 315, 453, 647, 680, 686
Sau3AI GATC 3 cut(s) 46, 118, 766
Sau96I GGNCC 3 cut(s) 71, 359, 886
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 43, 445
SfaNI GCATC 2 cut(s) 164, 278
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 2 cut(s) 359, 886
SmiMI CAYNNNNRTG 2 cut(s) 201, 616
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SnaBI TACGTA 1 cut(s) 873
SsiI CCGC 2 cut(s) 441, 884
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 41, 443
TaaI ACNGT 2 cut(s) 278, 908
TaiI ACGT 3 cut(s) 35, 267, 875
TaqI TCGA 2 cut(s) 253, 261
TatI WGTACW 1 cut(s) 903
TfiI GAWTC 3 cut(s) 207, 665, 739
Tru1I TTAA 5 cut(s) 315, 453, 647, 680, 686
Tru9I TTAA 5 cut(s) 315, 453, 647, 680, 686
TscAI CASTG 3 cut(s) 289, 583, 913
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 17, 38, 342, 364, 762
TspGWI ACGGA 3 cut(s) 429, 444, 911
TspRI CASTG 3 cut(s) 289, 583, 913
Vha464I CTTAAG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 359, 886
XceI RCATGY 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 1 cut(s) 626
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.