Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

5003719 .. 5007177

Gene Structure 3459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTGAGTTGGGTGAATGGGTTTTAGGAGATAGGATTGGGGAGGGGGGTTTCGGGTGTGTGTATAAGGGTTACCCACTCAAGCTTGAGAATGGGGCCCCTGGTATCATGGCCGTTAAGGTTGCAGAGGCCTCTCATCCATTCAAGGTTGATGCTTTGTTGGATGAGGCCAAGCTCCTTTCTCTCTTTCACCACTGCCCTTTTGTCATCAATTCTTACGGTCAACAGTGGGCTTCTTCCTCTCTCAATTTGTTTTTAGAATTTGCCGCTGGAGGCACCATTAGAGATAGGATTGACAATTCTGCATTGTCCGAATATGAGATTAAGGAGTTCACTAAGTCTGTGCTTAGTGGTCTCCAGTGCATTCATGACAAAGGTTATGTGCACTGCGACATAAAGCCCGACAATATTCTTCTTGTCCATGGTATGGATTCTCCTGTCGATTTCATGGCTAAGATAGGAGACTTTGGATTAACTAAGAGTGCTCAGAACTTGCATTCTCGCCAAGGCACTAAATGGTATTTGCCTCCTGAAACTGTTCTCTGTAACATTCAGGGGAAACCATCTGATATTTGGGCAGTAGGATGTCTAGTTCTAGAGATGTTGACTGGTTCGTTGTGGACTTGTAAGTCAACTGAGTACCTAGGCGTTTGGGCTTCTAATCCAGTTATTCCTTCACACTTGTCTGATGACGCCAAGGATTTTTTGGCAAAGTGTCTAGATGTAGATGCTTACAAGAGATTTACGGCTCGGCGTCTCTTAGCTCACCCATTTCTTATGAGTAATCAGAGTGTTGAACAATTACCCAAATCGCCTACATTGTCACAATCTCAGCGTTGTCATAATCGGTTGCCTAGTTTTATACCCTTAGGGGACTCTAGCTCCCATGAGGCACAAATGCCCATTGAGAGTTCTGGATTAGATGATGATACCATTTTCCCTTTGGCACTCATGTCAAGACCTGTAAGACATGCGGTTGCAGACAAATGGTGGAGGAATGATTCTGAATTTGGTGGACACATTCTATACAGAAGGGGCAATGTATCAGGTGGACTTTCACCGCATGGGAAATTTGGCGTGTTTGTCTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

365

Amino Acids

40.28

Weight (kDa)

6.15

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 254	4.1e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 259	1.7e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	3 cut(s)	267, 974, 1061
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	260, 1007, 1070
AcyI	GRCGYC	2 cut(s)	693, 754
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	145, 797
AjnI	CCWGG	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	85, 175, 764, 882
AluI	AGCT	4 cut(s)	85, 175, 764, 882
Alw21I	GWGCWC	2 cut(s)	387, 487
Alw26I	GTCTC	3 cut(s)	359, 456, 761
Alw44I	GTGCAC	1 cut(s)	383
AoxI	GGCC	4 cut(s)	96, 111, 129, 168
ApaI	GGGCCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	383
ApoI	RAATTY	3 cut(s)	260, 1007, 1070
Asp700I	GAANNNNTTC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	96, 97
AsuHPI	GGTGA	5 cut(s)	17, 26, 182, 758, 1050
AvrII	CCTAGG	1 cut(s)	643
AxyI	CCTNAGG	1 cut(s)	868
BaeGI	GKGCMC	2 cut(s)	100, 387
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	387, 487
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	98, 762
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	359, 456, 761
BfaI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
BisI	GCNGC	1 cut(s)	267
BlnI	CCTAGG	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	96, 97
BmiI	GGNNCC	4 cut(s)	97, 98, 99, 277
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	142, 718
BpmI	CTGGAG	2 cut(s)	291, 341
BpuEI	CTTGAG	2 cut(s)	65, 107
BsaHI	GRCGYC	2 cut(s)	693, 754
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	5 cut(s)	100, 421, 505, 643, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	866, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	358, 613, 665
Bse21I	CCTNAGG	1 cut(s)	868
Bse3DI	GCAATG	1 cut(s)	1045
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	5 cut(s)	100, 421, 505, 643, 696
BseGI	GGATG	3 cut(s)	136, 169, 590
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	1045
BseMII	CTCAG	3 cut(s)	500, 627, 845
BseNI	ACTGG	3 cut(s)	358, 613, 665
BseSI	GKGCMC	2 cut(s)	100, 387
BshFI	GGCC	4 cut(s)	98, 113, 131, 170
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	387, 487
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	3 cut(s)	359, 456, 761
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	2 cut(s)	363, 496
BsnI	GGCC	4 cut(s)	98, 113, 131, 170
Bso31I	GGTCTC	1 cut(s)	359
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	100, 387, 487
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	3 cut(s)	267, 974, 1061
BspANI	GGCC	4 cut(s)	98, 113, 131, 170
BspCNI	CTCAG	3 cut(s)	499, 628, 844
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	97, 98, 99, 277
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	1045
BsrI	ACTGG	3 cut(s)	358, 613, 665
BssECI	CCNNGG	5 cut(s)	100, 421, 505, 643, 696
BssNI	GRCGYC	2 cut(s)	693, 754
BssT1I	CCWWGG	4 cut(s)	421, 505, 643, 696
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	221, 228, 538
BstACI	GRCGYC	2 cut(s)	693, 754
BstDEI	CTNAG	9 cut(s)	336, 347, 453, 477, 486, 636, 760, 831, 868
BstDSI	CCRYGG	1 cut(s)	421
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	136, 169, 590
BstMAI	GTCTC	3 cut(s)	359, 456, 761
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	974
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	100, 387
Bsu36I	CCTNAGG	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	98, 113, 131, 170
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	136, 169, 590
BtsI	GCAGTG	2 cut(s)	193, 385
BtsIMutI	CAGTG	4 cut(s)	193, 233, 365, 385
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	96, 97
CseI	GACGC	2 cut(s)	701, 743
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	8 cut(s)	109, 368, 422, 448, 887, 952, 971, 1064
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	9 cut(s)	336, 347, 453, 477, 486, 636, 760, 831, 868
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	4 cut(s)	421, 505, 643, 696
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	868
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	96, 97
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	4 cut(s)	421, 505, 643, 696
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	4 cut(s)	421, 505, 643, 696
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	8 cut(s)	112, 371, 425, 451, 890, 955, 974, 1067
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	8 cut(s)	108, 367, 421, 447, 886, 951, 970, 1063
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	123, 176, 597
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	291, 341
HaeIII	GGCC	4 cut(s)	98, 113, 131, 170
HgaI	GACGC	2 cut(s)	701, 743
Hin1I	GRCGYC	2 cut(s)	693, 754
Hin1II	CATG	8 cut(s)	112, 371, 425, 451, 890, 955, 974, 1067
HincII	GTYRAC	3 cut(s)	224, 606, 633
HindII	GTYRAC	3 cut(s)	224, 606, 633
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	431, 875, 1001
HphI	GGTGA	5 cut(s)	17, 26, 182, 758, 1050
Hpy166II	GTNNAC	8 cut(s)	224, 333, 385, 606, 621, 633, 1016, 1052
Hpy188I	TCNGA	7 cut(s)	313, 489, 568, 688, 789, 1006, 1094
Hpy188III	TCNNGA	6 cut(s)	368, 530, 596, 719, 915, 957
Hpy8I	GTNNAC	8 cut(s)	224, 333, 385, 606, 621, 633, 1016, 1052
HpyAV	CCTTC	2 cut(s)	684, 1026
HpyCH4III	ACNGT	3 cut(s)	221, 228, 538
HpyCH4V	TGCA	6 cut(s)	125, 305, 363, 385, 496, 980
HpyF3I	CTNAG	9 cut(s)	336, 347, 453, 477, 486, 636, 760, 831, 868
Hsp92I	GRCGYC	2 cut(s)	693, 754
Hsp92II	CATG	8 cut(s)	112, 371, 425, 451, 890, 955, 974, 1067
LmnI	GCTCC	2 cut(s)	180, 887
LweI	GCATC	2 cut(s)	142, 718
MaeI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
MaeIII	GTNAC	3 cut(s)	71, 545, 822
MboII	GAAGA	2 cut(s)	228, 404
MhlI	GDGCHC	3 cut(s)	100, 387, 487
MluCI	AATT	7 cut(s)	211, 247, 260, 298, 800, 1007, 1070
MlyI	GAGTC	1 cut(s)	869
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	9 cut(s)	37, 121, 142, 160, 250, 266, 537, 883, 987
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	117, 324, 473
MspA1I	CMGCKG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	2 cut(s)	363, 496
MvaI	CCWGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	421
NlaIII	CATG	8 cut(s)	112, 371, 425, 451, 890, 955, 974, 1067
NlaIV	GGNNCC	4 cut(s)	97, 98, 99, 277
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	822
NspI	RCATGY	1 cut(s)	974
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	131
PctI	GAATGC	2 cut(s)	363, 496
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	431, 1001
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	97, 98, 99, 277
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	96, 97
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	117, 324, 473
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	96, 97
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	3 cut(s)	100, 387, 487
SfaNI	GCATC	2 cut(s)	142, 718
SmlI	CTYRAG	2 cut(s)	80, 86
SmoI	CTYRAG	2 cut(s)	80, 86
Sse9I	AATT	7 cut(s)	211, 247, 260, 298, 800, 1007, 1070
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	267, 974, 1061
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	4 cut(s)	421, 505, 643, 696
TaaI	ACNGT	3 cut(s)	221, 228, 538
TaqI	TCGA	1 cut(s)	441
TasI	AATT	7 cut(s)	211, 247, 260, 298, 800, 1007, 1070
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	431, 1001
Tru1I	TTAA	3 cut(s)	117, 324, 473
Tru9I	TTAA	3 cut(s)	117, 324, 473
TscAI	CASTG	4 cut(s)	200, 233, 365, 392
TseFI	GTSAC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	2 cut(s)	356, 436
TspRI	CASTG	4 cut(s)	200, 233, 365, 392
Van91I	CCANNNNNTGG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	260, 1007, 1070
XbaI	TCTAGA	2 cut(s)	595, 718
XceI	RCATGY	1 cut(s)	974
XcmI	CCANNNNNNNNNTGG	3 cut(s)	570, 703, 940
XmaJI	CCTAGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.