Rmu_sc0001706.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001706.1
OG0000236
Physical Location & Seq
Forward (+)
54426 .. 58003
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001706.1_g000014.1.cds

Sequence Viewer

Length: 846 bp
atgggtactggagcttcggcgagacttgtcagtgaccttgtaattctatgcttcatctttactctttggcagcttggttcagaattcaaatatcagagtatagctcaaccgttgcccgacgaagaaggtaaagctgaaacgttgccccaagaagaagagagtgcttttaaacaaatagcatatgagttggggttaaagttatttggaggctcaattaattgcacggagaggagctttggaatcacatgtgactgcaatgacaccatttgccacattacagaaattgcattgattgatagcggtttgaatggagttatacctgaagaactagccaatctcgcacatttggagagcctcaatctcgagaaaaatcaattgactggttccatacctgctagcttggggaatttatcttcactccacaacctggatctttcgaacaatcaattgaccgggcctattccagcgagtttggggaatttgaaatttaaagcaataaaaataagacaagaagacagtggtacccacagtgccggggctgggatcgttcctatacacagaatcacagatgaaggaatggtggagatcaaaaatggggttcaaagcacagacccacagatgaactggcctcacagcgacacaactgcaacccctctctctccgggagtcgccagcgtcagtgtcaatgaccaccccccaccatatcacatccctcattcatcacctaacccgactctcaccgcaaagtatggaactaagcgcgactcgtctccggcgaggaattccggcaagcgcaagtcccccccctccctgctatactttacttacaaccaccaccaccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

30.38

Weight (kDa)

5.81

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 427
AccII CGCG 1 cut(s) 762
AciI CCGC 3 cut(s) 300, 741, 841
AclI AACGTT 1 cut(s) 140
AclWI GGATC 2 cut(s) 438, 551
AcsI RAATTY 5 cut(s) 83, 406, 478, 485, 781
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 2 cut(s) 7, 523
AfiI CCNNNNNNNGG 2 cut(s) 427, 540
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 4 cut(s) 88, 307, 484, 602
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 6 cut(s) 14, 73, 104, 134, 234, 399
AluI AGCT 6 cut(s) 14, 73, 104, 134, 234, 399
Alw26I GTCTC 2 cut(s) 16, 774
AlwI GGATC 2 cut(s) 438, 551
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 2 cut(s) 455, 626
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 5 cut(s) 83, 406, 478, 485, 781
AseI ATTAAT 1 cut(s) 216
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 2 cut(s) 762, 795
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 3 cut(s) 454, 535, 663
AsuHPI GGTGA 2 cut(s) 714, 730
AsuII TTCGAA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 505, 538
BanI GGYRCC 1 cut(s) 521
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 3 cut(s) 454, 535, 663
BcoDI GTCTC 2 cut(s) 16, 774
BfaI CTAG 3 cut(s) 329, 396, 844
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 4 cut(s) 428, 454, 535, 663
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 385, 523
BmrFI CCNGG 4 cut(s) 428, 454, 535, 663
BmtI GCTAGC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpmI CTGGAG 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 437
BpuMI CCSGG 3 cut(s) 454, 535, 663
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 540
Bse1I ACTGG 3 cut(s) 13, 385, 629
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 427, 540
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 3 cut(s) 13, 385, 629
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 2 cut(s) 457, 628
BshNI GGYRCC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 5 cut(s) 453, 534, 662, 773, 786
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 2 cut(s) 427, 540
BsmAI GTCTC 2 cut(s) 16, 774
BsmBI CGTCTC 1 cut(s) 774
BsmFI GGGAC 1 cut(s) 784
BsnI GGCC 2 cut(s) 457, 628
BsoBI CYCGRG 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 430, 543, 585
BspACI CCGC 3 cut(s) 300, 741, 841
BspANI GGCC 2 cut(s) 457, 628
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 385, 523
BspMI ACCTGC 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 2 cut(s) 438, 551
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 3 cut(s) 13, 385, 629
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 3 cut(s) 430, 543, 585
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 111, 518, 530
Bst6I CTCTTC 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 397, 673, 791
BstDEI CTNAG 1 cut(s) 756
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 2 cut(s) 762, 795
BstKTI GATC 3 cut(s) 433, 546, 588
BstMAI GTCTC 2 cut(s) 16, 774
BstMBI GATC 3 cut(s) 430, 543, 585
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 4 cut(s) 426, 452, 533, 661
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 2 cut(s) 457, 628
BtsCI GGATG 1 cut(s) 708
BtsIMutI CAGTG 4 cut(s) 37, 523, 535, 685
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 397, 673, 791
CfoI GCGC 2 cut(s) 762, 795
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 664
Csp6I GTAC 2 cut(s) 6, 522
CviAII CATG 1 cut(s) 246
CviQI GTAC 2 cut(s) 6, 522
DdeI CTNAG 1 cut(s) 756
DpnI GATC 3 cut(s) 432, 545, 587
DpnII GATC 3 cut(s) 430, 543, 585
DraI TTTAAA 2 cut(s) 169, 490
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 362
EcoRI GAATTC 2 cut(s) 83, 781
EcoRII CCWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 774
FaeI CATG 1 cut(s) 249
FaqI GGGAC 1 cut(s) 784
FatI CATG 1 cut(s) 245
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 3 cut(s) 329, 396, 844
GlaI GCGC 2 cut(s) 761, 794
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 457, 628
HapII CCGG 5 cut(s) 453, 534, 662, 773, 786
HgaI GACGC 1 cut(s) 664
HhaI GCGC 2 cut(s) 762, 795
Hin1II CATG 1 cut(s) 249
Hin6I GCGC 2 cut(s) 760, 793
HinP1I GCGC 2 cut(s) 760, 793
HinfI GANTC 5 cut(s) 240, 561, 666, 733, 764
HpaII CCGG 5 cut(s) 453, 534, 662, 773, 786
HphI GGTGA 2 cut(s) 714, 730
Hpy188I TCNGA 2 cut(s) 82, 96
Hpy188III TCNNGA 2 cut(s) 362, 364
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 119, 566
HpyCH4III ACNGT 3 cut(s) 111, 518, 530
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 222, 255, 287, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 756
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 249
HspAI GCGC 2 cut(s) 760, 793
KpnI GGTACC 1 cut(s) 525
Kzo9I GATC 3 cut(s) 430, 543, 585
LmnI GCTCC 2 cut(s) 11, 231
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 3 cut(s) 329, 396, 844
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 32, 248
MalI GATC 3 cut(s) 432, 545, 587
MboI GATC 3 cut(s) 430, 543, 585
MboII GAAGA 6 cut(s) 134, 164, 167, 335, 405, 524
MfeI CAATTG 2 cut(s) 374, 446
MflI RGATCY 1 cut(s) 430
MlyI GAGTC 3 cut(s) 675, 727, 758
MnlI CCTC 8 cut(s) 200, 222, 365, 639, 663, 723, 771, 817
MseI TTAA 4 cut(s) 168, 194, 216, 489
MspI CCGG 5 cut(s) 453, 534, 662, 773, 786
MspR9I CCNGG 4 cut(s) 428, 454, 535, 663
MunI CAATTG 2 cut(s) 374, 446
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 3 cut(s) 454, 535, 663
NdeI CATATG 1 cut(s) 181
NdeII GATC 3 cut(s) 430, 543, 585
NheI GCTAGC 1 cut(s) 395
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 2 cut(s) 385, 523
NmuCI GTSAC 2 cut(s) 32, 248
NspI RCATGY 1 cut(s) 249
NspV TTCGAA 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 362
PciI ACATGT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 773
PfeI GAWTC 2 cut(s) 240, 561
PflMI CCANNNNNTGG 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 3 cut(s) 674, 727, 758
PpsI GAGTC 3 cut(s) 674, 727, 758
PscI ACATGT 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 385, 523
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 2 cut(s) 7, 523
RsaNI GTAC 2 cut(s) 6, 522
SaqAI TTAA 4 cut(s) 168, 194, 216, 489
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 430, 543, 585
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 3 cut(s) 675, 727, 758
ScrFI CCNGG 4 cut(s) 428, 454, 535, 663
Sfr274I CTCGAG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 3 cut(s) 300, 741, 841
SspMI CTAG 3 cut(s) 329, 396, 844
StyD4I CCNGG 4 cut(s) 426, 452, 533, 661
TaaI ACNGT 3 cut(s) 111, 518, 530
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 363, 437
TfiI GAWTC 2 cut(s) 240, 561
Tru1I TTAA 4 cut(s) 168, 194, 216, 489
Tru9I TTAA 4 cut(s) 168, 194, 216, 489
TscAI CASTG 4 cut(s) 37, 523, 535, 685
TseFI GTSAC 2 cut(s) 32, 248
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 2 cut(s) 32, 248
TspDTI ATGAA 4 cut(s) 43, 585, 635, 708
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 4 cut(s) 37, 523, 535, 685
Van91I CCANNNNNTGG 1 cut(s) 427
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 5 cut(s) 83, 406, 478, 485, 781
XceI RCATGY 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 362
XspI CTAG 3 cut(s) 329, 396, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.