Rroxscaffold_1G00040260

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000236
Physical Location & Seq
Forward (+)
57881348 .. 57902647
21300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040260.1

Sequence Viewer

Length: 1062 bp
ATGAGTCAAGAGAACCTTGTTCAGTTACTGGACGTTTACAATGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAAATCCCTTGCACACGCTTTATTTGACTCAAAGTCCAAATTGAAACTTGATTGGGAAGCTAGGTTTAACATTTGCTTGGGAATAGCTAGGGGATTGGCGTATCTACATGAGCATCCCAGGCTGAAGACGGTTCACAGGGACATTAAATCAGCTAATATTCTTCTCGATGGAAACCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAGCCTTTACACCGAAGATGATCAATTCAAGTTCGTCAAAGTAGAAGTGACAGAGGGATATATGGCACCCGAGTATGTTCGAGGAGTTGTGACATCTAAAGCTGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGAAAAATGCAGGACACAAGCGAGATAGCCAGGAAACTGAATTTCTTTTAGACACGGCTTGTGATTTACAGCGAAAAGGAAAGTTGGTGGACTTGGTTGATAAAACCTTGTCTAACAAGTATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAAAGTGCATCAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATCTGTTCCTCTGATCAGATTGAGGACATTAACGACCCCCATGTGAAGGAGATCGCAGAGTTCGCAGTGTCGGAGTACAACAAGAAATCTGGGAAGAAGCTGGAGTTACAGAGCGTGGTGAAGGGCGAGACTCGGGTCGTCCCCGGGGAGAATTACCGGCTCGTCATCGCCGTCAAGGATAATTCGGCTGCGGCTAAGTACGAGGGCGTTGTGTATGAGAGGATTTGGGAGCACACTAGGGAATTGCTCTCCTTCGATAGTCACATTGCACAAGTTGATTCCTCTGTTTCTATGGAAGTAACCTCGAGAGCATCCACACCATCCAATTTGATCAAAGGGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

39.55

Weight (kDa)

5.76

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 217 2.6e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 219 8.1e-32 Protein tyrosine and serine/threonine kinase
SQAPI PF16845 235 - 314 1.4e-30 Aspartic acid proteinase inhibitor
Cystatin PF00031 235 - 292 2.6e-12 Cystatin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 399
AciI CCGC 1 cut(s) 875
AcsI RAATTY 2 cut(s) 479, 589
AcuI CTGAAG 2 cut(s) 227, 663
AfaI GTAC 3 cut(s) 761, 884, 1054
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 4 cut(s) 127, 319, 425, 589
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 2 cut(s) 200, 468
AluBI AGCT 5 cut(s) 143, 170, 236, 392, 784
AluI AGCT 5 cut(s) 143, 170, 236, 392, 784
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 4 cut(s) 359, 816, 827, 988
AoxI GGCC 2 cut(s) 49, 629
ApeKI GCWGC 1 cut(s) 872
ApoI RAATTY 2 cut(s) 479, 589
AsuC2I CCSGG 2 cut(s) 828, 829
AsuHPI GGTGA 1 cut(s) 814
AvaI CYCGRG 4 cut(s) 359, 816, 827, 988
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 1 cut(s) 859
BccI CCATC 3 cut(s) 245, 584, 1012
BceAI ACGGC 2 cut(s) 510, 839
BciT130I CCWGG 2 cut(s) 202, 470
BclI TGATCA 3 cut(s) 310, 697, 1014
BcnI CCSGG 2 cut(s) 828, 829
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 4 cut(s) 144, 171, 921, 1060
BfmI CTRYAG 1 cut(s) 400
BglII AGATCT 1 cut(s) 684
BisI GCNGC 2 cut(s) 873, 876
BlsI GCNGC 2 cut(s) 874, 877
Bme1390I CCNGG 4 cut(s) 202, 470, 828, 829
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 4 cut(s) 359, 816, 827, 988
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 4 cut(s) 202, 470, 828, 829
BmsI GCATC 4 cut(s) 205, 553, 615, 1004
BoxI GACNNNNGTC 1 cut(s) 818
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 806
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 828, 829
BsaJI CCNNGG 4 cut(s) 200, 826, 827, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse118I RCCGGY 1 cut(s) 840
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 2 cut(s) 202, 470
BseDI CCNNGG 4 cut(s) 200, 826, 827, 828
BseGI GGATG 3 cut(s) 196, 995, 1004
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 2 cut(s) 617, 1038
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 387, 695
BseXI GCAGC 1 cut(s) 859
BshFI GGCC 2 cut(s) 51, 631
BshNI GGYRCC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 4 cut(s) 359, 816, 827, 988
BsiSI CCGG 2 cut(s) 828, 841
BslFI GGGAC 2 cut(s) 236, 809
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 2 cut(s) 236, 809
BsnI GGCC 2 cut(s) 51, 631
BsoBI CYCGRG 4 cut(s) 359, 816, 827, 988
Bsp1286I GDGCHC 1 cut(s) 918
Bsp143I GATC 5 cut(s) 310, 684, 697, 735, 1014
BspACI CCGC 1 cut(s) 875
BspANI GGCC 2 cut(s) 51, 631
BspCNI CTCAG 2 cut(s) 618, 1039
BspLI GGNNCC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 840
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 840
BssECI CCNNGG 4 cut(s) 200, 826, 827, 828
BssMI GATC 5 cut(s) 310, 684, 697, 735, 1014
Bst2UI CCWGG 2 cut(s) 202, 470
Bst4CI ACNGT 3 cut(s) 214, 404, 430
BstC8I GCNNGC 2 cut(s) 53, 292
BstDEI CTNAG 3 cut(s) 626, 879, 1047
BstF5I GGATG 3 cut(s) 196, 995, 1004
BstKTI GATC 5 cut(s) 313, 687, 700, 738, 1017
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 5 cut(s) 310, 684, 697, 735, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 202, 572, 746
BstNI CCWGG 2 cut(s) 202, 470
BstPAI GACNNNNGTC 1 cut(s) 818
BstSCI CCNGG 4 cut(s) 200, 468, 826, 827
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 859
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 2 cut(s) 51, 631
BtgZI GCGATG 1 cut(s) 835
BtsCI GGATG 3 cut(s) 196, 995, 1004
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 2 cut(s) 53, 292
CaiI CAGNNNCTG 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 840
Cfr9I CCCGGG 1 cut(s) 827
Csp6I GTAC 3 cut(s) 760, 883, 1053
CviAII CATG 2 cut(s) 191, 725
CviQI GTAC 3 cut(s) 760, 883, 1053
DdeI CTNAG 3 cut(s) 626, 879, 1047
DpnI GATC 5 cut(s) 312, 686, 699, 737, 1016
DpnII GATC 5 cut(s) 310, 684, 697, 735, 1014
DriI GACNNNNNGTC 1 cut(s) 115
Eam1105I GACNNNNNGTC 1 cut(s) 115
Eco147I AGGCCT 2 cut(s) 51, 631
Eco57I CTGAAG 2 cut(s) 227, 663
Eco88I CYCGRG 4 cut(s) 359, 816, 827, 988
EcoRII CCWGG 2 cut(s) 200, 468
FaeI CATG 2 cut(s) 194, 728
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 236, 809
FatI CATG 2 cut(s) 190, 724
FbaI TGATCA 3 cut(s) 310, 697, 1014
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 873, 876
FokI GGATG 3 cut(s) 183, 982, 991
Fsp4HI GCNGC 2 cut(s) 873, 876
FspBI CTAG 4 cut(s) 144, 171, 921, 1060
GluI GCNGC 2 cut(s) 873, 876
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 2 cut(s) 51, 631
HapII CCGG 2 cut(s) 828, 841
Hin1II CATG 2 cut(s) 194, 728
HinfI GANTC 4 cut(s) 4, 110, 814, 962
HpaII CCGG 2 cut(s) 828, 841
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 4 cut(s) 37, 217, 400, 529
Hpy188I TCNGA 7 cut(s) 277, 627, 643, 697, 702, 757, 1048
Hpy188III TCNNGA 4 cut(s) 8, 248, 586, 990
Hpy8I GTNNAC 4 cut(s) 37, 217, 400, 529
HpyAV CCTTC 4 cut(s) 432, 724, 799, 946
HpyCH4III ACNGT 3 cut(s) 214, 404, 430
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 8 cut(s) 44, 55, 79, 95, 449, 566, 606, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 572, 746
HpyF3I CTNAG 3 cut(s) 626, 879, 1047
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 194, 728
Ksp22I TGATCA 3 cut(s) 310, 697, 1014
Kzo9I GATC 5 cut(s) 310, 684, 697, 735, 1014
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 1 cut(s) 859
LweI GCATC 4 cut(s) 205, 553, 615, 1004
MaeI CTAG 4 cut(s) 144, 171, 921, 1060
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 6 cut(s) 24, 337, 379, 789, 944, 982
MalI GATC 5 cut(s) 312, 686, 699, 737, 1016
MboI GATC 5 cut(s) 310, 684, 697, 735, 1014
MboII GAAGA 5 cut(s) 220, 236, 317, 790, 1037
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 918
MluCI AATT 9 cut(s) 122, 314, 479, 589, 675, 835, 865, 926, 1009
MlyI GAGTC 3 cut(s) 13, 104, 808
MmeI TCCRAC 1 cut(s) 735
MseI TTAA 3 cut(s) 150, 228, 714
MspI CCGG 2 cut(s) 828, 841
MspR9I CCNGG 4 cut(s) 202, 470, 828, 829
MvaI CCWGG 2 cut(s) 202, 470
MwoI GCNNNNNNNGC 3 cut(s) 202, 572, 746
NciI CCSGG 2 cut(s) 828, 829
NdeII GATC 5 cut(s) 310, 684, 697, 735, 1014
NlaIII CATG 2 cut(s) 194, 728
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 3 cut(s) 337, 379, 944
PaeR7I CTCGAG 1 cut(s) 988
PceI AGGCCT 2 cut(s) 51, 631
PcsI WCGNNNNNNNCGW 1 cut(s) 852
PfeI GAWTC 1 cut(s) 962
PkrI GCNGC 2 cut(s) 874, 877
PleI GAGTC 3 cut(s) 12, 104, 808
PpsI GAGTC 3 cut(s) 12, 104, 808
PshAI GACNNNNGTC 1 cut(s) 818
Psp6I CCWGG 2 cut(s) 200, 468
PspGI CCWGG 2 cut(s) 200, 468
PspN4I GGNNCC 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 684
RsaI GTAC 3 cut(s) 761, 884, 1054
RsaNI GTAC 3 cut(s) 760, 883, 1053
SaqAI TTAA 3 cut(s) 150, 228, 714
SatI GCNGC 2 cut(s) 873, 876
Sau3AI GATC 5 cut(s) 310, 684, 697, 735, 1014
SchI GAGTC 3 cut(s) 13, 104, 808
ScrFI CCNGG 4 cut(s) 202, 470, 828, 829
SduI GDGCHC 1 cut(s) 918
SfaNI GCATC 4 cut(s) 205, 553, 615, 1004
SfcI CTRYAG 1 cut(s) 400
Sfr274I CTCGAG 1 cut(s) 988
SlaI CTCGAG 1 cut(s) 988
SmaI CCCGGG 1 cut(s) 829
SmlI CTYRAG 2 cut(s) 260, 988
SmoI CTYRAG 2 cut(s) 260, 988
Sse9I AATT 9 cut(s) 122, 314, 479, 589, 675, 835, 865, 926, 1009
SseBI AGGCCT 2 cut(s) 51, 631
SsiI CCGC 1 cut(s) 875
SspI AATATT 1 cut(s) 241
SspMI CTAG 4 cut(s) 144, 171, 921, 1060
StuI AGGCCT 2 cut(s) 51, 631
StyD4I CCNGG 4 cut(s) 200, 468, 826, 827
TaaI ACNGT 3 cut(s) 214, 404, 430
TaiI ACGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 249, 370, 939, 989
TasI AATT 9 cut(s) 122, 314, 479, 589, 675, 835, 865, 926, 1009
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 1 cut(s) 962
Tru1I TTAA 3 cut(s) 150, 228, 714
Tru9I TTAA 3 cut(s) 150, 228, 714
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 3 cut(s) 337, 379, 944
TseI GCWGC 1 cut(s) 872
Tsp45I GTSAC 3 cut(s) 337, 379, 944
TspDTI ATGAA 2 cut(s) 84, 1044
TspMI CCCGGG 1 cut(s) 827
TspRI CASTG 1 cut(s) 756
XapI RAATTY 2 cut(s) 479, 589
XhoI CTCGAG 1 cut(s) 988
XmaI CCCGGG 1 cut(s) 827
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 4 cut(s) 144, 171, 921, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.