Rroxscaffold_5G00353810

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000236
Physical Location & Seq
Forward (+)
31763962 .. 31769492
5531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353810.1

Sequence Viewer

Length: 750 bp
ATGTCAAGGCGGTCCAGGGAGACAGACCGGATCGATCTGTCTTTTGCTGAAGAAGAAGCCGAACCGAGGTCCTTTTCCAATAATATGCTTACTGGGGAAGTTCCTAATTGGATTCAAAATGCAGTTTGGAGTAAGATGTATGAAGAAAAGAATCGCTTGGTTATCAGTCCTTACTTTGATGTTGGTGTCAAGGAGGTTGAAGGCTGGACTGCTAGACTTCTTCTGTCAAGACAGGATTGCACTTATAATGATACATCGCAGTTTTACCTGAGTCCAAAAGGAAACTGGGCTCGGAGTAGTGCTGGAAGCACCGTCGACCAAAACTATGCTTCCAATTCTAGTATATTCTTAAAAAGCGTGAGATGTGGGCTTTCCTCTGAAGCACATTTATACGATAGAGCTCGCACTTCTCCTGTCTCTCTAAAATATTACGGATTCTGTTTACGTGGAGGAAAATACAGTGTGACACTTCACTTTGCTGAAATCATTGATGAGGATAATGATCACAGAAGTACAAGTAAACGCGTATTTGATATATACATTCAGGGTGAGAGGAAACTAAAGGATTTCAACATTATGGACAAGGCAGGAGGTCCGAATAACGTATATCAAGAAAATTTCACGGCTGTTAATGTAAATGATAGTCGTACATTAGAGATCCACTTCTACTCGGCTGGAGAAGGGCTTGATAAGGGACCTCTCATATCTGCTATATCCGTAACTCCAGGTCAATACATACTAATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

28.28

Weight (kDa)

5.88

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 118 - 238 1e-25 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 10
AclWI GGATC 2 cut(s) 38, 652
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 2 cut(s) 69, 399
AfaI GTAC 2 cut(s) 514, 649
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 116, 200, 571
AjnI CCWGG 2 cut(s) 14, 724
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 2 cut(s) 14, 421
AlwI GGATC 2 cut(s) 38, 652
ApoI RAATTY 1 cut(s) 616
AseI ATTAAT 1 cut(s) 744
AspS9I GGNCC 4 cut(s) 12, 69, 593, 695
AsuHPI GGTGA 1 cut(s) 560
AvaII GGWCC 4 cut(s) 12, 69, 593, 695
BanII GRGCYC 2 cut(s) 292, 403
Bbv12I GWGCWC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 2 cut(s) 16, 726
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 14, 421
BfaI CTAG 2 cut(s) 213, 339
Bme1390I CCNGG 2 cut(s) 16, 726
Bme18I GGWCC 4 cut(s) 12, 69, 593, 695
BmgT120I GGNCC 4 cut(s) 12, 69, 593, 695
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 16, 726
BmrI ACTGGG 2 cut(s) 102, 295
BmuI ACTGGG 2 cut(s) 102, 295
BpmI CTGGAG 2 cut(s) 696, 708
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 15, 65
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 97, 290
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 2 cut(s) 16, 726
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 15, 65
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 97, 290
Bsh1236I CGCG 1 cut(s) 525
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 14, 421
BsmFI GGGAC 1 cut(s) 708
Bsp1286I GDGCHC 2 cut(s) 292, 403
Bsp143I GATC 4 cut(s) 30, 34, 502, 657
BspACI CCGC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 261
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 696
BspPI GGATC 2 cut(s) 38, 652
BsrI ACTGG 2 cut(s) 97, 290
BssECI CCNNGG 2 cut(s) 15, 65
BssMI GATC 4 cut(s) 30, 34, 502, 657
Bst2UI CCWGG 2 cut(s) 16, 726
Bst4CI ACNGT 2 cut(s) 313, 461
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 525
BstKTI GATC 4 cut(s) 33, 37, 505, 660
BstMAI GTCTC 2 cut(s) 14, 421
BstMBI GATC 4 cut(s) 30, 34, 502, 657
BstNI CCWGG 2 cut(s) 16, 726
BstSCI CCNGG 2 cut(s) 14, 724
BstUI CGCG 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 4 cut(s) 12, 69, 593, 695
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 2 cut(s) 513, 648
CviJI RGCY 8 cut(s) 59, 204, 290, 370, 401, 626, 674, 685
CviKI_1 RGCY 8 cut(s) 59, 204, 290, 370, 401, 626, 674, 685
CviQI GTAC 2 cut(s) 513, 648
DdeI CTNAG 1 cut(s) 269
DpnI GATC 4 cut(s) 32, 36, 504, 659
DpnII GATC 4 cut(s) 30, 34, 502, 657
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 292, 403
Eco47I GGWCC 4 cut(s) 12, 69, 593, 695
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 69, 399
EcoICRI GAGCTC 1 cut(s) 401
EcoO109I RGGNCCY 2 cut(s) 69, 695
EcoRII CCWGG 2 cut(s) 14, 724
EcoT38I GRGCYC 2 cut(s) 292, 403
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 708
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 315
FriOI GRGCYC 2 cut(s) 292, 403
FspBI CTAG 2 cut(s) 213, 339
GsuI CTGGAG 2 cut(s) 696, 708
HapII CCGG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 112, 151, 271, 435
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 3 cut(s) 316, 443, 521
Hpy188I TCNGA 3 cut(s) 294, 379, 597
Hpy188III TCNNGA 2 cut(s) 228, 611
Hpy8I GTNNAC 3 cut(s) 316, 443, 521
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 194, 674
HpyCH4III ACNGT 2 cut(s) 313, 461
HpyCH4IV ACGT 2 cut(s) 445, 603
HpyCH4V TGCA 2 cut(s) 122, 240
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 2 cut(s) 445, 603
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 4 cut(s) 30, 34, 502, 657
MaeI CTAG 2 cut(s) 213, 339
MaeII ACGT 2 cut(s) 445, 603
MaeIII GTNAC 2 cut(s) 463, 718
MalI GATC 4 cut(s) 32, 36, 504, 659
MboI GATC 4 cut(s) 30, 34, 502, 657
MboII GAAGA 4 cut(s) 62, 65, 155, 212
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 292, 403
MluCI AATT 5 cut(s) 106, 334, 616, 741, 745
MluI ACGCGT 1 cut(s) 523
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 8 cut(s) 60, 187, 385, 443, 487, 546, 584, 708
MseI TTAA 4 cut(s) 350, 630, 744, 748
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 2 cut(s) 16, 726
MvaI CCWGG 2 cut(s) 16, 726
MvnI CGCG 1 cut(s) 525
NdeII GATC 4 cut(s) 30, 34, 502, 657
NlaIV GGNNCC 1 cut(s) 696
NmeAIII GCCGAG 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 463
PacI TTAATTAA 1 cut(s) 748
PfeI GAWTC 3 cut(s) 112, 151, 435
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Ppu21I YACGTR 1 cut(s) 446
PpuMI RGGWCCY 2 cut(s) 69, 695
PshBI ATTAAT 1 cut(s) 744
PsiI TTATAA 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 403
Psp5II RGGWCCY 2 cut(s) 69, 695
Psp6I CCWGG 2 cut(s) 14, 724
PspGI CCWGG 2 cut(s) 14, 724
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 4 cut(s) 12, 69, 593, 695
PspPPI RGGWCCY 2 cut(s) 69, 695
PsuI RGATCY 1 cut(s) 657
RsaI GTAC 2 cut(s) 514, 649
RsaNI GTAC 2 cut(s) 513, 648
SacI GAGCTC 1 cut(s) 403
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 4 cut(s) 350, 630, 744, 748
Sau3AI GATC 4 cut(s) 30, 34, 502, 657
Sau96I GGNCC 4 cut(s) 12, 69, 593, 695
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 16, 726
SduI GDGCHC 2 cut(s) 292, 403
SetI ASST 9 cut(s) 71, 198, 270, 403, 448, 595, 606, 700, 730
SinI GGWCC 4 cut(s) 12, 69, 593, 695
Sse9I AATT 5 cut(s) 106, 334, 616, 741, 745
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 428
SspMI CTAG 2 cut(s) 213, 339
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 2 cut(s) 14, 724
TaaI ACNGT 2 cut(s) 313, 461
TaiI ACGT 2 cut(s) 448, 606
TaqI TCGA 2 cut(s) 33, 315
TasI AATT 5 cut(s) 106, 334, 616, 741, 745
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 3 cut(s) 112, 151, 435
Tru1I TTAA 4 cut(s) 350, 630, 744, 748
Tru9I TTAA 4 cut(s) 350, 630, 744, 748
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 447, 706
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 4 cut(s) 12, 69, 593, 695
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 213, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.