Rroxscaffold_4G00314200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000236
Physical Location & Seq
Forward (+)
38179514 .. 38180107
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314200.1

Sequence Viewer

Length: 420 bp
ATGGCACCAGAGTATGTTCAAGGAATTGTAACATTTAAAGCTGATGTGTACAGTTTCGGGGTAGTTCTACATGAAACTGTTATTGGAAAGAAAAATGCAGGAACCAAGCGAGATAGCCTAGAAAAAACTTGTCGGGCTGTTATGACTTATGACGCAAAAGAAGTCATTATCATCTTGAACTTAGAAGTTAAGTGCACCAGTATAGATCCAGCCGTGAGGCCTGCTACCATGTCTGATGTTGTTAGTGTATTGTTGGTGACAAAAAAATCGATGAGATTTGCCCCTCTGCCCCAAACGATAATCTCATTGCTCAAGTTGATTCCTCTGCTTTATAGAAGTGACCTCTGGAGGCCATCAACGTCGTCCAATTTTATCAAAGGAGAGGATGGAACAGAACACATTTCTGAAACTACACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

8.55

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 200
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 2 cut(s) 20, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 193
AlwI GGATC 1 cut(s) 200
AoxI GGCC 2 cut(s) 218, 350
ApaLI GTGCAC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 197
BccI CCATC 2 cut(s) 361, 380
BceAI ACGGC 1 cut(s) 197
BfaI CTAG 2 cut(s) 119, 418
BmiI GGNNCC 2 cut(s) 6, 103
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 269
BseGI GGATG 1 cut(s) 391
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 2 cut(s) 220, 352
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 197
BsnI GGCC 2 cut(s) 220, 352
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 205
BspANI GGCC 2 cut(s) 220, 352
BspDI ATCGAT 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 6, 103
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 53, 79
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 2 cut(s) 220, 352
BsuTUI ATCGAT 1 cut(s) 269
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 269
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 71, 229
CviJI RGCY 6 cut(s) 41, 117, 137, 212, 220, 352
CviKI_1 RGCY 6 cut(s) 41, 117, 137, 212, 220, 352
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DraI TTTAAA 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 220
FaeI CATG 2 cut(s) 74, 232
FaiI YATR 7 cut(s) 15, 72, 143, 150, 203, 230, 333
FatI CATG 2 cut(s) 70, 228
FokI GGATG 1 cut(s) 398
FspBI CTAG 2 cut(s) 119, 418
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 2 cut(s) 220, 352
HgaI GACGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 74, 232
HinfI GANTC 1 cut(s) 319
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 49, 195
Hpy188I TCNGA 2 cut(s) 235, 406
Hpy188III TCNNGA 2 cut(s) 175, 346
Hpy8I GTNNAC 2 cut(s) 49, 195
Hpy99I CGWCG 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 53, 79
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 2 cut(s) 98, 195
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 2 cut(s) 74, 232
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 21, 84, 211, 222, 234, 331
MaeI CTAG 2 cut(s) 119, 418
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 3 cut(s) 28, 256, 338
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 24, 367
MnlI CCTC 6 cut(s) 210, 294, 333, 342, 353, 376
MseI TTAA 2 cut(s) 36, 189
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 74, 232
NlaIV GGNNCC 2 cut(s) 6, 103
NmuCI GTSAC 2 cut(s) 256, 338
PceI AGGCCT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 6, 103
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 36, 189
Sau3AI GATC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 43, 345, 362
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 24, 367
SseBI AGGCCT 1 cut(s) 220
SspMI CTAG 2 cut(s) 119, 418
StuI AGGCCT 1 cut(s) 220
TaaI ACNGT 2 cut(s) 53, 79
TaiI ACGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 24, 367
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 36, 189
Tru9I TTAA 2 cut(s) 36, 189
TseFI GTSAC 2 cut(s) 256, 338
Tsp45I GTSAC 2 cut(s) 256, 338
TspDTI ATGAA 1 cut(s) 87
VneI GTGCAC 1 cut(s) 193
XspI CTAG 2 cut(s) 119, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.