Rmu_sc0004862.1_g000015

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004862.1
OG0000236
Physical Location & Seq
Forward (+)
67075 .. 67897
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004862.1_g000015.1.cds

Sequence Viewer

Length: 624 bp
atgaagatagttcacagcgacattaaatccactaatattcttctcgatggaaaccttaaggctaaaatatcagactttggattggcaagactttacaccgaagatgatcaattcaagttcatcaaagtagaagtgccacaaggatatatggcacctgagtatgttcgaggaattgtgacatctaaagctgatgtttacagttttggggtggttatacttgaaactgttagcggaaggacaaatgcaggacacaggggagatagccaggaatgtgattttcttctagacacggcttatgatttacatcgaaaaggaaggctggtggacttggttgacaaaaccttgtctaccaagtatgatgcaaaacaagccataatcatcttgaatttagcagtaaagtgcaccagtatatctccgactctgaggcctactatgtctgaagtggtgagtgttctcgttggcgacaaaaaaattgaggagatttgtccccatgcgcttaatgatagtcccgttgctcaagttgattcctctgtttctatggaagcaacctcgagggcatccacatcatccaatttgatcaaaggggaagatgaaacagaactcatttccgatagtaccccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.63

Weight (kDa)

5.13

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 347
AciI CCGC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 616
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 115, 221, 385
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 404
Alw44I GTGCAC 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 1 cut(s) 425
ApaLI GTGCAC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 385
AspLEI GCGC 1 cut(s) 496
AsuHPI GGTGA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 404
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 266
BclI TGATCA 2 cut(s) 106, 576
BfaI CTAG 2 cut(s) 284, 622
BfrI CTTAAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 550
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 349, 566
BpuEI CTTGAG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 557, 566
BseJI GATNNNNATC 1 cut(s) 303
BseMII CTCAG 2 cut(s) 147, 413
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 404
BshFI GGCC 1 cut(s) 427
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 550
BslFI GGGAC 2 cut(s) 471, 492
BsmFI GGGAC 2 cut(s) 471, 492
BsnI GGCC 1 cut(s) 427
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 2 cut(s) 106, 576
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 148, 414
BspLI GGNNCC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 405
BssMI GATC 2 cut(s) 106, 576
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 200, 226
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 156, 422
BstF5I GGATG 2 cut(s) 557, 566
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 109, 579
BstMBI GATC 2 cut(s) 106, 576
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 557, 566
CfoI GCGC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 615
CviAII CATG 1 cut(s) 491
CviJI RGCY 7 cut(s) 62, 188, 264, 293, 319, 371, 427
CviKI_1 RGCY 7 cut(s) 62, 188, 264, 293, 319, 371, 427
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 2 cut(s) 156, 422
DpnI GATC 2 cut(s) 108, 578
DpnII GATC 2 cut(s) 106, 576
Eco147I AGGCCT 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 494
FaqI GGGAC 2 cut(s) 471, 492
FatI CATG 1 cut(s) 490
FbaI TGATCA 2 cut(s) 106, 576
FblI GTMKAC 1 cut(s) 347
FokI GGATG 2 cut(s) 544, 553
FspBI CTAG 2 cut(s) 284, 622
GlaI GCGC 1 cut(s) 495
HaeIII GGCC 1 cut(s) 427
HhaI GCGC 1 cut(s) 496
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 2 cut(s) 418, 524
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 6 cut(s) 13, 196, 325, 334, 348, 402
Hpy188I TCNGA 5 cut(s) 73, 417, 423, 439, 610
Hpy188III TCNNGA 3 cut(s) 44, 284, 382
Hpy8I GTNNAC 6 cut(s) 13, 196, 325, 334, 348, 402
HpyAV CCTTC 2 cut(s) 228, 309
HpyCH4III ACNGT 2 cut(s) 200, 226
HpyCH4V TGCA 3 cut(s) 245, 362, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 156, 422
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 1 cut(s) 494
Ksp22I TGATCA 2 cut(s) 106, 576
Kzo9I GATC 2 cut(s) 106, 576
LpnPI CCDG 7 cut(s) 168, 231, 238, 251, 278, 305, 418
LweI GCATC 2 cut(s) 349, 566
MaeI CTAG 2 cut(s) 284, 622
MaeIII GTNAC 1 cut(s) 175
MalI GATC 2 cut(s) 108, 578
MboI GATC 2 cut(s) 106, 576
MboII GAAGA 5 cut(s) 16, 32, 113, 272, 599
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 5 cut(s) 110, 171, 385, 471, 571
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 6 cut(s) 161, 417, 469, 538, 546, 559
MseI TTAA 3 cut(s) 24, 57, 498
MspCI CTTAAG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 2 cut(s) 106, 576
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 550
PceI AGGCCT 1 cut(s) 427
PfeI GAWTC 1 cut(s) 524
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 153
PspXI VCTCGAGB 1 cut(s) 550
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 3 cut(s) 24, 57, 498
Sau3AI GATC 2 cut(s) 106, 576
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 404
SetI ASST 5 cut(s) 57, 157, 190, 344, 551
SfaNI GCATC 2 cut(s) 349, 566
Sfr274I CTCGAG 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 3 cut(s) 56, 516, 550
SmoI CTYRAG 3 cut(s) 56, 516, 550
Sse9I AATT 5 cut(s) 110, 171, 385, 471, 571
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 1 cut(s) 231
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 284, 622
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 200, 226
TaqI TCGA 4 cut(s) 45, 166, 307, 551
TasI AATT 5 cut(s) 110, 171, 385, 471, 571
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 24, 57, 498
Tru9I TTAA 3 cut(s) 24, 57, 498
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 17, 109, 606
Vha464I CTTAAG 1 cut(s) 56
VneI GTGCAC 1 cut(s) 400
XapI RAATTY 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 2 cut(s) 284, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.