Rmu_co8113804.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8113804.1
OG0000236
Physical Location & Seq
Reverse (-)
2 .. 515
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8113804.1_g000001.1.cds

Sequence Viewer

Length: 296 bp
atgcctgagggatatatggcacctgagtatgttcgaggagttgtgacatccaaagctgatgtctacagttttggggtggttatacttgaaactgttagtggaaggaaaaatgcaggacacaagcgagatagccaggaaactgaatttcttttagacacggcttgtgatttacagcgaaaaggaaagctggtggacttggttgataaaaccttgtctaataagtatgatgcaaaacaagccatcatcatcttgaatttagcagtaaagtgcatcaatatatcgccaactctgaggcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

10.96

Weight (kDa)

8.58

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 143, 253
AgsI TTSAA 2 cut(s) 89, 253
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 56, 187
AluI AGCT 2 cut(s) 56, 187
ApoI RAATTY 2 cut(s) 143, 253
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AxyI CCTNAGG 1 cut(s) 6
BanI GGYRCC 1 cut(s) 19
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 217, 279
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 15, 281
BseRI GAGGAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 19
BsnI GGCC 1 cut(s) 295
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 16, 282
BspLI GGNNCC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 68, 94
BstDEI CTNAG 3 cut(s) 6, 24, 290
BstF5I GGATG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 47
CviJI RGCY 6 cut(s) 56, 132, 161, 187, 239, 295
CviKI_1 RGCY 6 cut(s) 56, 132, 161, 187, 239, 295
DdeI CTNAG 3 cut(s) 6, 24, 290
Eco81I CCTNAGG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 132
FaiI YATR 6 cut(s) 15, 17, 30, 83, 225, 278
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 64, 193
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 2 cut(s) 64, 193
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 68, 94
HpyCH4V TGCA 3 cut(s) 113, 230, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 6, 24, 290
LpnPI CCDG 6 cut(s) 18, 36, 99, 119, 146, 173
LweI GCATC 2 cut(s) 217, 279
MaeIII GTNAC 1 cut(s) 43
MluCI AATT 2 cut(s) 143, 253
MnlI CCTC 2 cut(s) 29, 285
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 134
SetI ASST 4 cut(s) 25, 58, 189, 212
SfaNI GCATC 2 cut(s) 217, 279
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 2 cut(s) 143, 253
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 68, 94
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 143, 253
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
XapI RAATTY 2 cut(s) 143, 253
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.