RchiOBHm_Chr4g0391641

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000236
Physical Location & Seq
Reverse (-)
7024162 .. 7025812
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36446

Sequence Viewer

Length: 1077 bp
ATGATGGGGTGGCTGGGGAATACAGATCACTTACAAGAAATAGATATAGGTATAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGCAAGAGGAATGAGATTGCTCAAGGGGGTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGGAAAATTGTAGCCGTGAAGAAACTTCGCTCTCATTGCCAGGAAAGGATCAATGAGTTCATAAATGAATTTTATACCTTAAAAGCAATGAGTCAAGAGAACCTTGTTCAGTTGCTGGACATTTACAACGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGGAGAACAACTCCCTTGCACATGCCTTATTTGACTCAAAGTCCAAATTGAAACTTGACTGGGAAGTTAGGTTTAACATTTGCCTGGGAATAGCTAGGGGATTGGAGTATCTACATGAGCATCCCAGGATGAAGATAGTTCACAGCGACATTAAATCCACTAATATTCTTCTCGATGGAAACCTTAAGGCTAAAATATCAGACTTTGGATTGGCAAGACTTTACACCGAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGCCACAAGGATATATGGCACCTGAGTATGTTCGAGGAATTGTGACATCTAAAGCCGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGACAAATGCAGGATACAGGCGAGATAGCCAGGAAAGTGAATTTCTTCTAGACACGGCTTATGATTTACATCGGAAAGGAAGGTTGGTGGACTTGGTTGACAAAACCTTGTCCAACAAGTATGATGCAAAACAAGCCATAATCATTTTGAATTTAGCAGTAAAGTGCACCAATATATCTCCAACTCTGAGGCCTACTATGTCTGAAGTAGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTACTCCTGCTCTTAGTGATAGTCACCTTGCTCAAGTTGATTCCTCTGTTTCTATGGAAGCAACCTCGAGAGCATCCACATCATCCAATTTGATCAAAGGGGAAGAGGAAACAGAACACATTTATGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

40.39

Weight (kDa)

6.1

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 35 - 300 9.8e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 37 - 303 1e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 648
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 4 cut(s) 97, 230, 728, 838
AcuI CTGAAG 2 cut(s) 174, 912
AfaI GTAC 2 cut(s) 940, 1069
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 4 cut(s) 376, 568, 674, 838
AhdI GACNNNNNGTC 1 cut(s) 364
AjnI CCWGG 4 cut(s) 201, 408, 449, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw21I GWGCWC 1 cut(s) 857
Alw44I GTGCAC 1 cut(s) 853
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 1003
AoxI GGCC 2 cut(s) 298, 878
ApaLI GTGCAC 1 cut(s) 853
ApoI RAATTY 4 cut(s) 97, 230, 728, 838
Asp700I GAANNNNTTC 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 58, 953
AvaI CYCGRG 1 cut(s) 1003
AvaII GGWCC 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 857
BanI GGYRCC 1 cut(s) 604
Bbv12I GWGCWC 1 cut(s) 857
BccI CCATC 1 cut(s) 494
BceAI ACGGC 2 cut(s) 161, 759
BciT130I CCWGG 4 cut(s) 203, 410, 451, 719
BciVI GTATCC 1 cut(s) 695
BclI TGATCA 2 cut(s) 559, 1029
BfaI CTAG 3 cut(s) 420, 737, 1075
BfmI CTRYAG 1 cut(s) 649
BfrI CTTAAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 695
Bme1390I CCNGG 4 cut(s) 203, 410, 451, 719
Bme18I GGWCC 1 cut(s) 138
BmeRI GACNNNNNGTC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 1003
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 139, 606
BmrFI CCNGG 4 cut(s) 203, 410, 451, 719
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 4 cut(s) 76, 454, 802, 1019
BmuI ACTGGG 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpuEI CTTGAG 2 cut(s) 108, 954
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 409, 449
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 196, 255
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 4 cut(s) 203, 410, 451, 719
BseDI CCNNGG 2 cut(s) 409, 449
BseGI GGATG 4 cut(s) 445, 459, 1010, 1019
BseJI GATNNNNATC 1 cut(s) 756
BseMI GCAATG 2 cut(s) 196, 255
BseMII CTCAG 2 cut(s) 600, 866
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 944
BseSI GKGCMC 1 cut(s) 857
BseYI CCCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 300, 880
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 857
BsiHKCI CYCGRG 1 cut(s) 1003
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 300, 880
BsoBI CYCGRG 1 cut(s) 1003
Bsp1286I GDGCHC 1 cut(s) 857
Bsp143I GATC 4 cut(s) 25, 210, 559, 1029
BspANI GGCC 2 cut(s) 300, 880
BspCNI CTCAG 2 cut(s) 601, 867
BspLI GGNNCC 2 cut(s) 139, 606
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 196, 255
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 409, 449
BssMI GATC 4 cut(s) 25, 210, 559, 1029
Bst2UI CCWGG 4 cut(s) 203, 410, 451, 719
Bst4CI ACNGT 3 cut(s) 142, 653, 679
Bst6I CTCTTC 1 cut(s) 1035
BstAFI CTTAAG 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 3 cut(s) 609, 875, 950
BstF5I GGATG 4 cut(s) 445, 459, 1010, 1019
BstKTI GATC 4 cut(s) 28, 213, 562, 1032
BstMBI GATC 4 cut(s) 25, 210, 559, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 198, 821
BstNI CCWGG 4 cut(s) 203, 410, 451, 719
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 4 cut(s) 201, 408, 449, 717
BstSFI CTRYAG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 857
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 2 cut(s) 300, 880
BtsCI GGATG 4 cut(s) 445, 459, 1010, 1019
Cac8I GCNNGC 1 cut(s) 302
CaiI CAGNNNCTG 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 939, 1068
CviAII CATG 2 cut(s) 347, 440
CviQI GTAC 2 cut(s) 939, 1068
DdeI CTNAG 3 cut(s) 609, 875, 950
DpnI GATC 4 cut(s) 27, 212, 561, 1031
DpnII GATC 4 cut(s) 25, 210, 559, 1029
DriI GACNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 1035
Eam1105I GACNNNNNGTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 1035
Eco147I AGGCCT 2 cut(s) 300, 880
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 174, 912
Eco88I CYCGRG 1 cut(s) 1003
EcoRII CCWGG 4 cut(s) 201, 408, 449, 717
FaeI CATG 2 cut(s) 350, 443
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 346, 439
FbaI TGATCA 2 cut(s) 559, 1029
FblI GTMKAC 1 cut(s) 648
FokI GGATG 4 cut(s) 432, 466, 997, 1006
FspBI CTAG 3 cut(s) 420, 737, 1075
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 300, 880
Hin1II CATG 2 cut(s) 350, 443
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 3 cut(s) 253, 359, 977
HphI GGTGA 2 cut(s) 58, 953
Hpy166II GTNNAC 6 cut(s) 145, 466, 649, 778, 787, 855
Hpy188I TCNGA 5 cut(s) 96, 526, 762, 876, 892
Hpy188III TCNNGA 4 cut(s) 257, 497, 737, 1005
Hpy8I GTNNAC 6 cut(s) 145, 466, 649, 778, 787, 855
HpyAV CCTTC 2 cut(s) 681, 762
HpyCH4III ACNGT 3 cut(s) 142, 653, 679
HpyCH4V TGCA 6 cut(s) 160, 304, 344, 698, 815, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 821
HpyF3I CTNAG 3 cut(s) 609, 875, 950
Hsp92II CATG 2 cut(s) 350, 443
Ksp22I TGATCA 2 cut(s) 559, 1029
Kzo9I GATC 4 cut(s) 25, 210, 559, 1029
LweI GCATC 4 cut(s) 76, 454, 802, 1019
MaeI CTAG 3 cut(s) 420, 737, 1075
MaeIII GTNAC 3 cut(s) 64, 628, 959
MalI GATC 4 cut(s) 27, 212, 561, 1031
MboI GATC 4 cut(s) 25, 210, 559, 1029
MboII GAAGA 6 cut(s) 193, 469, 485, 566, 725, 1052
MhlI GDGCHC 1 cut(s) 857
MlyI GAGTC 2 cut(s) 262, 353
MmeI TCCRAC 2 cut(s) 825, 893
MnlI CCTC 8 cut(s) 80, 102, 614, 870, 922, 991, 1012, 1036
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 5 cut(s) 80, 242, 399, 477, 510
MslI CAYNNNNRTG 1 cut(s) 1059
MspCI CTTAAG 1 cut(s) 509
MspR9I CCNGG 4 cut(s) 203, 410, 451, 719
MvaI CCWGG 4 cut(s) 203, 410, 451, 719
MwoI GCNNNNNNNGC 2 cut(s) 198, 821
NdeII GATC 4 cut(s) 25, 210, 559, 1029
NlaIII CATG 2 cut(s) 350, 443
NlaIV GGNNCC 2 cut(s) 139, 606
NmuCI GTSAC 3 cut(s) 64, 628, 959
NspI RCATGY 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 1003
PceI AGGCCT 2 cut(s) 300, 880
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 977
PleI GAGTC 2 cut(s) 261, 353
PpsI GAGTC 2 cut(s) 261, 353
Psp6I CCWGG 4 cut(s) 201, 408, 449, 717
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 4 cut(s) 201, 408, 449, 717
PspN4I GGNNCC 2 cut(s) 139, 606
PspPI GGNCC 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 940, 1069
RsaNI GTAC 2 cut(s) 939, 1068
RseI CAYNNNNRTG 1 cut(s) 1059
SaqAI TTAA 5 cut(s) 80, 242, 399, 477, 510
Sau3AI GATC 4 cut(s) 25, 210, 559, 1029
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 262, 353
ScrFI CCNGG 4 cut(s) 203, 410, 451, 719
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 4 cut(s) 76, 454, 802, 1019
SfcI CTRYAG 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 1003
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 1003
SmiMI CAYNNNNRTG 1 cut(s) 1059
SmlI CTYRAG 4 cut(s) 123, 509, 969, 1003
SmoI CTYRAG 4 cut(s) 123, 509, 969, 1003
SseBI AGGCCT 2 cut(s) 300, 880
SspI AATATT 1 cut(s) 490
SspMI CTAG 3 cut(s) 420, 737, 1075
StuI AGGCCT 2 cut(s) 300, 880
StyD4I CCNGG 4 cut(s) 201, 408, 449, 717
TaaI ACNGT 3 cut(s) 142, 653, 679
TaqI TCGA 3 cut(s) 498, 619, 1004
TatI WGTACW 1 cut(s) 938
TfiI GAWTC 1 cut(s) 977
Tru1I TTAA 5 cut(s) 80, 242, 399, 477, 510
Tru9I TTAA 5 cut(s) 80, 242, 399, 477, 510
TseFI GTSAC 3 cut(s) 64, 628, 959
Tsp45I GTSAC 3 cut(s) 64, 628, 959
TspDTI ATGAA 5 cut(s) 211, 243, 333, 470, 562
Vha464I CTTAAG 1 cut(s) 509
VneI GTGCAC 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 4 cut(s) 97, 230, 728, 838
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 1003
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 3 cut(s) 420, 737, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.