Rmu_sc0004189.1_g000025

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004189.1
OG0000236
Physical Location & Seq
Reverse (-)
115711 .. 118859
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004189.1_g000025.1.cds

Sequence Viewer

Length: 1506 bp
atgctttctgggaaaattcctgattgggttcaaaatgcaacctggaaccattcattgtttataaattgtggtggtggagaagcacttgttgatggaaatgtttatgatcaagataatgatacatcacaattttacccgagtccaaaaggaaactgggctcggagtagtactggtagcaccgtggatctagaggatgcttccaattctagtatattcttaaaaaccgtgaaatgtgggctttcctctaaagcagttttatacgataatgctcgcacttcccctgtttctctaaaatattacgggttctgtttacgtaaaggcaaatacagtgtaacacttcactttgctgaaattgttgatgaggataacaattacagaaatacaactaaacgcgtatttgatgtatatattcagggtgagaggaaactgaaggatttcaacattatagacaaggtaggacgtcccaatgacatatatcaagaaaatttcacggctgttataaatgatggtacattagaggttcacttctactcagctggaaaagggcttgatcagggacctctcatatctgctatatccgctgaagtgcaagggaaaattgtagctgtaaagaaactgtcatctcattcagaggaaaggatcaatcagttgaagaatgagttctacaccttaaaatcaatgaatcaagagaaccttgttcagttgttggacgtttacaacacaaaaggcctgcatttgctcatctatgaatatatgcaaaacaactcccttgcacacgccttatttgactcaaagtcaaaactgaaacttgagtgggaagctaggtttaacatttgcttgggaatagctaggggattggtgtatctacatgagcatcccaggctgaagatggttcacagggacattaaatcagctaatattcttctcgatggaaacctcaaggctaaaatatcagactttggattggcaagcctttacaccgaagatgatcaattcaagttcatcaaagtagaagtgccacagggatatatggcacctgagtatgttcgaggaattgtgacatctaaagctgatgtctacagttttggggtggttatacttgaaactgttagtggaaggaaaaatgcaggacatgcgcgagatagccaggaaactgaatttcttttagacacggcttatgatttacagcaaaaaggaaggctggtggacttggttgacaaaacattgtctaccaagtatgatgcaaaacaagccattatcatcttgaatttagcagtaaagtgcaccagtatatccccaactctgaggcctactatgtctgaagttgtgagtgttctcgttggcgacaaaaaaattgaggagatttgtccccctgctctgaatgatagtcaaattgctcaagttgattcctctgtttctatggaagtaacctcgagagcatccacgtcatccaatttgatcaaaggggaagatgaaacagaacacatttctgagagtaccccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

501

Amino Acids

55.89

Weight (kDa)

5.84

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 62, 500
AatII GACGTC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 1033
AccI GTMKAC 2 cut(s) 1077, 1229
AccII CGCG 2 cut(s) 393, 1138
AciI CCGC 1 cut(s) 579
AclWI GGATC 2 cut(s) 192, 647
AcsI RAATTY 4 cut(s) 15, 484, 1157, 1267
AcuI CTGAAG 4 cut(s) 449, 603, 905, 1341
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 3 cut(s) 169, 511, 1498
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 6 cut(s) 32, 439, 652, 997, 1103, 1267
AhdI GACNNNNNGTC 1 cut(s) 793
AjiI CACGTC 1 cut(s) 1446
AjnI CCWGG 3 cut(s) 41, 878, 1146
AluBI AGCT 6 cut(s) 536, 605, 821, 848, 914, 1070
AluI AGCT 6 cut(s) 536, 605, 821, 848, 914, 1070
Alw21I GWGCWC 1 cut(s) 1286
Alw44I GTGCAC 1 cut(s) 1282
AlwI GGATC 2 cut(s) 192, 647
Ama87I CYCGRG 2 cut(s) 136, 1432
AoxI GGCC 2 cut(s) 727, 1307
ApaLI GTGCAC 1 cut(s) 1282
ApoI RAATTY 4 cut(s) 15, 484, 1157, 1267
Asp700I GAANNNNTTC 2 cut(s) 434, 659
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 136, 1432
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 1286
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 1286
BccI CCATC 4 cut(s) 86, 500, 883, 923
BceAI ACGGC 2 cut(s) 507, 1188
BciT130I CCWGG 3 cut(s) 43, 880, 1148
BclI TGATCA 4 cut(s) 106, 550, 988, 1458
BfaI CTAG 5 cut(s) 188, 207, 822, 849, 1504
BfmI CTRYAG 1 cut(s) 1078
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 3 cut(s) 43, 880, 1148
Bme18I GGWCC 1 cut(s) 557
BmeRI GACNNNNNGTC 1 cut(s) 793
BmeT110I CYCGRG 2 cut(s) 136, 1432
BmgBI CACGTC 1 cut(s) 1446
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 3 cut(s) 47, 558, 1035
BmrFI CCNGG 3 cut(s) 43, 880, 1148
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 4 cut(s) 184, 883, 1231, 1448
BmuI ACTGGG 1 cut(s) 163
BpuEI CTTGAG 3 cut(s) 830, 923, 1383
BsaAI YACGTR 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 180, 878
Bse1I ACTGG 3 cut(s) 158, 175, 1287
BseBI CCWGG 3 cut(s) 43, 880, 1148
BseDI CCNNGG 2 cut(s) 180, 878
BseGI GGATG 4 cut(s) 199, 874, 1439, 1448
BseMII CTCAG 4 cut(s) 546, 1029, 1295, 1482
BseNI ACTGG 3 cut(s) 158, 175, 1287
BseRI GAGGAG 1 cut(s) 1373
BseSI GKGCMC 1 cut(s) 1286
Bsh1236I CGCG 2 cut(s) 393, 1138
BshFI GGCC 2 cut(s) 729, 1309
BshNI GGYRCC 1 cut(s) 1033
BsiHKAI GWGCWC 1 cut(s) 1286
BsiHKCI CYCGRG 2 cut(s) 136, 1432
BslFI GGGAC 4 cut(s) 447, 570, 914, 1353
BsmFI GGGAC 4 cut(s) 447, 570, 914, 1353
BsnI GGCC 2 cut(s) 729, 1309
BsoBI CYCGRG 2 cut(s) 136, 1432
Bsp1286I GDGCHC 2 cut(s) 160, 1286
Bsp143I GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
BspACI CCGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 729, 1309
BspCNI CTCAG 4 cut(s) 545, 1030, 1296, 1483
BspFNI CGCG 2 cut(s) 393, 1138
BspLI GGNNCC 3 cut(s) 47, 558, 1035
BspPI GGATC 2 cut(s) 192, 647
BspT107I GGYRCC 1 cut(s) 1033
BsrI ACTGG 3 cut(s) 158, 175, 1287
BssECI CCNNGG 2 cut(s) 180, 878
BssMI GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
BssNI GRCGYC 1 cut(s) 460
Bst2UI CCWGG 3 cut(s) 43, 880, 1148
Bst4CI ACNGT 6 cut(s) 181, 226, 329, 618, 1082, 1108
BstACI GRCGYC 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 271, 731, 970
BstDEI CTNAG 4 cut(s) 532, 1038, 1304, 1491
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 199, 874, 1439, 1448
BstFNI CGCG 2 cut(s) 393, 1138
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 6 cut(s) 109, 187, 553, 642, 991, 1461
BstMBI GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
BstMWI GCNNNNNNNGC 4 cut(s) 578, 880, 1133, 1250
BstNI CCWGG 3 cut(s) 43, 880, 1148
BstNSI RCATGY 1 cut(s) 1136
BstSCI CCNGG 3 cut(s) 41, 878, 1146
BstSFI CTRYAG 1 cut(s) 1078
BstSLI GKGCMC 1 cut(s) 1286
BstSNI TACGTA 1 cut(s) 314
BstUI CGCG 2 cut(s) 393, 1138
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 729, 1309
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 1446
BtsCI GGATG 4 cut(s) 199, 874, 1439, 1448
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 271, 731, 970
CfoI GCGC 1 cut(s) 1138
Cfr13I GGNCC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 168, 510, 1497
CviAII CATG 2 cut(s) 869, 1133
CviQI GTAC 3 cut(s) 168, 510, 1497
DdeI CTNAG 4 cut(s) 532, 1038, 1304, 1491
DpnI GATC 6 cut(s) 108, 186, 552, 641, 990, 1460
DpnII GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
DriI GACNNNNNGTC 1 cut(s) 793
Eam1105I GACNNNNNGTC 1 cut(s) 793
Eco105I TACGTA 1 cut(s) 314
Eco147I AGGCCT 2 cut(s) 729, 1309
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 4 cut(s) 449, 603, 905, 1341
Eco88I CYCGRG 2 cut(s) 136, 1432
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 41, 878, 1146
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 872, 1136
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 4 cut(s) 447, 570, 914, 1353
FatI CATG 2 cut(s) 868, 1132
FbaI TGATCA 4 cut(s) 106, 550, 988, 1458
FblI GTMKAC 2 cut(s) 1077, 1229
FokI GGATG 4 cut(s) 206, 861, 1426, 1435
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 5 cut(s) 188, 207, 822, 849, 1504
GlaI GCGC 1 cut(s) 1137
HaeIII GGCC 2 cut(s) 729, 1309
HhaI GCGC 1 cut(s) 1138
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 2 cut(s) 872, 1136
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 4 cut(s) 139, 682, 788, 1406
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 9 cut(s) 311, 523, 715, 895, 1078, 1207, 1216, 1230, 1284
Hpy188I TCNGA 7 cut(s) 162, 631, 955, 1305, 1321, 1380, 1492
Hpy188III TCNNGA 8 cut(s) 20, 110, 188, 479, 686, 926, 1264, 1434
Hpy8I GTNNAC 9 cut(s) 311, 523, 715, 895, 1078, 1207, 1216, 1230, 1284
HpyAV CCTTC 3 cut(s) 424, 1110, 1191
HpyCH4III ACNGT 6 cut(s) 181, 226, 329, 618, 1082, 1108
HpyCH4IV ACGT 4 cut(s) 313, 460, 711, 1445
HpyCH4V TGCA 8 cut(s) 38, 589, 733, 757, 773, 1127, 1244, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 880, 1133, 1250
HpyF3I CTNAG 4 cut(s) 532, 1038, 1304, 1491
HpySE526I ACGT 4 cut(s) 313, 460, 711, 1445
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 2 cut(s) 872, 1136
HspAI GCGC 1 cut(s) 1136
Ksp22I TGATCA 4 cut(s) 106, 550, 988, 1458
Kzo9I GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
LweI GCATC 4 cut(s) 184, 883, 1231, 1448
MaeI CTAG 5 cut(s) 188, 207, 822, 849, 1504
MaeII ACGT 4 cut(s) 313, 460, 711, 1445
MaeIII GTNAC 3 cut(s) 331, 1057, 1426
MalI GATC 6 cut(s) 108, 186, 552, 641, 990, 1460
MboI GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
MboII GAAGA 5 cut(s) 664, 898, 914, 995, 1481
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 160, 1286
MluI ACGCGT 1 cut(s) 391
MlyI GAGTC 2 cut(s) 148, 782
MmeI TCCRAC 1 cut(s) 687
MroXI GAANNNNTTC 2 cut(s) 434, 659
MseI TTAA 4 cut(s) 218, 671, 828, 906
MspA1I CMGCKG 2 cut(s) 536, 581
MspR9I CCNGG 3 cut(s) 43, 880, 1148
MvaI CCWGG 3 cut(s) 43, 880, 1148
MvnI CGCG 2 cut(s) 393, 1138
MwoI GCNNNNNNNGC 4 cut(s) 578, 880, 1133, 1250
NdeII GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
NlaIII CATG 2 cut(s) 872, 1136
NlaIV GGNNCC 3 cut(s) 47, 558, 1035
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 1 cut(s) 1136
PaeR7I CTCGAG 1 cut(s) 1432
PceI AGGCCT 2 cut(s) 729, 1309
PdmI GAANNNNTTC 2 cut(s) 434, 659
PfeI GAWTC 2 cut(s) 682, 1406
PleI GAGTC 2 cut(s) 147, 782
PpsI GAGTC 2 cut(s) 147, 782
Ppu21I YACGTR 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 557
PsiI TTATAA 2 cut(s) 62, 500
Psp5II RGGWCCY 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 41, 878, 1146
PspGI CCWGG 3 cut(s) 41, 878, 1146
PspN4I GGNNCC 3 cut(s) 47, 558, 1035
PspPI GGNCC 1 cut(s) 557
PspPPI RGGWCCY 1 cut(s) 557
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 169, 511, 1498
RsaNI GTAC 3 cut(s) 168, 510, 1497
SaqAI TTAA 4 cut(s) 218, 671, 828, 906
Sau3AI GATC 6 cut(s) 106, 184, 550, 639, 988, 1458
Sau96I GGNCC 1 cut(s) 557
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 2 cut(s) 148, 782
ScrFI CCNGG 3 cut(s) 43, 880, 1148
SduI GDGCHC 2 cut(s) 160, 1286
SfaNI GCATC 4 cut(s) 184, 883, 1231, 1448
SfcI CTRYAG 1 cut(s) 1078
Sfr274I CTCGAG 1 cut(s) 1432
SinI GGWCC 1 cut(s) 557
SlaI CTCGAG 1 cut(s) 1432
SmlI CTYRAG 4 cut(s) 809, 938, 1398, 1432
SmoI CTYRAG 4 cut(s) 809, 938, 1398, 1432
SnaBI TACGTA 1 cut(s) 314
SseBI AGGCCT 2 cut(s) 729, 1309
SsiI CCGC 1 cut(s) 579
SspI AATATT 2 cut(s) 296, 919
SspMI CTAG 5 cut(s) 188, 207, 822, 849, 1504
StuI AGGCCT 2 cut(s) 729, 1309
StyD4I CCNGG 3 cut(s) 41, 878, 1146
TaaI ACNGT 6 cut(s) 181, 226, 329, 618, 1082, 1108
TaiI ACGT 4 cut(s) 316, 463, 714, 1448
TaqI TCGA 3 cut(s) 927, 1048, 1433
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 2 cut(s) 682, 1406
Tru1I TTAA 4 cut(s) 218, 671, 828, 906
Tru9I TTAA 4 cut(s) 218, 671, 828, 906
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 1057
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 5 cut(s) 42, 695, 762, 991, 1488
TspRI CASTG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 1282
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 4 cut(s) 15, 484, 1157, 1267
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 1 cut(s) 1136
XcmI CCANNNNNNNNNTGG 2 cut(s) 150, 886
XhoI CTCGAG 1 cut(s) 1432
XmiI GTMKAC 2 cut(s) 1077, 1229
XmnI GAANNNNTTC 2 cut(s) 434, 659
XspI CTAG 5 cut(s) 188, 207, 822, 849, 1504
ZraI GACGTC 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.