RchiOBHm_Chr1g0337731

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000236
Physical Location & Seq
Forward (+)
29643420 .. 29645463
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56561

Sequence Viewer

Length: 492 bp
ATGGTTCCAGCTTTTTTCCTTCTTCTCTCTTTCTTCTCCTCCATTGTTGATAGCTTGAGATCGTCAAGGTTTAGCTATGGCTCCCATGTTATCACTTTGTACATTGCGCTGATTACTGTGGCTAGCTTCAACCATTGTTTTCGTGTTGTTTTTATTGGTTTTCGCCTGGATGATGGGATGGCCGGGGAATACAGATCACTCAAGACAAACATAGGTCTAGAAAAAGCTGTCACCCTCAAACAATTAAAAGATGCTACTCGAAATTTTGGCCACGAAAATGAGATTGGTCGAGGGGGTTTTGGGACAGTATACAAGGCCGAATTGGAAGGTCGAACTGTAGCTGTGAAGAGACTTTCCTCTCATTCAGAGGAAAGGATTAGTGAATGGAAAAATGAATTTTATACCTTAAAATTAATGGATCATCAGAACATTGTTCAATTGATGGCCGTTTATAACCGAAAAGGCTTGCAAATGATTATATATGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

9.52

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 92 - 160 3.4e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 92 - 155 1.5e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccI GTMKAC 1 cut(s) 309
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 3 cut(s) 180, 268, 444
AcsI RAATTY 2 cut(s) 262, 395
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 2 cut(s) 130, 437
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 6 cut(s) 11, 54, 75, 126, 227, 341
AluI AGCT 6 cut(s) 11, 54, 75, 126, 227, 341
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 426
AoxI GGCC 4 cut(s) 180, 268, 315, 444
ApoI RAATTY 2 cut(s) 262, 395
AseI ATTAAT 1 cut(s) 413
AspLEI GCGC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 270
BccI CCATC 3 cut(s) 167, 172, 436
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 2 cut(s) 123, 218
BfmI CTRYAG 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 167, 184
BmiI GGNNCC 2 cut(s) 6, 82
BmrFI CCNGG 2 cut(s) 167, 184
BmsI GCATC 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 76, 185
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 175, 183
BseMI GCAATG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 28
BshFI GGCC 4 cut(s) 182, 270, 317, 446
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 4 cut(s) 182, 270, 317, 446
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 3 cut(s) 59, 194, 418
BspANI GGCC 4 cut(s) 182, 270, 317, 446
BspLI GGNNCC 2 cut(s) 6, 82
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 59, 194, 418
BssNAI GTATAC 1 cut(s) 310
Bst1107I GTATAC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 118, 307, 337
Bst6I CTCTTC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 124, 467
BstF5I GGATG 2 cut(s) 175, 183
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 62, 197, 421
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 3 cut(s) 59, 194, 418
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 165, 182
BstSFI CTRYAG 1 cut(s) 336
BstZ17I GTATAC 1 cut(s) 310
BsuRI GGCC 4 cut(s) 182, 270, 317, 446
BtsCI GGATG 2 cut(s) 175, 183
Cac8I GCNNGC 2 cut(s) 124, 467
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 86
CviQI GTAC 1 cut(s) 100
DpnI GATC 3 cut(s) 61, 196, 420
DpnII GATC 3 cut(s) 59, 194, 418
EaeI YGGCCR 3 cut(s) 180, 268, 444
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 89
FaiI YATR 9 cut(s) 78, 87, 212, 310, 402, 453, 479, 481, 483
FaqI GGGAC 1 cut(s) 316
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 309
FokI GGATG 2 cut(s) 182, 190
FspBI CTAG 2 cut(s) 123, 218
GlaI GCGC 1 cut(s) 108
HaeIII GGCC 4 cut(s) 182, 270, 317, 446
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 367, 426
Hpy188III TCNNGA 2 cut(s) 202, 218
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 29, 320
HpyCH4III ACNGT 3 cut(s) 118, 307, 337
HpyCH4V TGCA 2 cut(s) 469, 485
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 3 cut(s) 59, 194, 418
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 21, 152, 179, 196
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 123, 218
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 61, 196, 420
MboI GATC 3 cut(s) 59, 194, 418
MboII GAAGA 3 cut(s) 14, 25, 358
MfeI CAATTG 1 cut(s) 437
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 6 cut(s) 242, 262, 320, 395, 410, 437
MluNI TGGCCA 1 cut(s) 270
MnlI CCTC 5 cut(s) 49, 245, 284, 361, 367
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 3 cut(s) 245, 407, 413
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 167, 184
MunI CAATTG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 167
NciI CCSGG 1 cut(s) 184
NdeII GATC 3 cut(s) 59, 194, 418
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 6, 82
NmuCI GTSAC 1 cut(s) 229
PshBI ATTAAT 1 cut(s) 413
PsiI TTATAA 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 6, 82
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 3 cut(s) 245, 407, 413
Sau3AI GATC 3 cut(s) 59, 194, 418
ScrFI CCNGG 2 cut(s) 167, 184
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 55, 200
SmoI CTYRAG 2 cut(s) 55, 200
Sse9I AATT 6 cut(s) 242, 262, 320, 395, 410, 437
SspMI CTAG 2 cut(s) 123, 218
StyD4I CCNGG 2 cut(s) 165, 182
TaaI ACNGT 3 cut(s) 118, 307, 337
TaqI TCGA 3 cut(s) 259, 289, 331
TasI AATT 6 cut(s) 242, 262, 320, 395, 410, 437
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 3 cut(s) 245, 407, 413
Tru9I TTAA 3 cut(s) 245, 407, 413
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 408
VspI ATTAAT 1 cut(s) 413
XapI RAATTY 2 cut(s) 262, 395
XbaI TCTAGA 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 123, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.