Rh5BG011700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
833220 .. 833874
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG011700.1

Sequence Viewer

Length: 414 bp
ATGATGGGATGGCTGGGTGCAGATCACTTAAAAGAAATAGATATAGGTCTAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGCAAGAGGAACGAGATTGGTAAAGGGGCTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGGAGAATTGTAGCTGTGAAGAGACTTTCCTCTCATTCAGAGGAAAGGATGTCCTCTCATTCAGAGGAAAGGATCTCCTCTCATTCAGAGGAAAGGATCAATCAGTTGAAAAATGAGTTTTATGCCTTAAAATCAATGAGTCAAGAGAACCTTGTTCAGTTGCTGGACGTTTACAACGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAACTCCCTTGCACACGCCTTATTTGGTACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.64

Weight (kDa)

7.99

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 34 - 133 9.7e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 133 6.3e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 239, 263
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 406
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 239, 263
AlwNI CAGNNNCTG 1 cut(s) 322
AoxI GGCC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 135
BccI CCATC 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 73
BseGI GGATG 2 cut(s) 14, 213
BseRI GAGGAG 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 22, 231, 255
BspANI GGCC 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 2 cut(s) 239, 263
BssMI GATC 3 cut(s) 22, 231, 255
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 347
BstF5I GGATG 2 cut(s) 14, 213
BstKTI GATC 3 cut(s) 25, 234, 258
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 22, 231, 255
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 2 cut(s) 14, 213
Cac8I GCNNGC 1 cut(s) 347
CaiI CAGNNNCTG 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 405
CviJI RGCY 6 cut(s) 13, 58, 128, 149, 173, 345
CviKI_1 RGCY 6 cut(s) 13, 58, 128, 149, 173, 345
CviQI GTAC 1 cut(s) 405
DpnI GATC 3 cut(s) 24, 233, 257
DpnII GATC 3 cut(s) 22, 231, 255
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 171
FaiI YATR 5 cut(s) 44, 282, 363, 369, 371
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 148
FokI GGATG 2 cut(s) 21, 220
FspBI CTAG 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 345
HinfI GANTC 1 cut(s) 298
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 142, 331
Hpy188I TCNGA 4 cut(s) 93, 199, 223, 247
Hpy188III TCNNGA 2 cut(s) 50, 302
Hpy8I GTNNAC 2 cut(s) 142, 331
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 20, 157, 349, 373, 389
HpySE526I ACGT 1 cut(s) 327
Kzo9I GATC 3 cut(s) 22, 231, 255
LpnPI CCDG 3 cut(s) 72, 308, 359
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 24, 233, 257
MboI GATC 3 cut(s) 22, 231, 255
MboII GAAGA 1 cut(s) 190
MflI RGATCY 1 cut(s) 231
MluCI AATT 3 cut(s) 74, 94, 165
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 8 cut(s) 77, 99, 193, 199, 217, 223, 241, 247
MseI TTAA 4 cut(s) 29, 77, 287, 412
NdeII GATC 3 cut(s) 22, 231, 255
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 61
PceI AGGCCT 1 cut(s) 345
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 29, 77, 287, 412
Sau3AI GATC 3 cut(s) 22, 231, 255
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 307
SetI ASST 4 cut(s) 49, 175, 312, 330
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 135
Sse9I AATT 3 cut(s) 74, 94, 165
SseBI AGGCCT 1 cut(s) 345
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 345
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 330
TasI AATT 3 cut(s) 74, 94, 165
Tru1I TTAA 4 cut(s) 29, 77, 287, 412
Tru9I TTAA 4 cut(s) 29, 77, 287, 412
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.