Rh5AG008600

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000236
Physical Location & Seq
Reverse (-)
577944 .. 578661
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG008600.1

Sequence Viewer

Length: 522 bp
ATGCTTACAGATATTATGTATTGTTGCTGCAGAGGATATACGGCACCAGAGTATTTTCAAGGAAATTTGACGATTAAAGCTGATGTTTACAGCTTTGGGGTGATCCTACTTGAAATTGTTTCTTGGAAAAAAAATGTGATCAAATCACACAATGGAACTGAGGTTCTTGTGGACACGGCTAATGAAAAACATGAACAAGGAAATCTCGAGGACATGATTGATAAGAATTTGGAAACTTGCGATACACAACAAGCCCTGACAGTCTTGAAATTAGCAGTGAAGTGCACCAGTATAGCCCCTAGTGTGAGGCCTTCAATGTCTGACGTTGTGAGTGTTCTGCTAAATAAAAAGACGATTGGTGAGCTTTTTAGATCTGCTGCCCCTAATGTTGGGGAAAAGATCAAGGGCAGTGGGGGCGCCACTTCTATGGACCTTACCTCTATACCATCAACTTCATCTCCTTCTACCAACACCAAAGATGAATGGGAAAGTATTTCTGCGGATATTCCTATGAAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

5.21

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 7 - 110 3.7e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 13 - 112 2.6e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 416
AciI CCGC 1 cut(s) 500
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 2 cut(s) 64, 226
AcyI GRCGYC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 4 cut(s) 59, 113, 268, 315
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 80, 93, 364
AluI AGCT 3 cut(s) 80, 93, 364
Alw21I GWGCWC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 308
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 27, 377
ApoI RAATTY 2 cut(s) 64, 226
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 112, 371
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 43, 416
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 14, 364
BccI CCATC 1 cut(s) 454
BceAI ACGGC 2 cut(s) 57, 192
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 420
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 28, 378
BlsI GCNGC 2 cut(s) 29, 379
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 45, 418
BsaHI GRCGYC 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 2 cut(s) 14, 364
BshFI GGCC 1 cut(s) 310
BshNI GGYRCC 2 cut(s) 43, 416
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 389
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 102, 138, 371, 399
BspACI CCGC 1 cut(s) 500
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 45, 418
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 2 cut(s) 43, 416
BsrI ACTGG 1 cut(s) 288
BssMI GATC 4 cut(s) 102, 138, 371, 399
BssNI GRCGYC 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 4 cut(s) 105, 141, 374, 402
BstMBI GATC 4 cut(s) 102, 138, 371, 399
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 14, 364
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 1 cut(s) 310
BtsI GCAGTG 2 cut(s) 282, 415
BtsIMutI CAGTG 2 cut(s) 282, 415
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 2 cut(s) 191, 214
CviJI RGCY 7 cut(s) 80, 93, 179, 254, 296, 310, 364
CviKI_1 RGCY 7 cut(s) 80, 93, 179, 254, 296, 310, 364
DdeI CTNAG 1 cut(s) 159
DinI GGCGCC 1 cut(s) 418
DpnI GATC 4 cut(s) 104, 140, 373, 401
DpnII GATC 4 cut(s) 102, 138, 371, 399
Eco147I AGGCCT 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 206
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
FaeI CATG 2 cut(s) 194, 217
FaiI YATR 8 cut(s) 17, 39, 192, 215, 293, 428, 443, 512
FatI CATG 2 cut(s) 190, 213
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 28, 378
Fsp4HI GCNGC 2 cut(s) 28, 378
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 418
GluI GCNGC 2 cut(s) 28, 378
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 1 cut(s) 310
HhaI GCGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 2 cut(s) 194, 217
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HphI GGTGA 2 cut(s) 112, 371
Hpy166II GTNNAC 3 cut(s) 88, 172, 285
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 206, 265, 519
Hpy8I GTNNAC 3 cut(s) 88, 172, 285
HpyAV CCTTC 2 cut(s) 321, 471
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 30, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 2 cut(s) 194, 217
HspAI GCGC 1 cut(s) 417
KasI GGCGCC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 102, 138, 371, 399
LpnPI CCDG 3 cut(s) 60, 269, 301
Lsp1109I GCAGC 2 cut(s) 14, 364
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 324
MalI GATC 4 cut(s) 104, 140, 373, 401
MboI GATC 4 cut(s) 102, 138, 371, 399
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 4 cut(s) 64, 114, 226, 269
Mly113I GGCGCC 1 cut(s) 417
MnlI CCTC 5 cut(s) 26, 154, 202, 300, 448
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 414
NarI GGCGCC 1 cut(s) 417
NdeII GATC 4 cut(s) 102, 138, 371, 399
NlaIII CATG 2 cut(s) 194, 217
NlaIV GGNNCC 2 cut(s) 45, 418
PaeR7I CTCGAG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 310
PkrI GCNGC 2 cut(s) 29, 379
PluTI GGCGCC 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 45, 418
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 28, 378
Sau3AI GATC 4 cut(s) 102, 138, 371, 399
Sau96I GGNCC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 287
SetI ASST 7 cut(s) 82, 95, 165, 327, 366, 435, 440
SfcI CTRYAG 1 cut(s) 28
SfoI GGCGCC 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 64, 114, 226, 269
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 500
SspDI GGCGCC 1 cut(s) 416
SspMI CTAG 1 cut(s) 300
StuI AGGCCT 1 cut(s) 310
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 64, 114, 226, 269
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 282, 415
TseI GCWGC 2 cut(s) 27, 377
TspDTI ATGAA 4 cut(s) 198, 207, 444, 495
TspRI CASTG 2 cut(s) 282, 415
VneI GTGCAC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 64, 226
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.