Rroxscaffold_1G00040220

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
57806420 .. 57817710
11291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040220.1

Sequence Viewer

Length: 1125 bp
ATGGGTACTGAGGGTAAATTTATAATTCTCTGCCTCATCTTTACTCTTTGGCAGCTTGGTTCTGAATTCAAAAATCGAAGTATAGCTCAAACGTTGCCCGATGAAGAAGTGAGAGCTTTTAAGCAAGTAGCAAAAAAGTTGGGGTTAAACCTTGGATATCCTGGAGTGTTCTTAGATGGCTCATTCTGCAACCAGAGCTTATTTCTTGGCATCGGCTGTAACTGCACTTTTCAAAACGACACCATCTGCCATATCAGAAAAATTGAACTGAGTGCTAGCGGTTTGACTGGAGTTATACCTGATGAACTGGCCAATCTCACACATCTAGAGAGCCTGGATCTCAGTATGAATCAATTGACTGGTTCCATACCTGCTAGCTTGGGGAATTTATCTTGGCTCAATGACCTGGATCTTTCAAGCAATCATTTGAGTGGATTCATACCCGTTACTTTAGGGAAGTTGGCTGTCCCATCTTATCTGTACGACAACTTTCTCAGCGGCTCTATACCAGCATCTTTGGGTGCATTGTCTCATCTCTGGACACTGGACTTGCATAACAATGGAATCTTTGGTACTCTCCCACAGACACTTGGAAATTTGACATACCTTGAACGCTTCACGGTCGGATCCAACAGTATCACCGGGACATTACCAGAAAGTTTTGCTAGCCTTCAATCGCTGACGAAATTTTCTGTAGCTGGTAACTATTTGTCTGGCCCTTTACCTGACTTCATAGCCAACTGGACTGAAATCGAAGAACTTTATCTCAACGGAAATAATTTCCACGGAAGGATACCTGCCGGAATTTTTAATATATCAGACTTGAGCTTCAACAACTTAACGGGTAGAATCCCAGATGCTTTGAAAAACTTAAATTTAAGTTACATATCTTTTTCAAACAATATGCTTTCTGGGGAAATTCCTGATTGGATTCAAAATGCAAACTGGAGTAAGATGAATTTGTTTTCCTGCTGCTGCAACTTCTCAACCTGTCTGCCAAATACGTATGACCATATCTTGTCTGTTGTACTGTTAGAAAAACTTGACGATAAAGTTTTTTATAACTTGTGGCGATTATACTTACAGAACGGACCCAACCACGGAGAAGTATTGTCCAAGGCCTAA

Protein Analysis

374

Amino Acids

41.17

Weight (kDa)

5.11

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 84 - 143 3.3e-08 Leucine rich repeat
LRR_14 PF23598 172 - 256 1.6e-07 Leucine-rich repeat region
LRR_8 PF13855 178 - 237 5.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 23, 1062
Acc36I ACCTGC 2 cut(s) 379, 805
AciI CCGC 2 cut(s) 279, 498
AclI AACGTT 1 cut(s) 92
AclWI GGATC 4 cut(s) 345, 417, 621, 634
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 9 cut(s) 17, 65, 385, 595, 686, 804, 874, 918, 958
AfaI GTAC 4 cut(s) 7, 482, 574, 1029
AfiI CCNNNNNNNGG 1 cut(s) 1100
AjnI CCWGG 3 cut(s) 160, 333, 405
AluBI AGCT 7 cut(s) 55, 86, 116, 198, 378, 698, 828
AluI AGCT 7 cut(s) 55, 86, 116, 198, 378, 698, 828
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 4 cut(s) 345, 417, 621, 634
AoxI GGCC 3 cut(s) 309, 715, 1119
ApeKI GCWGC 3 cut(s) 52, 972, 975
ApoI RAATTY 9 cut(s) 17, 65, 385, 595, 686, 804, 874, 918, 958
AspS9I GGNCC 2 cut(s) 716, 1091
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 1 cut(s) 631
AsuNHI GCTAGC 3 cut(s) 275, 374, 665
AvaII GGWCC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 626
BbvI GCAGC 3 cut(s) 64, 959, 962
BccI CCATC 3 cut(s) 170, 251, 478
BciT130I CCWGG 3 cut(s) 162, 335, 407
BciVI GTATCC 1 cut(s) 786
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 4 cut(s) 276, 326, 375, 666
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 2 cut(s) 379, 805
BfuI GTATCC 1 cut(s) 786
BisI GCNGC 4 cut(s) 53, 499, 973, 976
BlsI GCNGC 4 cut(s) 54, 500, 974, 977
Bme1390I CCNGG 4 cut(s) 162, 335, 407, 643
Bme18I GGWCC 1 cut(s) 1091
BmgT120I GGNCC 2 cut(s) 716, 1091
BmiI GGNNCC 3 cut(s) 364, 628, 1093
BmrFI CCNGG 4 cut(s) 162, 335, 407, 643
BmsI GCATC 3 cut(s) 219, 521, 847
BmtI GCTAGC 3 cut(s) 279, 378, 669
BpmI CTGGAG 3 cut(s) 183, 309, 967
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 643
BsaAI YACGTR 1 cut(s) 1005
BsaJI CCNNGG 4 cut(s) 151, 784, 1099, 1116
Bsc4I CCNNNNNNNGG 1 cut(s) 1100
Bse1I ACTGG 6 cut(s) 292, 312, 364, 549, 746, 950
BseBI CCWGG 3 cut(s) 162, 335, 407
BseDI CCNNGG 4 cut(s) 151, 784, 1099, 1116
BseLI CCNNNNNNNGG 1 cut(s) 1100
BseMII CTCAG 3 cut(s) 260, 355, 508
BseNI ACTGG 6 cut(s) 292, 312, 364, 549, 746, 950
BseXI GCAGC 3 cut(s) 64, 959, 962
BsgI GTGCAG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 3 cut(s) 311, 717, 1121
BsiEI CGRYCG 1 cut(s) 624
BsiSI CCGG 2 cut(s) 642, 801
BslFI GGGAC 2 cut(s) 452, 658
BslI CCNNNNNNNGG 1 cut(s) 1100
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 452, 658
BsnI GGCC 3 cut(s) 311, 717, 1121
Bsp143I GATC 3 cut(s) 337, 409, 626
BspACI CCGC 2 cut(s) 279, 498
BspANI GGCC 3 cut(s) 311, 717, 1121
BspCNI CTCAG 3 cut(s) 261, 354, 507
BspLI GGNNCC 3 cut(s) 364, 628, 1093
BspMI ACCTGC 2 cut(s) 379, 805
BspOI GCTAGC 3 cut(s) 279, 378, 669
BspPI GGATC 4 cut(s) 345, 417, 621, 634
BsrI ACTGG 6 cut(s) 292, 312, 364, 549, 746, 950
BssECI CCNNGG 4 cut(s) 151, 784, 1099, 1116
BssMI GATC 3 cut(s) 337, 409, 626
BssT1I CCWWGG 2 cut(s) 151, 1116
Bst2UI CCWGG 3 cut(s) 162, 335, 407
Bst4CI ACNGT 3 cut(s) 622, 635, 1032
BstBAI YACGTR 1 cut(s) 1005
BstC8I GCNNGC 3 cut(s) 277, 376, 667
BstDEI CTNAG 5 cut(s) 9, 172, 269, 341, 494
BstDSI CCRYGG 2 cut(s) 784, 1099
BstKTI GATC 3 cut(s) 340, 412, 629
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 3 cut(s) 337, 409, 626
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 3 cut(s) 186, 195, 222
BstNI CCWGG 3 cut(s) 162, 335, 407
BstSCI CCNGG 4 cut(s) 160, 333, 405, 641
BstSFI CTRYAG 1 cut(s) 693
BstSNI TACGTA 1 cut(s) 1005
BstV1I GCAGC 3 cut(s) 64, 959, 962
BstX2I RGATCY 3 cut(s) 337, 409, 626
BstYI RGATCY 3 cut(s) 337, 409, 626
BsuI GTATCC 1 cut(s) 786
BsuRI GGCC 3 cut(s) 311, 717, 1121
BtgI CCRYGG 2 cut(s) 784, 1099
BtsIMutI CAGTG 1 cut(s) 542
BveI ACCTGC 2 cut(s) 379, 805
Cac8I GCNNGC 3 cut(s) 277, 376, 667
Cfr13I GGNCC 2 cut(s) 716, 1091
Csp6I GTAC 4 cut(s) 6, 481, 573, 1028
CviQI GTAC 4 cut(s) 6, 481, 573, 1028
DdeI CTNAG 5 cut(s) 9, 172, 269, 341, 494
DpnI GATC 3 cut(s) 339, 411, 628
DpnII GATC 3 cut(s) 337, 409, 626
EaeI YGGCCR 1 cut(s) 309
Eco105I TACGTA 1 cut(s) 1005
Eco130I CCWWGG 2 cut(s) 151, 1116
Eco147I AGGCCT 1 cut(s) 1121
Eco32I GATATC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 1091
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 160, 333, 405
EcoRV GATATC 1 cut(s) 158
EcoT14I CCWWGG 2 cut(s) 151, 1116
ErhI CCWWGG 2 cut(s) 151, 1116
FaqI GGGAC 2 cut(s) 452, 658
Fnu4HI GCNGC 4 cut(s) 53, 499, 973, 976
Fsp4HI GCNGC 4 cut(s) 53, 499, 973, 976
FspBI CTAG 4 cut(s) 276, 326, 375, 666
GluI GCNGC 4 cut(s) 53, 499, 973, 976
GsuI CTGGAG 3 cut(s) 183, 309, 967
HaeIII GGCC 3 cut(s) 311, 717, 1121
HapII CCGG 2 cut(s) 642, 801
HinfI GANTC 5 cut(s) 349, 435, 564, 849, 931
HpaII CCGG 2 cut(s) 642, 801
HphI GGTGA 1 cut(s) 631
Hpy188I TCNGA 4 cut(s) 64, 257, 626, 820
Hpy188III TCNNGA 3 cut(s) 326, 538, 923
HpyAV CCTTC 2 cut(s) 680, 783
HpyCH4III ACNGT 3 cut(s) 622, 635, 1032
HpyCH4IV ACGT 2 cut(s) 92, 1004
HpyCH4V TGCA 6 cut(s) 189, 225, 524, 553, 941, 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 195, 222
HpyF3I CTNAG 5 cut(s) 9, 172, 269, 341, 494
HpySE526I ACGT 2 cut(s) 92, 1004
Kzo9I GATC 3 cut(s) 337, 409, 626
Lsp1109I GCAGC 3 cut(s) 64, 959, 962
LweI GCATC 3 cut(s) 219, 521, 847
MaeI CTAG 4 cut(s) 276, 326, 375, 666
MaeII ACGT 2 cut(s) 92, 1004
MaeIII GTNAC 4 cut(s) 218, 445, 701, 881
MalI GATC 3 cut(s) 339, 411, 628
MboI GATC 3 cut(s) 337, 409, 626
MboII GAAGA 2 cut(s) 116, 767
MfeI CAATTG 1 cut(s) 353
MflI RGATCY 3 cut(s) 337, 409, 626
MlsI TGGCCA 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 604, 654
MnlI CCTC 2 cut(s) 4, 44
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 6 cut(s) 120, 146, 810, 839, 872, 878
MslI CAYNNNNRTG 2 cut(s) 429, 558
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 2 cut(s) 642, 801
MspR9I CCNGG 4 cut(s) 162, 335, 407, 643
MunI CAATTG 1 cut(s) 353
MvaI CCWGG 3 cut(s) 162, 335, 407
MwoI GCNNNNNNNGC 3 cut(s) 186, 195, 222
NciI CCSGG 1 cut(s) 643
NdeII GATC 3 cut(s) 337, 409, 626
NheI GCTAGC 3 cut(s) 275, 374, 665
NlaIV GGNNCC 3 cut(s) 364, 628, 1093
PceI AGGCCT 1 cut(s) 1121
PfeI GAWTC 5 cut(s) 349, 435, 564, 849, 931
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 4 cut(s) 54, 500, 974, 977
Ppu21I YACGTR 1 cut(s) 1005
PsiI TTATAA 2 cut(s) 23, 1062
Psp1406I AACGTT 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 160, 333, 405
PspGI CCWGG 3 cut(s) 160, 333, 405
PspN4I GGNNCC 3 cut(s) 364, 628, 1093
PspPI GGNCC 2 cut(s) 716, 1091
PsuI RGATCY 3 cut(s) 337, 409, 626
RsaI GTAC 4 cut(s) 7, 482, 574, 1029
RsaNI GTAC 4 cut(s) 6, 481, 573, 1028
RseI CAYNNNNRTG 2 cut(s) 429, 558
SaqAI TTAA 6 cut(s) 120, 146, 810, 839, 872, 878
SatI GCNGC 4 cut(s) 53, 499, 973, 976
Sau3AI GATC 3 cut(s) 337, 409, 626
Sau96I GGNCC 2 cut(s) 716, 1091
ScrFI CCNGG 4 cut(s) 162, 335, 407, 643
SfaNI GCATC 3 cut(s) 219, 521, 847
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 2 cut(s) 429, 558
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SnaBI TACGTA 1 cut(s) 1005
SseBI AGGCCT 1 cut(s) 1121
SsiI CCGC 2 cut(s) 279, 498
SspMI CTAG 4 cut(s) 276, 326, 375, 666
StuI AGGCCT 1 cut(s) 1121
StyD4I CCNGG 4 cut(s) 160, 333, 405, 641
StyI CCWWGG 2 cut(s) 151, 1116
TaaI ACNGT 3 cut(s) 622, 635, 1032
TaiI ACGT 2 cut(s) 95, 1007
TaqI TCGA 2 cut(s) 76, 753
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 5 cut(s) 349, 435, 564, 849, 931
Tru1I TTAA 6 cut(s) 120, 146, 810, 839, 872, 878
Tru9I TTAA 6 cut(s) 120, 146, 810, 839, 872, 878
TscAI CASTG 1 cut(s) 549
TseI GCWGC 3 cut(s) 52, 972, 975
TspDTI ATGAA 6 cut(s) 117, 318, 362, 427, 721, 971
TspGWI ACGGA 4 cut(s) 786, 801, 1104, 1116
TspRI CASTG 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 1091
XapI RAATTY 9 cut(s) 17, 65, 385, 595, 686, 804, 874, 918, 958
XbaI TCTAGA 1 cut(s) 325
XspI CTAG 4 cut(s) 276, 326, 375, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.