pycom10g28410

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
29013343 .. 29014663
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28410.1

Sequence Viewer

Length: 324 bp
ATGACATCTCTAAGATACCTAGACTTGAGCTTCAATTATTTAACCGGTGGCCTCCCTCATTATATGAAATCAGATATGATTTACATGTCTTTTTCTGGAAATATGCTTAACGGGCCAATCCCACGTTGGATATTTCGGGCCTCCCAAACTAGGATGTATGGATCTTTCGTTCAACAATTTTTCAGCAGTAGACTCTGCAGTTCCAAGCAACCTACAACTGAACTTGTTTGCCTGCTGCCCCAACTCCTCAACCTCTTTACCAGATATGATGGATACATTTGGAATGAAAAACACATACTGTCCTCGAAACAAACCAAAGTGTAA

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

9.59

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 190
AclWI GGATC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 150
AflIII ACRYGT 1 cut(s) 84
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 34, 173
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AlwI GGATC 1 cut(s) 169
AoxI GGCC 3 cut(s) 49, 113, 138
ApeKI GCWGC 1 cut(s) 235
AsiGI ACCGGT 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 113, 138
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 263
BciVI GTATCC 1 cut(s) 266
BfaI CTAG 2 cut(s) 20, 150
BfmI CTRYAG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 266
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 113, 138
BpuEI CTTGAG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 44
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 222
BshFI GGCC 3 cut(s) 51, 115, 140
BshTI ACCGGT 1 cut(s) 44
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 150
BsnI GGCC 3 cut(s) 51, 115, 140
Bsp143I GATC 1 cut(s) 161
BspANI GGCC 3 cut(s) 51, 115, 140
BspMAI CTGCAG 1 cut(s) 200
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 3 cut(s) 51, 115, 140
BtsCI GGATG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 113, 138
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 30, 51, 115, 140
CviKI_1 RGCY 4 cut(s) 30, 51, 115, 140
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
FaeI CATG 1 cut(s) 88
FaiI YATR 8 cut(s) 63, 65, 77, 86, 104, 159, 267, 296
FatI CATG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 2 cut(s) 20, 150
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 51, 115, 140
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 88
HinfI GANTC 1 cut(s) 192
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 4 cut(s) 58, 81, 245, 274
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 2 cut(s) 20, 150
MaeII ACGT 1 cut(s) 124
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MflI RGATCY 1 cut(s) 161
MluCI AATT 2 cut(s) 34, 176
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 6 cut(s) 62, 66, 151, 257, 263, 313
MseI TTAA 2 cut(s) 41, 108
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 161
NlaIII CATG 1 cut(s) 88
NspI RCATGY 1 cut(s) 88
PciI ACATGT 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PscI ACATGT 1 cut(s) 84
PspPI GGNCC 2 cut(s) 113, 138
PstI CTGCAG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 161
SaqAI TTAA 2 cut(s) 41, 108
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 2 cut(s) 113, 138
SchI GAGTC 1 cut(s) 186
SetI ASST 5 cut(s) 21, 32, 127, 214, 255
SfcI CTRYAG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 2 cut(s) 34, 176
SspMI CTAG 2 cut(s) 20, 150
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 305
TasI AATT 2 cut(s) 34, 176
Tru1I TTAA 2 cut(s) 41, 108
Tru9I TTAA 2 cut(s) 41, 108
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 80, 300
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 2 cut(s) 20, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.