RchiOBHm_Chr1g0337521

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
29360601 .. 29361631
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56541

Sequence Viewer

Length: 636 bp
ATGGAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAATAACTCCCTTGCCCACGCCTAATTTGACTCAAAGCTCAAATTGCAACTTGATTGGAAAGCAAAGGTGTAAAATTTGCTTGGGAATAGCAAGGGGCTTGGTGTATCTACACAAGCATAGGCTGCAGACGGTTCAGAGGGATATTAAAGCTGCTAATATTCTTCTTGATGGAAACCTTGAGGCTAAAATTTCAGACTTCGGGTTGGCAAGCCTTTACACTGAAGATAATCAATTCGAGTTCATCAAAGTAGAAGTGCCACAGGGATATATAGCACCAGAGTATGTTCGAGGAATTGTAACATTTAAAGCTGATGTGTACAGTTTCGGGGTAGTTCTACATGAAACTGCTTATCATTTACATGGAAAAGGAAGGCTGTTGGACTTGATTGACAGAAACTTGTCGGGCAGTTATGACGCAAAAGAAGCCATTATCATCTTAAACTTAGCAGTTAAGTGCACCAGTACAGCTCCAGCCGTGAGGCCTACTATGTCTGATGTTGTTAGTGTACTTGTTGGTGACAAAAGAATCGATGAGATTTGCCCCTCTGCCCCAAATGATAATCCCATTGCTCAAGTTGATTCCTCTGCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

211

Amino Acids

23.09

Weight (kDa)

6.93

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 30 - 183 1.2e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 34 - 130 2e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 114, 228
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 3 cut(s) 359, 505, 549
AluBI AGCT 4 cut(s) 78, 191, 350, 509
AluI AGCT 4 cut(s) 78, 191, 350, 509
Alw21I GWGCWC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 496
AoxI GGCC 2 cut(s) 9, 521
ApaLI GTGCAC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 163, 191
ApoI RAATTY 2 cut(s) 114, 228
AsuHPI GGTGA 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 150, 178
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 500
BfmI CTRYAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 164, 192
BlsI GCNGC 2 cut(s) 165, 193
BpmI CTGGAG 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 239, 597
Bsa29I ATCGAT 1 cut(s) 570
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 570
BseMI GCAATG 1 cut(s) 606
BseNI ACTGG 1 cut(s) 501
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 2 cut(s) 150, 178
BshFI GGCC 2 cut(s) 11, 523
BshVI ATCGAT 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 500
BsnI GGCC 2 cut(s) 11, 523
Bsp1286I GDGCHC 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 357
BspANI GGCC 2 cut(s) 11, 523
BspDI ATCGAT 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 606
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 172, 362
BstAPI GCANNNNNTGC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 13, 250
BstDEI CTNAG 1 cut(s) 484
BstMWI GCNNNNNNNGC 3 cut(s) 84, 163, 464
BstSFI CTRYAG 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 150, 178
Bsu15I ATCGAT 1 cut(s) 570
BsuRI GGCC 2 cut(s) 11, 523
BsuTUI ATCGAT 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 13, 250
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 1 cut(s) 464
Csp6I GTAC 3 cut(s) 358, 504, 548
CviAII CATG 2 cut(s) 380, 401
CviQI GTAC 3 cut(s) 358, 504, 548
DdeI CTNAG 1 cut(s) 484
DraI TTTAAA 1 cut(s) 346
Eco147I AGGCCT 2 cut(s) 11, 523
Eco57I CTGAAG 1 cut(s) 282
FaeI CATG 2 cut(s) 383, 404
FatI CATG 2 cut(s) 379, 400
Fnu4HI GCNGC 2 cut(s) 164, 192
Fsp4HI GCNGC 2 cut(s) 164, 192
GluI GCNGC 2 cut(s) 164, 192
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 11, 523
HgaI GACGC 1 cut(s) 464
Hin1II CATG 2 cut(s) 383, 404
HinfI GANTC 3 cut(s) 70, 567, 620
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 3 cut(s) 358, 498, 548
Hpy188I TCNGA 3 cut(s) 177, 235, 535
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 3 cut(s) 358, 498, 548
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 2 cut(s) 172, 362
HpyCH4V TGCA 5 cut(s) 15, 39, 87, 166, 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 163, 464
HpyF3I CTNAG 1 cut(s) 484
Hsp92II CATG 2 cut(s) 383, 404
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 5 cut(s) 25, 287, 330, 514, 525
Lsp1109I GCAGC 2 cut(s) 150, 178
MaeIII GTNAC 2 cut(s) 337, 557
MboII GAAGA 2 cut(s) 194, 275
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 6 cut(s) 64, 82, 114, 228, 272, 333
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 6 cut(s) 171, 214, 323, 513, 595, 634
MseI TTAA 4 cut(s) 186, 345, 479, 492
MslI CAYNNNNRTG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 84, 163, 464
NlaIII CATG 2 cut(s) 383, 404
NmuCI GTSAC 1 cut(s) 557
PceI AGGCCT 2 cut(s) 11, 523
PfeI GAWTC 2 cut(s) 567, 620
PkrI GCNGC 2 cut(s) 165, 193
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 168
RsaI GTAC 3 cut(s) 359, 505, 549
RsaNI GTAC 3 cut(s) 358, 504, 548
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 4 cut(s) 186, 345, 479, 492
SatI GCNGC 2 cut(s) 164, 192
SchI GAGTC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 500
SetI ASST 6 cut(s) 80, 110, 193, 219, 352, 511
SfcI CTRYAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 218, 612
SmoI CTYRAG 2 cut(s) 218, 612
Sse9I AATT 6 cut(s) 64, 82, 114, 228, 272, 333
SseBI AGGCCT 2 cut(s) 11, 523
SspI AATATT 1 cut(s) 199
StuI AGGCCT 2 cut(s) 11, 523
TaaI ACNGT 2 cut(s) 172, 362
TaqI TCGA 3 cut(s) 276, 328, 570
TasI AATT 6 cut(s) 64, 82, 114, 228, 272, 333
TatI WGTACW 3 cut(s) 357, 503, 547
TfiI GAWTC 2 cut(s) 567, 620
Tru1I TTAA 4 cut(s) 186, 345, 479, 492
Tru9I TTAA 4 cut(s) 186, 345, 479, 492
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 163, 191
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 44, 271, 396
TspRI CASTG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 496
XapI RAATTY 2 cut(s) 114, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.