MD10G1334500.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
41190594 .. 41193804
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1334500.v1.1.491

Sequence Viewer

Length: 792 bp
ATGTATAGATATCTGCAATACAACTTGCTTAGCGGAGATATACCACCAAGTTTTGGTTCACTGGCGAATCTTACTGAATTGAATCTGCAGTTCAATATGCTATCAGGCTCAATTCCTGAGGATTTTGGAGATCTTTCGAGTCTTAAAATTATGGATCTGTCTGAGAATCAGCTCTCTGGTCCTCTTCCAGAAAGCCTCGGAAAGTTGAAAAATCTCACAATCCTCTATGTGTCAGCCAATTATTTGAGTGGGAAATTTCCAGAAACTTATGGAAACCTCACAAGCCTGAAAAAGTTTTCAATAGCCGGGAATTACATTTCTGGTCCCTTACCAGTTGAAACCATAGCCAAGTGGACTAATATCACTCACCTGGTGCTCGTGGGAAACAATTTCGAAGGAAACTTGACTGAAAAAATATTCGGCTTGCAAAACCTTCAGCATCTGTTGATAAGTGACCTGGCAAATAATAGTTTCCAATTACCACTAAAAATCGCCAACAGTACCAATTTCATTTCTCTAACACTGAGGAACTGCTCAATCACCGGCCCAATCCCCAAATACATTGGTGAAGAAATGACATCTCTAAGATACCTAGACTTGAGCTTCAATAAGTTAACTGGTGGCCTCCCTCAGACTATGAGTTCAAATATGATTGACATGTCTTTTTCTGGAAATATGCTTGACGGGACAATCCCACCTTGGATACATGGGTCCTTCCAAACTAGGATAGATCTTTCGTTCAACAATTTTTCAGCAGGAGGCTCTCTAGTACTAAGCAACCCACAACTGTGA

Protein Analysis

264

Amino Acids

28.89

Weight (kDa)

5.34

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 4 - 58 1.3e-07 Leucine rich repeat
LRR_14 PF23598 19 - 205 1.8e-15 Leucine-rich repeat region
LRR_8 PF13855 42 - 82 9.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 502, 771
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 8 cut(s) 82, 94, 208, 300, 338, 607, 645, 742
AjnI CCWGG 2 cut(s) 369, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AleI CACNNNNGTG 1 cut(s) 787
AluBI AGCT 2 cut(s) 172, 603
AluI AGCT 2 cut(s) 172, 603
Alw21I GWGCWC 1 cut(s) 378
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 2 cut(s) 544, 622
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 4 cut(s) 179, 323, 545, 711
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 359, 532, 578
AsuII TTCGAA 1 cut(s) 393
AvaII GGWCC 3 cut(s) 179, 323, 711
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 695, 728
BauI CACGAG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 378
BciT130I CCWGG 2 cut(s) 371, 458
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 1 cut(s) 307
BfaI CTAG 3 cut(s) 593, 723, 767
BfmI CTRYAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 696
BglII AGATCT 2 cut(s) 130, 730
BlpI GCTNAGC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 771
Bme1390I CCNGG 3 cut(s) 307, 371, 458
Bme18I GGWCC 3 cut(s) 179, 323, 711
BmgT120I GGNCC 4 cut(s) 179, 323, 545, 711
BmiI GGNNCC 2 cut(s) 325, 712
BmrFI CCNGG 3 cut(s) 307, 371, 458
BmsI GCATC 1 cut(s) 448
Bpu1102I GCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 619
BpuMI CCSGG 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 196, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 3 cut(s) 66, 332, 622
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 371, 458
BseDI CCNNGG 2 cut(s) 196, 698
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 4 cut(s) 108, 153, 515, 644
BseNI ACTGG 3 cut(s) 66, 332, 622
BshFI GGCC 2 cut(s) 546, 624
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 2 cut(s) 306, 543
BslFI GGGAC 2 cut(s) 309, 700
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 309, 700
BsnI GGCC 2 cut(s) 546, 624
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 3 cut(s) 130, 154, 730
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 546, 624
BspCNI CTCAG 4 cut(s) 109, 154, 516, 643
BspLI GGNNCC 2 cut(s) 325, 712
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 3 cut(s) 66, 332, 622
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 196, 698
BssMI GATC 3 cut(s) 130, 154, 730
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 371, 458
Bst4CI ACNGT 2 cut(s) 500, 789
Bst6I CTCTTC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 7 cut(s) 29, 117, 162, 524, 584, 630, 773
BstKTI GATC 3 cut(s) 133, 157, 733
BstMBI GATC 3 cut(s) 130, 154, 730
BstNI CCWGG 2 cut(s) 371, 458
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 3 cut(s) 305, 369, 456
BstSFI CTRYAG 1 cut(s) 86
BstX2I RGATCY 3 cut(s) 130, 154, 730
BstYI RGATCY 3 cut(s) 130, 154, 730
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 2 cut(s) 546, 624
BtsIMutI CAGTG 2 cut(s) 59, 521
Cac8I GCNNGC 1 cut(s) 425
CaiI CAGNNNCTG 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 4 cut(s) 179, 323, 545, 711
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 2 cut(s) 501, 770
CviAII CATG 2 cut(s) 658, 707
CviQI GTAC 2 cut(s) 501, 770
DdeI CTNAG 7 cut(s) 29, 117, 162, 524, 584, 630, 773
DpnI GATC 3 cut(s) 132, 156, 732
DpnII GATC 3 cut(s) 130, 154, 730
DraIII CACNNNGTG 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 698
Eco32I GATATC 1 cut(s) 11
Eco47I GGWCC 3 cut(s) 179, 323, 711
Eco57I CTGAAG 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 369, 456
EcoRV GATATC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 2 cut(s) 661, 710
FaqI GGGAC 2 cut(s) 309, 700
FatI CATG 2 cut(s) 657, 706
FspBI CTAG 3 cut(s) 593, 723, 767
HaeIII GGCC 2 cut(s) 546, 624
HapII CCGG 2 cut(s) 306, 543
Hin1II CATG 2 cut(s) 661, 710
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 4 cut(s) 67, 82, 139, 166
HpaI GTTAAC 1 cut(s) 615
HpaII CCGG 2 cut(s) 306, 543
HphI GGTGA 3 cut(s) 359, 532, 578
Hpy166II GTNNAC 3 cut(s) 59, 354, 615
Hpy188I TCNGA 3 cut(s) 163, 200, 633
Hpy188III TCNNGA 4 cut(s) 116, 188, 260, 669
Hpy8I GTNNAC 3 cut(s) 59, 354, 615
HpyAV CCTTC 3 cut(s) 389, 443, 724
HpyCH4III ACNGT 2 cut(s) 500, 789
HpyCH4V TGCA 3 cut(s) 16, 88, 427
HpyF3I CTNAG 7 cut(s) 29, 117, 162, 524, 584, 630, 773
Hsp92II CATG 2 cut(s) 661, 710
KspAI GTTAAC 1 cut(s) 615
Kzo9I GATC 3 cut(s) 130, 154, 730
LweI GCATC 1 cut(s) 448
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 3 cut(s) 593, 723, 767
MaeIII GTNAC 1 cut(s) 452
MalI GATC 3 cut(s) 132, 156, 732
MboI GATC 3 cut(s) 130, 154, 730
MboII GAAGA 2 cut(s) 176, 581
MflI RGATCY 3 cut(s) 130, 154, 730
MhlI GDGCHC 1 cut(s) 378
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 9 cut(s) 112, 192, 206, 233, 287, 519, 635, 639, 752
MseI TTAA 2 cut(s) 144, 614
MslI CAYNNNNRTG 1 cut(s) 787
MspI CCGG 2 cut(s) 306, 543
MspR9I CCNGG 3 cut(s) 307, 371, 458
MvaI CCWGG 2 cut(s) 371, 458
NciI CCSGG 1 cut(s) 307
NdeII GATC 3 cut(s) 130, 154, 730
NlaIII CATG 2 cut(s) 661, 710
NlaIV GGNNCC 2 cut(s) 325, 712
NmuCI GTSAC 1 cut(s) 452
NspI RCATGY 1 cut(s) 661
NspV TTCGAA 1 cut(s) 393
OliI CACNNNNGTG 1 cut(s) 787
PciI ACATGT 1 cut(s) 657
PfeI GAWTC 3 cut(s) 67, 82, 166
PflMI CCANNNNNTGG 1 cut(s) 53
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 711
PscI ACATGT 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 369, 456
PspGI CCWGG 2 cut(s) 369, 456
PspN4I GGNNCC 2 cut(s) 325, 712
PspPI GGNCC 4 cut(s) 179, 323, 545, 711
PspPPI RGGWCCY 1 cut(s) 711
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 3 cut(s) 130, 154, 730
RsaI GTAC 2 cut(s) 502, 771
RsaNI GTAC 2 cut(s) 501, 770
RseI CAYNNNNRTG 1 cut(s) 787
SaqAI TTAA 2 cut(s) 144, 614
Sau3AI GATC 3 cut(s) 130, 154, 730
Sau96I GGNCC 4 cut(s) 179, 323, 545, 711
ScaI AGTACT 1 cut(s) 771
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 3 cut(s) 307, 371, 458
SduI GDGCHC 1 cut(s) 378
SetI ASST 8 cut(s) 174, 279, 372, 435, 459, 594, 605, 700
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 393
SinI GGWCC 3 cut(s) 179, 323, 711
SmiMI CAYNNNNRTG 1 cut(s) 787
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 417
SspMI CTAG 3 cut(s) 593, 723, 767
StyD4I CCNGG 3 cut(s) 305, 369, 456
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 2 cut(s) 500, 789
TaqI TCGA 2 cut(s) 137, 393
TatI WGTACW 1 cut(s) 769
TfiI GAWTC 3 cut(s) 67, 82, 166
Tru1I TTAA 2 cut(s) 144, 614
Tru9I TTAA 2 cut(s) 144, 614
TscAI CASTG 2 cut(s) 66, 528
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 499
TspRI CASTG 2 cut(s) 66, 528
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 3 cut(s) 179, 323, 711
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 661
XspI CTAG 3 cut(s) 593, 723, 767
ZrmI AGTACT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.