Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

7030594 .. 7034477

Gene Structure 3884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGGACCGAAGCTTCATCGAGACTTGTCAGCGTTACTATTACAAGTATATGCCTCATCTTTACTCTTTCTCAGCTTGGTTCTGAATTCAAATATCAGAGTGTAGCTCAAAAGTTGCCCGATGAAGAAGCGAGAGCTCTTAAGCGAGTAGTAGAGAAGTTGGCGTTAAACTATCGAATATCCTCTAAAGGGTGCAATAAGAGCGGTAAGTATGACATCAAATGTGAATGCAGTTTTCAAAACCACACCATTTGCCGCGTCACAAAAATTACACTGAGGGCTAGCAGTTTGACTGGATTTATACCTGAAGAACTAGGCAATCTCACACATCTGAGAGAACTGGATCTCAGTAACAATCAATTGACTGGTCCTATACCCGCTAGCTTGGGAAATTTATCTTCGCTTTACAAGCTGAACCTTCAGGAAAATCAATTGACCGGGCCCATTCCGGCGAGTTTGGGAAATATGAAATTTCGAGTATCATTCGCCAAGGATCATACTTCGCACCGCAGCATGGTTGTTAGCTTCGAACTAGATCTTTCAGACAATCAATTGGATGGATTCATACCAGCCACTTTAATGAATGTGGCTGTCTCTTCTGTGGCATCTGATCCAGATGCCTACCGACTCTTCAAGCTTAAGCAATACGACAGGGCTAATGTTGACCCACAGTTCTACCTGGATCTTTCAAGCAATCAACTGACTGGGCCTATTCCAGAGAGCTTAGGGAATTTGACTTTCATAAGTTTTATTGAACTGTATAACAACTTTCTCAACGGCTCTATACCAGCATCTTTGGGTGCACTGACTTATCTGCATGTTCTGTCTATGGAAAACAATAGAATCTCCGGCAGTCTCCCACAAACACTAGGAAATTTGACAATCCTTAATTACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

299

Amino Acids

32.97

Weight (kDa)

6.95

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	86 - 145	6.9e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	1 cut(s)	258
AciI	CCGC	4 cut(s)	204, 256, 378, 508
AclWI	GGATC	4 cut(s)	351, 501, 605, 690
AcsI	RAATTY	5 cut(s)	86, 391, 470, 730, 874
AcuI	CTGAAG	2 cut(s)	327, 404
AfiI	CCNNNNNNNGG	2 cut(s)	189, 514
AflII	CTTAAG	2 cut(s)	140, 638
AgsI	TTSAA	5 cut(s)	91, 239, 634, 690, 755
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	9 cut(s)	14, 76, 107, 137, 384, 412, 525, 637, 723
AluI	AGCT	9 cut(s)	14, 76, 107, 137, 384, 412, 525, 637, 723
Alw21I	GWGCWC	2 cut(s)	139, 805
Alw26I	GTCTC	3 cut(s)	16, 598, 860
Alw44I	GTGCAC	1 cut(s)	801
AlwI	GGATC	4 cut(s)	351, 501, 605, 690
AoxI	GGCC	2 cut(s)	440, 707
ApaI	GGGCCC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	801
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	5 cut(s)	86, 391, 470, 730, 874
AspS9I	GGNCC	5 cut(s)	6, 368, 440, 441, 707
AsuC2I	CCSGG	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	528
AsuNHI	GCTAGC	2 cut(s)	281, 380
AvaII	GGWCC	2 cut(s)	6, 368
BaeGI	GKGCMC	2 cut(s)	444, 805
BanII	GRGCYC	2 cut(s)	139, 444
Bbv12I	GWGCWC	2 cut(s)	139, 805
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	793
BciT130I	CCWGG	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	3 cut(s)	16, 598, 860
BfaI	CTAG	5 cut(s)	282, 314, 381, 533, 869
BfrI	CTTAAG	2 cut(s)	140, 638
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	256, 511
BlsI	GCNGC	2 cut(s)	257, 512
Bme1390I	CCNGG	2 cut(s)	439, 680
Bme18I	GGWCC	2 cut(s)	6, 368
BmgT120I	GGNCC	5 cut(s)	6, 368, 440, 441, 707
BmiI	GGNNCC	2 cut(s)	7, 442
BmrFI	CCNGG	2 cut(s)	439, 680
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	3 cut(s)	607, 614, 800
BmtI	GCTAGC	2 cut(s)	285, 384
BmuI	ACTGGG	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	724
Bpu14I	TTCGAA	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 514
Bse1I	ACTGG	4 cut(s)	298, 345, 370, 709
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	189, 514
BseMII	CTCAG	4 cut(s)	86, 266, 323, 361
BseNI	ACTGG	4 cut(s)	298, 345, 370, 709
BseSI	GKGCMC	2 cut(s)	444, 805
BseXI	GCAGC	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	442, 709
BsiHKAI	GWGCWC	2 cut(s)	139, 805
BsiSI	CCGG	3 cut(s)	438, 449, 849
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	189, 514
BsmAI	GTCTC	3 cut(s)	16, 598, 860
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	442, 709
Bsp119I	TTCGAA	1 cut(s)	528
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	139, 444, 805
Bsp143I	GATC	5 cut(s)	343, 493, 535, 610, 682
BspACI	CCGC	4 cut(s)	204, 256, 378, 508
BspANI	GGCC	2 cut(s)	442, 709
BspCNI	CTCAG	4 cut(s)	85, 267, 324, 360
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	7, 442
BspOI	GCTAGC	2 cut(s)	285, 384
BspPI	GGATC	4 cut(s)	351, 501, 605, 690
BspT104I	TTCGAA	1 cut(s)	528
BspTI	CTTAAG	2 cut(s)	140, 638
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	298, 345, 370, 709
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	343, 493, 535, 610, 682
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	672, 759
Bst6I	CTCTTC	2 cut(s)	601, 635
BstAFI	CTTAAG	2 cut(s)	140, 638
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	283, 382
BstDEI	CTNAG	5 cut(s)	72, 275, 332, 347, 724
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	5 cut(s)	346, 496, 538, 613, 685
BstMAI	GTCTC	3 cut(s)	16, 598, 860
BstMBI	GATC	5 cut(s)	343, 493, 535, 610, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 409
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	2 cut(s)	437, 678
BstSLI	GKGCMC	2 cut(s)	444, 805
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	343, 535, 682
BstYI	RGATCY	3 cut(s)	343, 535, 682
BsuRI	GGCC	2 cut(s)	442, 709
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	272, 803
Cac8I	GCNNGC	2 cut(s)	283, 382
Cfr13I	GGNCC	5 cut(s)	6, 368, 440, 441, 707
CseI	GACGC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	2 cut(s)	514, 818
DdeI	CTNAG	5 cut(s)	72, 275, 332, 347, 724
DpnI	GATC	5 cut(s)	345, 495, 537, 612, 684
DpnII	GATC	5 cut(s)	343, 493, 535, 610, 682
Eam1104I	CTCTTC	2 cut(s)	601, 635
EarI	CTCTTC	2 cut(s)	601, 635
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	139, 444
Eco47I	GGWCC	2 cut(s)	6, 368
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	327, 404
EcoICRI	GAGCTC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	139, 444
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	517, 821
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	513, 817
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	256, 511
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	2 cut(s)	139, 444
Fsp4HI	GCNGC	2 cut(s)	256, 511
FspBI	CTAG	5 cut(s)	282, 314, 381, 533, 869
GluI	GCNGC	2 cut(s)	256, 511
HaeIII	GGCC	2 cut(s)	442, 709
HapII	CCGG	3 cut(s)	438, 449, 849
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	517, 821
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	2 cut(s)	12, 635
HinfI	GANTC	3 cut(s)	561, 627, 843
HpaII	CCGG	3 cut(s)	438, 449, 849
Hpy166II	GTNNAC	2 cut(s)	664, 803
Hpy188I	TCNGA	5 cut(s)	85, 99, 333, 544, 610
Hpy188III	TCNNGA	4 cut(s)	21, 422, 614, 716
Hpy8I	GTNNAC	2 cut(s)	664, 803
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	2 cut(s)	672, 759
HpyCH4V	TGCA	4 cut(s)	195, 231, 803, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 409
HpyF3I	CTNAG	5 cut(s)	72, 275, 332, 347, 724
Hsp92II	CATG	2 cut(s)	517, 821
Kzo9I	GATC	5 cut(s)	343, 493, 535, 610, 682
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	3 cut(s)	607, 614, 800
MaeI	CTAG	5 cut(s)	282, 314, 381, 533, 869
MaeIII	GTNAC	3 cut(s)	34, 259, 350
MalI	GATC	5 cut(s)	345, 495, 537, 612, 684
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	5 cut(s)	343, 493, 535, 610, 682
MboII	GAAGA	5 cut(s)	137, 320, 390, 588, 622
MfeI	CAATTG	3 cut(s)	359, 431, 551
MflI	RGATCY	3 cut(s)	343, 535, 682
MhlI	GDGCHC	3 cut(s)	139, 444, 805
MlyI	GAGTC	1 cut(s)	621
MnlI	CCTC	3 cut(s)	65, 193, 270
MseI	TTAA	5 cut(s)	141, 167, 578, 639, 888
MslI	CAYNNNNRTG	1 cut(s)	578
MspCI	CTTAAG	2 cut(s)	140, 638
MspI	CCGG	3 cut(s)	438, 449, 849
MspR9I	CCNGG	2 cut(s)	439, 680
MunI	CAATTG	3 cut(s)	359, 431, 551
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	201, 409
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	5 cut(s)	343, 493, 535, 610, 682
NheI	GCTAGC	2 cut(s)	281, 380
NlaIII	CATG	2 cut(s)	517, 821
NlaIV	GGNNCC	2 cut(s)	7, 442
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	821
NspV	TTCGAA	1 cut(s)	528
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	561, 843
PkrI	GCNGC	2 cut(s)	257, 512
PleI	GAGTC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	7, 442
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	5 cut(s)	6, 368, 440, 441, 707
PsuI	RGATCY	3 cut(s)	343, 535, 682
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	141, 167, 578, 639, 888
SatI	GCNGC	2 cut(s)	256, 511
Sau3AI	GATC	5 cut(s)	343, 493, 535, 610, 682
Sau96I	GGNCC	5 cut(s)	6, 368, 440, 441, 707
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	439, 680
SduI	GDGCHC	3 cut(s)	139, 444, 805
SfaNI	GCATC	3 cut(s)	607, 614, 800
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	2 cut(s)	6, 368
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	140, 638
SmoI	CTYRAG	2 cut(s)	140, 638
SsiI	CCGC	4 cut(s)	204, 256, 378, 508
SspMI	CTAG	5 cut(s)	282, 314, 381, 533, 869
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	437, 678
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	672, 759
TaqI	TCGA	4 cut(s)	20, 175, 475, 528
TaqII	GACCGA	1 cut(s)	23
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	561, 843
Tru1I	TTAA	5 cut(s)	141, 167, 578, 639, 888
Tru9I	TTAA	5 cut(s)	141, 167, 578, 639, 888
TscAI	CASTG	2 cut(s)	279, 810
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	6 cut(s)	6, 138, 482, 553, 596, 730
TspRI	CASTG	2 cut(s)	279, 810
Vha464I	CTTAAG	2 cut(s)	140, 638
VneI	GTGCAC	1 cut(s)	801
VpaK11BI	GGWCC	2 cut(s)	6, 368
XapI	RAATTY	5 cut(s)	86, 391, 470, 730, 874
XceI	RCATGY	1 cut(s)	821
XspI	CTAG	5 cut(s)	282, 314, 381, 533, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.