Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

7027009 .. 7029355

Gene Structure 2347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTATCATTAACGAACATAGACTTGAGCTTCAACAGGTTAACGGGTAGAATCCCAGATTCTTTGAAAAACTTAAATGTAACTCACATGTCTTTTTCAAAAAATATGCTTACTGGGAAAATTCCTGATTGGATTCAAAATGCAGTATGGAGCAAGATGGATTTTTCATACAATAATTTTTCAAAGCTAACCTTTAAACCGTCACCCAATCTACAACTGAATTTGTTTTCCTCCTGCTGCAACTCCTCAACTTGTCTGCCAAATTCGACAGACACAATCAAGGAGAAGTCTTGTCCCCGAAAACCTAAGTATCATTCATTGTTCATAAATTGTGGCGGTGGGGAAACACGTGGTGCTGATGGAAATCTTTATGATCAAGATAATGATACGTTACTATATTACCAGAGTCCAAAAGGAAACTGGGCTCGGAGTAGTGTTGGAAACAGCTACGACTATGCTTCCGATGGCAATTCTAGTAAATTGTTAAAAAACGTTAGATGTGGGCTTTCATCTGAAGCACGTTTATACGATACAGCTCGCATTTCCTTTGTCTCTTTAAAATATTACGGGTTCTGTTTACGTAAAGGCAAATACCGTGTAGCACTTCACTTTGCTGAGATTGTTGATGAAGTTACAGATATTCTTGAGGATATTGATTTTAGAAGTACAGATAAACGCACATTTGATGTATATATTCAGGGTAAGAGACGACTAAAGGATTTCAACATTATAGACAATGCAGGAGGTCCGAATAAAGAATATATACAAACTTTCACGCATGTTTATGTAAACGATAGTACATTAGAGATCCACTTCTACTCTCGATCCGCTGGAGAAGGGACACTTGATGGACCTCTCATATCTGCTATAACCGTAACTCCAGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

296

Amino Acids

33.34

Weight (kDa)

8.55

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	106 - 290	6.2e-29	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	336, 828
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	2 cut(s)	802, 819
AcsI	RAATTY	3 cut(s)	120, 220, 262
AcuI	CTGAAG	1 cut(s)	534
AcvI	CACGTG	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	667, 799
AflIII	ACRYGT	2 cut(s)	87, 347
AgsI	TTSAA	6 cut(s)	34, 67, 99, 137, 183, 724
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	30, 187, 447, 536
AluI	AGCT	4 cut(s)	30, 187, 447, 536
Alw26I	GTCTC	2 cut(s)	556, 700
AlwI	GGATC	2 cut(s)	802, 819
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	3 cut(s)	120, 220, 262
AspS9I	GGNCC	3 cut(s)	746, 851, 884
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	746, 851, 884
BaeI	ACNNNNGTAYC	2 cut(s)	293, 326
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	4 cut(s)	151, 353, 458, 842
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	556, 700
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	3 cut(s)	746, 851, 884
BmgT120I	GGNCC	3 cut(s)	746, 851, 884
BmrFI	CCNGG	1 cut(s)	882
BmrI	ACTGGG	2 cut(s)	123, 430
BmuI	ACTGGG	2 cut(s)	123, 430
BpmI	CTGGAG	2 cut(s)	852, 864
BpuEI	CTTGAG	2 cut(s)	46, 665
BsaAI	YACGTR	2 cut(s)	350, 581
BsaBI	GATNNNNATC	1 cut(s)	363
BsaXI	ACNNNNNCTCC	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	118, 425
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	882
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	118, 425
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	279, 853
BsmAI	GTCTC	2 cut(s)	556, 700
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	2 cut(s)	279, 853
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	373, 807, 824
BspACI	CCGC	2 cut(s)	336, 828
BspCNI	CTCAG	1 cut(s)	607
BspPI	GGATC	2 cut(s)	802, 819
BsrI	ACTGG	2 cut(s)	118, 425
BssMI	GATC	3 cut(s)	373, 807, 824
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	3 cut(s)	201, 596, 874
BstBAI	YACGTR	2 cut(s)	350, 581
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	306, 615
BstKTI	GATC	3 cut(s)	376, 810, 827
BstMAI	GTCTC	2 cut(s)	556, 700
BstMBI	GATC	3 cut(s)	373, 807, 824
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	2 cut(s)	91, 782
BstSCI	CCNGG	1 cut(s)	880
BstSNI	TACGTA	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
Cac8I	GCNNGC	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	746, 851, 884
Csp6I	GTAC	2 cut(s)	666, 798
CviAII	CATG	2 cut(s)	88, 779
CviJI	RGCY	6 cut(s)	30, 187, 425, 447, 505, 536
CviKI_1	RGCY	6 cut(s)	30, 187, 425, 447, 505, 536
CviQI	GTAC	2 cut(s)	666, 798
DdeI	CTNAG	2 cut(s)	306, 615
DpnI	GATC	3 cut(s)	375, 809, 826
DpnII	GATC	3 cut(s)	373, 807, 824
DraI	TTTAAA	2 cut(s)	196, 558
DraIII	CACNNNGTG	1 cut(s)	353
Eco105I	TACGTA	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	3 cut(s)	746, 851, 884
Eco57I	CTGAAG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	2 cut(s)	91, 782
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 828, 860
FaqI	GGGAC	2 cut(s)	279, 853
FatI	CATG	2 cut(s)	87, 778
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	1 cut(s)	238
GsuI	CTGGAG	2 cut(s)	852, 864
Hin1II	CATG	2 cut(s)	91, 782
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	4 cut(s)	51, 59, 133, 406
HpaI	GTTAAC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	42, 578, 790
Hpy188I	TCNGA	4 cut(s)	429, 463, 514, 750
Hpy188III	TCNNGA	4 cut(s)	125, 377, 644, 822
Hpy8I	GTNNAC	3 cut(s)	42, 578, 790
HpyAV	CCTTC	1 cut(s)	830
HpyCH4III	ACNGT	3 cut(s)	201, 596, 874
HpyCH4IV	ACGT	5 cut(s)	349, 389, 492, 520, 580
HpyCH4V	TGCA	3 cut(s)	143, 240, 740
HpyF3I	CTNAG	2 cut(s)	306, 615
HpySE526I	ACGT	5 cut(s)	349, 389, 492, 520, 580
Hsp92II	CATG	2 cut(s)	91, 782
Ksp22I	TGATCA	1 cut(s)	373
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	373, 807, 824
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	5 cut(s)	349, 389, 492, 520, 580
MaeIII	GTNAC	5 cut(s)	79, 201, 390, 631, 874
MalI	GATC	3 cut(s)	375, 809, 826
MboI	GATC	3 cut(s)	373, 807, 824
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	7 cut(s)	120, 175, 220, 262, 328, 469, 479
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	241, 256, 640, 737, 864
MseI	TTAA	6 cut(s)	11, 41, 74, 195, 485, 557
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	830
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	373, 807, 824
NlaIII	CATG	2 cut(s)	91, 782
NmuCI	GTSAC	1 cut(s)	201
NspI	RCATGY	2 cut(s)	91, 782
PciI	ACATGT	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	51, 59, 133
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	414
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	414
Ppu21I	YACGTR	2 cut(s)	350, 581
PscI	ACATGT	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	880
PspCI	CACGTG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	880
PspPI	GGNCC	3 cut(s)	746, 851, 884
PsuI	RGATCY	1 cut(s)	807
RsaI	GTAC	2 cut(s)	667, 799
RsaNI	GTAC	2 cut(s)	666, 798
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	6 cut(s)	11, 41, 74, 195, 485, 557
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	373, 807, 824
Sau96I	GGNCC	3 cut(s)	746, 851, 884
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	1 cut(s)	427
SinI	GGWCC	3 cut(s)	746, 851, 884
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	25, 644
SmoI	CTYRAG	2 cut(s)	25, 644
SnaBI	TACGTA	1 cut(s)	581
Sse9I	AATT	7 cut(s)	120, 175, 220, 262, 328, 469, 479
SsiI	CCGC	2 cut(s)	336, 828
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	880
TaaI	ACNGT	3 cut(s)	201, 596, 874
TaiI	ACGT	5 cut(s)	352, 392, 495, 523, 583
TaqI	TCGA	2 cut(s)	266, 823
TasI	AATT	7 cut(s)	120, 175, 220, 262, 328, 469, 479
TatI	WGTACW	2 cut(s)	665, 797
TfiI	GAWTC	3 cut(s)	51, 59, 133
Tru1I	TTAA	6 cut(s)	11, 41, 74, 195, 485, 557
Tru9I	TTAA	6 cut(s)	11, 41, 74, 195, 485, 557
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	5 cut(s)	156, 306, 313, 498, 642
VpaK11BI	GGWCC	3 cut(s)	746, 851, 884
XapI	RAATTY	3 cut(s)	120, 220, 262
XceI	RCATGY	2 cut(s)	91, 782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	417
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.