Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

6955846 .. 6957926

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGACCGAAGCTTCAGCGAGACTCGTCAGCTTTACTATTATAAGTATATGCCTCTTCTCTACTCTTTCTCAGCTTGGTTCTGAATTCAAATGTCAGAGTATAGCTCAAAAGTTGCCCGATGAAGAAGTGAGAGCTCTTAATCAAATAATAGATAAGTTGGAGTTCAGCAATGATATTAATCGAGTGCCATCTAAATCATTTTGCAAAAAGAGCGGTCGTGATGGCATCAGATGTAACTGCAGTTTTCAAAACGGCACCATTTGCCATGTCACAGAAATTGCACTGAAGGCTAGAAGTTTGACCGGAGTTATACCTGAAGAACTAGGCAATCTCACACATCTAAGGCAACTGGATCTTAGTAGGAATCAATTGACTGGTTCTATACCTGCTAGCTTGGGGAATTTATCTTCGTTGTACAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

8.59

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	90 - 141	6.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	86, 403
AcuI	CTGAAG	2 cut(s)	308, 339
AfaI	GTAC	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	91, 251
AluBI	AGCT	7 cut(s)	14, 33, 76, 107, 137, 396, 424
AluI	AGCT	7 cut(s)	14, 33, 76, 107, 137, 396, 424
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	363
ApoI	RAATTY	2 cut(s)	86, 403
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	6
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	2 cut(s)	199, 218
BceAI	ACGGC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	3 cut(s)	294, 326, 393
BfmI	CTRYAG	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	7, 259
BmsI	GCATC	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BsaBI	GATNNNNATC	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	357, 382
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	357, 382
Bsh1285I	CGRYCG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	7, 259
BspMAI	CTGCAG	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	397
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	357, 382
BssMI	GATC	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	72, 344, 359
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	355
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 264, 290
BstSFI	CTRYAG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	8 cut(s)	14, 33, 76, 107, 137, 293, 396, 424
CviKI_1	RGCY	8 cut(s)	14, 33, 76, 107, 137, 293, 396, 424
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	72, 344, 359
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	308, 339
EcoICRI	GAGCTC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	1 cut(s)	272
FaiI	YATR	7 cut(s)	44, 50, 52, 104, 270, 314, 386
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	139
FspBI	CTAG	3 cut(s)	294, 326, 393
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	24, 367
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	3 cut(s)	85, 99, 233
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	207, 243, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 264, 290
HpyF3I	CTNAG	3 cut(s)	72, 344, 359
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	319, 330, 338, 363, 402
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	3 cut(s)	294, 326, 393
MaeIII	GTNAC	2 cut(s)	236, 271
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	1 cut(s)	355
MboII	GAAGA	4 cut(s)	49, 137, 332, 402
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	4 cut(s)	86, 279, 371, 403
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	141, 180
MspI	CCGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	213, 264, 290
NdeII	GATC	1 cut(s)	355
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	7, 259
NmuCI	GTSAC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PshBI	ATTAAT	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	7, 259
PspPI	GGNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	141, 180
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	16, 35, 78, 109, 139, 319, 391, 398, 426
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	1 cut(s)	6
Sse9I	AATT	4 cut(s)	86, 279, 371, 403
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	3 cut(s)	294, 326, 393
SstI	GAGCTC	1 cut(s)	139
TaqI	TCGA	1 cut(s)	184
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	86, 279, 371, 403
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	141, 180
Tru9I	TTAA	2 cut(s)	141, 180
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	6
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	2 cut(s)	86, 403
XspI	CTAG	3 cut(s)	294, 326, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.