Rroxscaffold_5G00334510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000236
Physical Location & Seq
Forward (+)
1781904 .. 1783628
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334510.1

Sequence Viewer

Length: 177 bp
ATGACAATTGAAGATAGGGAGAATCAAGCAACAATTGTCCTTCTTCGGAAACAAGCTGAACAGATATTTGGCATCACCGTCCTCAACCGGTCAACAAAACTTGTCTTTCCAAGTGAAGAAGCATTCCCGGTGGGGGATTTTTTGAGGAGTATGCTGCTGAAACAATTGGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.61

Weight (kDa)

5.26

Isoelectric Point (pI)

64.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 133
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 154
AsiGI ACCGGT 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 141
BcnI CCSGG 1 cut(s) 128
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 141
BshTI ACCGGT 1 cut(s) 87
BsiSI CCGG 2 cut(s) 88, 128
BslI CCNNNNNNNGG 1 cut(s) 133
BsmI GAATGC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 87
CspAI ACCGGT 1 cut(s) 87
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
FaiI YATR 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
HapII CCGG 2 cut(s) 88, 128
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 88, 128
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 79
LpnPI CCDG 2 cut(s) 101, 141
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 3 cut(s) 23, 35, 128
MfeI CAATTG 3 cut(s) 6, 33, 164
MluCI AATT 3 cut(s) 6, 33, 164
MnlI CCTC 2 cut(s) 92, 138
MspI CCGG 2 cut(s) 88, 128
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 3 cut(s) 6, 33, 164
Mva1269I GAATGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 170
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 87
PkrI GCNGC 1 cut(s) 156
SatI GCNGC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 128
SetI ASST 1 cut(s) 58
SfaNI GCATC 1 cut(s) 81
SgeI CNNG 7 cut(s) 38, 65, 100, 113, 123, 139, 140
Sse9I AATT 3 cut(s) 6, 33, 164
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 79
TasI AATT 3 cut(s) 6, 33, 164
TfiI GAWTC 1 cut(s) 22
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.