Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

793129 .. 798385

Gene Structure 5257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG011200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGTACTGAAGCTTCAGCAAGACTTGTCAGCTTTTCTCTTATAATTCTATGCCTCATCTTTACTCTTTGTCAGCTTGGTTCTGGAGTCACATATCAGAGTACAGCTCAAACGTTGCCTGATGAAGAAGTGAGCGCTTTGGATGAAATAGTATGGAAGTTGGATTTAGACACTCCAATGTCCTCTGAACGCTCATTTTGCAATGAAAGCAGCTATGATGGGATTGATGGCATCACTTGTGATTGGACTTTTCAAGAAGGCACCATTTGCCACATCACAGAAATGGATCTCAGTAATAATCAATTGACTGGTTCTATACCTGCTAACTTGGGGAATTTACCTTCGCTCAACATCCTGAAACTTTACACAAATCAATTGACCGGACTCATCCCAGCGAGTTTGGGGAATATGAAATTTAAAGTATCAAACCGTACCGGCCGTACGTGCACGAGGGCTACTTATAGTATGTGCAAAGGTTCTTATTCGGAGCGCAGCATCGGTATTTCCTTCCAACTGGATCTTTCATACAATCAATTAAATGGATCCATACCAGCCACTTTAGGAAATGTGGCGGTCTCTTCAGCGATATCTGATCAAAATGCCTACCAACTGTTCAAGCATAAGCATTATGACAGGGCCAATGTCAACTCAGTGTTCTACCTGGATCTTTCAAGCAATCAATTGACTGGGGCTATACCAGAGAGCTTAGGGAAATTGACTTTCGCCAGTTATATGTCTTTGCATGACAATGGAATATCTGGTGCTCTCCCACAAACACTTGGAAATTTGATAAACCTTGAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.29

Weight (kDa)

4.82

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	1 cut(s)	572
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	5 cut(s)	294, 525, 537, 550, 672
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	334, 413, 784
AcuI	CTGAAG	2 cut(s)	30, 564
AfaI	GTAC	4 cut(s)	7, 103, 433, 442
AfeI	AGCGCT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	254, 616, 672, 800
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	6 cut(s)	14, 33, 76, 107, 213, 705
AluI	AGCT	6 cut(s)	14, 33, 76, 107, 213, 705
Alw21I	GWGCWC	2 cut(s)	449, 766
Alw26I	GTCTC	1 cut(s)	580
Alw44I	GTGCAC	1 cut(s)	445
AlwI	GGATC	5 cut(s)	294, 525, 537, 550, 672
Aor51HI	AGCGCT	1 cut(s)	136
AoxI	GGCC	2 cut(s)	436, 636
ApaLI	GTGCAC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	210, 492
ApoI	RAATTY	3 cut(s)	334, 413, 784
AspLEI	GCGC	2 cut(s)	137, 492
AspS9I	GGNCC	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	449, 766
BbvI	GCAGC	2 cut(s)	222, 504
BccI	CCATC	2 cut(s)	212, 221
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	1 cut(s)	662
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	580
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	211, 493
BlsI	GCNGC	2 cut(s)	212, 494
Bme1390I	CCNGG	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	636
BmiI	GGNNCC	2 cut(s)	262, 544
BmrFI	CCNGG	1 cut(s)	662
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	2 cut(s)	240, 504
BmuI	ACTGGG	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	706
BsaAI	YACGTR	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	580
BsaWI	WCCGGW	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	4 cut(s)	313, 519, 691, 726
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	662
BseGI	GGATG	3 cut(s)	148, 351, 387
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	304, 663
BseNI	ACTGG	4 cut(s)	313, 519, 691, 726
BseSI	GKGCMC	1 cut(s)	449
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	222, 504
BseYI	CCCAGC	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	438, 638
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	449, 766
BsiSI	CCGG	2 cut(s)	381, 435
BsiWI	CGTACG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	438, 638
Bso31I	GGTCTC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	449, 766
Bsp143I	GATC	5 cut(s)	286, 517, 542, 592, 664
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	2 cut(s)	438, 638
BspCNI	CTCAG	2 cut(s)	303, 662
BspLI	GGNNCC	2 cut(s)	262, 544
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	5 cut(s)	294, 525, 537, 550, 672
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	4 cut(s)	313, 519, 691, 726
BssAI	RCCGGY	1 cut(s)	434
BssMI	GATC	5 cut(s)	286, 517, 542, 592, 664
BssSI	CACGAG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	2 cut(s)	431, 612
Bst6I	CTCTTC	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	290, 649, 706
BstF5I	GGATG	3 cut(s)	148, 351, 387
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 492
BstKTI	GATC	5 cut(s)	289, 520, 545, 595, 667
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	5 cut(s)	286, 517, 542, 592, 664
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 207, 267, 444
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	222, 504
BstX2I	RGATCY	4 cut(s)	286, 517, 542, 664
BstYI	RGATCY	4 cut(s)	286, 517, 542, 664
BstZI	CGGCCG	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	438, 638
BtsCI	GGATG	3 cut(s)	148, 351, 387
BtsIMutI	CAGTG	1 cut(s)	657
BveI	ACCTGC	1 cut(s)	328
CfoI	GCGC	2 cut(s)	137, 492
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	636
Csp6I	GTAC	4 cut(s)	6, 102, 432, 441
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	4 cut(s)	6, 102, 432, 441
DdeI	CTNAG	3 cut(s)	290, 649, 706
DpnI	GATC	5 cut(s)	288, 519, 544, 594, 666
DpnII	GATC	5 cut(s)	286, 517, 542, 592, 664
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EclXI	CGGCCG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	588
Eco47III	AGCGCT	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	30, 564
EcoRII	CCWGG	1 cut(s)	660
EcoRV	GATATC	1 cut(s)	588
FaeI	CATG	1 cut(s)	746
FatI	CATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	211, 493
FokI	GGATG	3 cut(s)	155, 338, 374
Fsp4HI	GCNGC	2 cut(s)	211, 493
GlaI	GCGC	2 cut(s)	136, 491
GluI	GCNGC	2 cut(s)	211, 493
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	438, 638
HapII	CCGG	2 cut(s)	381, 435
HhaI	GCGC	2 cut(s)	137, 492
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	2 cut(s)	135, 490
HinP1I	GCGC	2 cut(s)	135, 490
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	87, 384
HpaII	CCGG	2 cut(s)	381, 435
Hpy166II	GTNNAC	2 cut(s)	447, 646
Hpy188I	TCNGA	4 cut(s)	99, 187, 487, 592
Hpy188III	TCNNGA	3 cut(s)	84, 254, 355
Hpy8I	GTNNAC	2 cut(s)	447, 646
HpyAV	CCTTC	3 cut(s)	251, 351, 517
HpyCH4III	ACNGT	2 cut(s)	431, 612
HpyCH4IV	ACGT	2 cut(s)	113, 443
HpyCH4V	TGCA	4 cut(s)	201, 447, 471, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 207, 267, 444
HpyF3I	CTNAG	3 cut(s)	290, 649, 706
HpySE526I	ACGT	2 cut(s)	113, 443
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	2 cut(s)	135, 490
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	286, 517, 542, 592, 664
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	2 cut(s)	222, 504
LweI	GCATC	2 cut(s)	240, 504
MaeII	ACGT	2 cut(s)	113, 443
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	288, 519, 544, 594, 666
MboI	GATC	5 cut(s)	286, 517, 542, 592, 664
MboII	GAAGA	2 cut(s)	137, 570
MfeI	CAATTG	3 cut(s)	302, 374, 680
MflI	RGATCY	4 cut(s)	286, 517, 542, 664
MhlI	GDGCHC	2 cut(s)	449, 766
MluCI	AATT	9 cut(s)	45, 302, 334, 374, 413, 533, 680, 713, 784
MlyI	GAGTC	2 cut(s)	96, 378
MmeI	TCCRAC	2 cut(s)	141, 535
MnlI	CCTC	3 cut(s)	65, 193, 444
MseI	TTAA	2 cut(s)	417, 536
MslI	CAYNNNNRTG	3 cut(s)	176, 281, 747
MspI	CCGG	2 cut(s)	381, 435
MspR9I	CCNGG	1 cut(s)	662
MunI	CAATTG	3 cut(s)	302, 374, 680
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	198, 207, 267, 444
NdeII	GATC	5 cut(s)	286, 517, 542, 592, 664
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	262, 544
NmuCI	GTSAC	1 cut(s)	88
Pfl23II	CGTACG	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	212, 494
PleI	GAGTC	2 cut(s)	95, 378
PpsI	GAGTC	2 cut(s)	95, 378
Ppu21I	YACGTR	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	660
PspLI	CGTACG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	262, 544
PspPI	GGNCC	1 cut(s)	636
PsuI	RGATCY	4 cut(s)	286, 517, 542, 664
RsaI	GTAC	4 cut(s)	7, 103, 433, 442
RsaNI	GTAC	4 cut(s)	6, 102, 432, 441
RseI	CAYNNNNRTG	3 cut(s)	176, 281, 747
SaqAI	TTAA	2 cut(s)	417, 536
SatI	GCNGC	2 cut(s)	211, 493
Sau3AI	GATC	5 cut(s)	286, 517, 542, 592, 664
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	96, 378
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	2 cut(s)	449, 766
SfaNI	GCATC	2 cut(s)	240, 504
SmiMI	CAYNNNNRTG	3 cut(s)	176, 281, 747
Sse9I	AATT	9 cut(s)	45, 302, 334, 374, 413, 533, 680, 713, 784
SsiI	CCGC	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	431, 612
TaiI	ACGT	2 cut(s)	116, 446
TasI	AATT	9 cut(s)	45, 302, 334, 374, 413, 533, 680, 713, 784
TatI	WGTACW	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	417, 536
Tru9I	TTAA	2 cut(s)	417, 536
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	210, 492
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	5 cut(s)	138, 159, 219, 425, 513
TspRI	CASTG	1 cut(s)	657
VneI	GTGCAC	1 cut(s)	445
XapI	RAATTY	3 cut(s)	334, 413, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.