Rh4AG037900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000236
Physical Location & Seq
Reverse (-)
8066318 .. 8078031
11714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG037900.1

Sequence Viewer

Length: 1005 bp
ATGCAATTATATGCTGGCCTGCCTGCTAAGCGGTGGACAGCCGAAATGCTAAATCAATTAGATCACATTTTGACGTTACAATATCGATCTTTATTATATCAGTATTTATCCTCCATAAAGCTTATCCTTAAAGCTTTATCAGCTGCGAATCTTATCCTTCATCTTCTTTCTAGTTGCTCTGTTTCTTCCATTGATCTGTCCTCAAGAGAATTTGTGGCTCCCGATTCTTTACGAAAATCAATTGACGGGGCCCATTCCAGCGAGTTTGGGAAATATGAAATTTCAAGTGGATCTTTCACACAATCAACTGATTGGGCCTATACCAGAGAGCTTAGGGAATTTGTCTTTCATTGGTTCTATGGTAAGAGACGACTGAAGGATTTCAACATTATAGACAATGCAGGAGGTCCGAATAAAGAATATATAAAAAATTTCACGCATGTTTATGTAAACGATAGTACATTAGAGATCCACTTCTACTCTCGATCGGCTGGAGAAGGGACACTTGATGGACCTCTCATATCTGCTATAACCGTAACTCCAGAGTACAAGCAACAACTATCTCCTTTGCAAACAGCGCTCATTACTGTGGCTTCAATCATAGTTTTCTTGTTGCTTTTATTACTTTTTGCCTGGATGATGGGATGGCTGGGGAATACAGATCACTTACAAGAAATAGATATAGGTATAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGCAAGAGGAATGAGATTGCTCAAGGGGGTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGGAAAATTGTAGCCGTGAAGAAACTTCGCTCTCATTGCCAGGAAAGGATCAATGAGTTCATAAATGAATTTTATACCTTAAAAGCAATGAGTCAAGAGAACCTTGTTCAGTTGCTGGACATTTACAACGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGGAGAACAACTCCCTTACACATGCCTTATTTGGTAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

334

Amino Acids

38.07

Weight (kDa)

7.76

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 247 - 330 2.2e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 249 - 330 3.3e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 31
AclWI GGATC 3 cut(s) 298, 463, 854
AcsI RAATTY 7 cut(s) 209, 279, 338, 430, 733, 866, 998
AcuI CTGAAG 2 cut(s) 395, 810
AfaI GTAC 2 cut(s) 460, 548
AfeI AGCGCT 1 cut(s) 579
AgsI TTSAA 3 cut(s) 285, 385, 597
AjnI CCWGG 2 cut(s) 632, 837
AluBI AGCT 4 cut(s) 121, 134, 143, 331
AluI AGCT 4 cut(s) 121, 134, 143, 331
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 3 cut(s) 298, 463, 854
AlwNI CAGNNNCTG 1 cut(s) 913
Aor51HI AGCGCT 1 cut(s) 579
AoxI GGCC 4 cut(s) 16, 249, 315, 934
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 7 cut(s) 209, 279, 338, 430, 733, 866, 998
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 6 cut(s) 249, 250, 315, 407, 512, 774
AsuHPI GGTGA 1 cut(s) 694
AvaII GGWCC 3 cut(s) 407, 512, 774
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 130
BccI CCATC 3 cut(s) 503, 634, 639
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 2 cut(s) 634, 839
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 581
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 634, 839
Bme18I GGWCC 3 cut(s) 407, 512, 774
BmgT120I GGNCC 6 cut(s) 249, 250, 315, 407, 512, 774
BmiI GGNNCC 4 cut(s) 219, 250, 251, 775
BmrFI CCNGG 2 cut(s) 634, 839
BmsI GCATC 1 cut(s) 712
BplI GAGNNNNNCTC 2 cut(s) 956, 988
BpmI CTGGAG 2 cut(s) 513, 525
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 187, 744
Bsa29I ATCGAT 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bse3DI GCAATG 2 cut(s) 832, 891
BseBI CCWGG 2 cut(s) 634, 839
BseCI ATCGAT 1 cut(s) 85
BseGI GGATG 2 cut(s) 642, 650
BseMI GCAATG 2 cut(s) 832, 891
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 649
Bsh1285I CGRYCG 1 cut(s) 488
BshFI GGCC 4 cut(s) 18, 251, 317, 936
BshVI ATCGAT 1 cut(s) 85
BsiEI CGRYCG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 514, 787
BsmAI GTCTC 1 cut(s) 361
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 514, 787
BsnI GGCC 4 cut(s) 18, 251, 317, 936
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 1 cut(s) 31
BspANI GGCC 4 cut(s) 18, 251, 317, 936
BspDI ATCGAT 1 cut(s) 85
BspLI GGNNCC 4 cut(s) 219, 250, 251, 775
BspPI GGATC 3 cut(s) 298, 463, 854
BsrDI GCAATG 2 cut(s) 832, 891
BssMI GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
Bst2UI CCWGG 2 cut(s) 634, 839
Bst4CI ACNGT 3 cut(s) 535, 589, 778
BstC8I GCNNGC 4 cut(s) 16, 20, 24, 938
BstDEI CTNAG 2 cut(s) 27, 332
BstF5I GGATG 2 cut(s) 642, 650
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 8 cut(s) 64, 89, 196, 293, 471, 488, 664, 849
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
BstMCI CGRYCG 1 cut(s) 488
BstMWI GCNNNNNNNGC 4 cut(s) 28, 140, 577, 834
BstNI CCWGG 2 cut(s) 634, 839
BstNSI RCATGY 2 cut(s) 443, 986
BstSCI CCNGG 2 cut(s) 632, 837
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 290, 468
BstYI RGATCY 2 cut(s) 290, 468
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 4 cut(s) 18, 251, 317, 936
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 2 cut(s) 642, 650
Cac8I GCNNGC 4 cut(s) 16, 20, 24, 938
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 6 cut(s) 249, 250, 315, 407, 512, 774
ClaI ATCGAT 1 cut(s) 85
Csp6I GTAC 2 cut(s) 459, 547
CviAII CATG 2 cut(s) 440, 983
CviQI GTAC 2 cut(s) 459, 547
DdeI CTNAG 2 cut(s) 27, 332
DpnI GATC 8 cut(s) 63, 88, 195, 292, 470, 487, 663, 848
DpnII GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
Eco147I AGGCCT 1 cut(s) 936
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 407, 512, 774
Eco47III AGCGCT 1 cut(s) 579
Eco57I CTGAAG 2 cut(s) 395, 810
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 632, 837
EcoT38I GRGCYC 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 2 cut(s) 443, 986
FalI AAGNNNNNCTT 6 cut(s) 277, 309, 489, 521, 885, 917
FaqI GGGAC 2 cut(s) 514, 787
FatI CATG 2 cut(s) 439, 982
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 2 cut(s) 649, 657
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 653
GsuI CTGGAG 2 cut(s) 513, 525
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 4 cut(s) 18, 251, 317, 936
HhaI GCGC 1 cut(s) 580
Hin1II CATG 2 cut(s) 443, 986
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 2 cut(s) 119, 132
HinfI GANTC 3 cut(s) 148, 224, 889
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 3 cut(s) 36, 451, 781
Hpy188I TCNGA 2 cut(s) 411, 732
Hpy188III TCNNGA 5 cut(s) 204, 221, 483, 542, 893
Hpy8I GTNNAC 3 cut(s) 36, 451, 781
HpyAV CCTTC 3 cut(s) 167, 370, 491
HpyCH4III ACNGT 3 cut(s) 535, 589, 778
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 5 cut(s) 4, 401, 571, 796, 940
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 140, 577, 834
HpyF3I CTNAG 2 cut(s) 27, 332
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 2 cut(s) 443, 986
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 712
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 75, 535, 700
MalI GATC 8 cut(s) 63, 88, 195, 292, 470, 487, 663, 848
MboI GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
MboII GAAGA 3 cut(s) 155, 177, 829
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 2 cut(s) 290, 468
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 1 cut(s) 898
MnlI CCTC 6 cut(s) 121, 211, 398, 525, 716, 738
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 4 cut(s) 129, 716, 878, 1003
MslI CAYNNNNRTG 2 cut(s) 444, 587
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 634, 839
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 2 cut(s) 634, 839
MwoI GCNNNNNNNGC 4 cut(s) 28, 140, 577, 834
NdeII GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
NlaIII CATG 2 cut(s) 443, 986
NlaIV GGNNCC 4 cut(s) 219, 250, 251, 775
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 2 cut(s) 443, 986
PceI AGGCCT 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 148, 224
PkrI GCNGC 1 cut(s) 145
Ple19I CGATCG 1 cut(s) 488
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
Psp6I CCWGG 2 cut(s) 632, 837
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 2 cut(s) 632, 837
PspN4I GGNNCC 4 cut(s) 219, 250, 251, 775
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 6 cut(s) 249, 250, 315, 407, 512, 774
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 290, 468
PvuI CGATCG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 2 cut(s) 460, 548
RsaNI GTAC 2 cut(s) 459, 547
RseI CAYNNNNRTG 2 cut(s) 444, 587
SaqAI TTAA 4 cut(s) 129, 716, 878, 1003
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 8 cut(s) 61, 86, 193, 290, 468, 485, 661, 846
Sau96I GGNCC 6 cut(s) 249, 250, 315, 407, 512, 774
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 2 cut(s) 634, 839
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 1 cut(s) 712
SinI GGWCC 3 cut(s) 407, 512, 774
SmiMI CAYNNNNRTG 2 cut(s) 444, 587
SmlI CTYRAG 2 cut(s) 202, 759
SmoI CTYRAG 2 cut(s) 202, 759
SseBI AGGCCT 1 cut(s) 936
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 936
StyD4I CCNGG 2 cut(s) 632, 837
TaaI ACNGT 3 cut(s) 535, 589, 778
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 85, 484
TatI WGTACW 2 cut(s) 458, 546
TfiI GAWTC 2 cut(s) 148, 224
Tru1I TTAA 4 cut(s) 129, 716, 878, 1003
Tru9I TTAA 4 cut(s) 129, 716, 878, 1003
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 6 cut(s) 149, 291, 338, 847, 879, 969
VpaK11BI GGWCC 3 cut(s) 407, 512, 774
XapI RAATTY 7 cut(s) 209, 279, 338, 430, 733, 866, 998
XceI RCATGY 2 cut(s) 443, 986
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.