RchiOBHm_Chr5g0001271

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000236
Physical Location & Seq
Reverse (-)
684704 .. 685599
896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28272

Sequence Viewer

Length: 654 bp
ATGAGTCAAGAGAACCTTGTTCAGTTACTGGACGTTTACAACGTAAAAGGCCTGTATTTGCTCATCTATGAATGTATGCAAAACGACTCCCTTGCACATGCCTTATTTGCTAGGTTTAACATTTGTTTGGGAATAGCTAGGGGATTGGTGTTTCTGCATGAGCATTCCAAGCTGAAGATGGTTCACAGTGACATTAAATCCGCTAATATTCTTCTCGATGGAAAGCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAGCCTTTACACCGAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGACAGAGGGATATGTGGCACCTGAGTATGTTCGAGGAGTTGTGACATCTAAAGCTGATGTTTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTCGAAGGAAAAATGAAGGACACAAGCGAGATAGCCAGGAAACTAAATTTCATTTAGACACGGTAAGCAAAATTGTCATCGCCATGCTTTTCTGCCTTCTTTTTGTTTTTCCAAACTATGCTGCAATGTCATTTAACACAACTTCTATGTTGTGTGTGGAAATGCAGGCTTGTGATTTACTGCAAAAAAGAAAGCTGGTGAACTTGGTTGATAAAACCTTGTCTAACAAATATGATCAAAACAAGCCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.65

Weight (kDa)

8.19

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 165 2.2e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 148 1.7e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AciI CCGC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 286, 392
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 5 cut(s) 137, 172, 226, 359, 595
AluI AGCT 5 cut(s) 137, 172, 226, 359, 595
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 610
BanI GGYRCC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 172, 212
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 437
BclI TGATCA 2 cut(s) 277, 634
BfaI CTAG 2 cut(s) 111, 138
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 508
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 277, 634
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 1 cut(s) 33
BssMI GATC 2 cut(s) 277, 634
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 188, 371, 397, 463
BstC8I GCNNGC 2 cut(s) 259, 567
BstDEI CTNAG 1 cut(s) 327
BstKTI GATC 2 cut(s) 280, 637
BstMBI GATC 2 cut(s) 277, 634
BstMWI GCNNNNNNNGC 2 cut(s) 107, 169
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 259, 567
CaiI CAGNNNCTG 1 cut(s) 28
CviAII CATG 3 cut(s) 98, 158, 484
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 279, 636
DpnII GATC 2 cut(s) 277, 634
Eco147I AGGCCT 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 101, 161, 487
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 3 cut(s) 97, 157, 483
FbaI TGATCA 2 cut(s) 277, 634
Fnu4HI GCNGC 1 cut(s) 522
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 2 cut(s) 111, 138
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 3 cut(s) 101, 161, 487
HinfI GANTC 2 cut(s) 4, 86
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 4 cut(s) 37, 184, 367, 601
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 8, 215
Hpy8I GTNNAC 4 cut(s) 37, 184, 367, 601
HpyAV CCTTC 3 cut(s) 399, 410, 506
HpyCH4III ACNGT 4 cut(s) 188, 371, 397, 463
HpyCH4IV ACGT 2 cut(s) 33, 42
HpyCH4V TGCA 6 cut(s) 79, 95, 157, 524, 565, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 169
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 33, 42
Hsp92II CATG 3 cut(s) 101, 161, 487
Ksp22I TGATCA 2 cut(s) 277, 634
Kzo9I GATC 2 cut(s) 277, 634
LpnPI CCDG 7 cut(s) 14, 65, 339, 422, 449, 551, 581
Lsp1109I GCAGC 1 cut(s) 508
MaeI CTAG 2 cut(s) 111, 138
MaeII ACGT 2 cut(s) 33, 42
MaeIII GTNAC 4 cut(s) 24, 188, 304, 346
MalI GATC 2 cut(s) 279, 636
MboI GATC 2 cut(s) 277, 634
MboII GAAGA 3 cut(s) 187, 203, 284
MluCI AATT 3 cut(s) 281, 446, 471
MlyI GAGTC 2 cut(s) 13, 80
MnlI CCTC 2 cut(s) 304, 332
MseI TTAA 3 cut(s) 117, 195, 534
MslI CAYNNNNRTG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 107, 169
NdeII GATC 2 cut(s) 277, 634
NlaIII CATG 3 cut(s) 101, 161, 487
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 3 cut(s) 188, 304, 346
NspI RCATGY 1 cut(s) 101
PceI AGGCCT 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 12, 80
PpsI GAGTC 2 cut(s) 12, 80
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 117, 195, 534
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 2 cut(s) 277, 634
SchI GAGTC 2 cut(s) 13, 80
ScrFI CCNGG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 281, 446, 471
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 1 cut(s) 201
SspI AATATT 1 cut(s) 208
SspMI CTAG 2 cut(s) 111, 138
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 4 cut(s) 188, 371, 397, 463
TaiI ACGT 2 cut(s) 36, 45
TaqI TCGA 3 cut(s) 216, 337, 403
TasI AATT 3 cut(s) 281, 446, 471
Tru1I TTAA 3 cut(s) 117, 195, 534
Tru9I TTAA 3 cut(s) 117, 195, 534
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 3 cut(s) 188, 304, 346
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 3 cut(s) 188, 304, 346
TspDTI ATGAA 4 cut(s) 84, 280, 429, 440
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 2 cut(s) 111, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.