Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Forward (+)

4287526 .. 4291646

Gene Structure 4121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03770.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGTGAGTTGGGTGAATGGGTTTTAGGAGATAGGATTGGGGAGGGGGGTTTCGGGTGTGTGTATAAGGGTTACCCACTCAAGCTTGAGAATGGGGCCCCTGGTATCATGGCCGTTAAGGTTGCAGAGGCCTCTCATCCATTCAAGGTTGATGCTTTGTTGGATGAGGCCAAGCTCCTTTCTCTCTTTCACCACTGCCCTTTTGTCATCAATTCTTACGGTCAACAGTGGGCTTCTTCCTCTCTCAATTTGTTTTTAGAATTTGCCGCTGGAGGCACCATTAGAGATAGGATTGACAATTCTGCATTGTCCGAATATGAGATTAAGGAGTTCACTAAGTCTGTGCTTAGTGGTCTCCAGTGCATTCATGACAAAGGTTATGTGCACTGCGACATAAAGCCCGACAATATTCTTCTTGTCCATGATATGGATTCTCCTGTCGATTTTGTGGCTAAGATAGGAGACTTTGGATTAACTAAGAGTGCTCAGAACTTGCATTCTCGCCAAGGCACTAAATGGTATTTGCCTCCTGAAACTGTTCTCTGTAACATTCAGGGGAAACCGTCTGATATTTGGGCAGTAGGATGTCTAGTTCTAGAGATGTTGACTGGTTCGTTGTGGACTTGTAAGTCAACTGAGTACCTAGGCGTTTGGGCTTCTAATCCAGTTATTCCTTCACACTTGTCTGATGACGCCAAGGATTTTTTGGCAAAGTGTCTAGATGTAGATGCTTATAAGAGATTTACGGCTCGGCGTCTCTTAGCTCACTCATTTCTTATGAGTAATCAGAGTGTTGAAAAATTACCCAAATCGCCTACATTGTCACAATCTCAGCATTGTCATAATCGGTTGCCTAGTTTTATACCCTTAGGGGACTCTAGTTCCCATGAGGCACAAATGCCCATTGAGAGTTCTGGATTAGATGATGATACCATTTTCCCTTTGGCACTCATGTCAAGACCTGGTCTCCTAAGGTCAAATGGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

36.18

Weight (kDa)

5.72

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 255	2.1e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	11 - 260	2.9e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	693, 754
AfaI	GTAC	1 cut(s)	641
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	145, 797
AjnI	CCWGG	2 cut(s)	100, 961
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	3 cut(s)	85, 175, 764
AluI	AGCT	3 cut(s)	85, 175, 764
Alw21I	GWGCWC	2 cut(s)	387, 487
Alw26I	GTCTC	4 cut(s)	359, 456, 761, 971
Alw44I	GTGCAC	1 cut(s)	383
AoxI	GGCC	4 cut(s)	96, 111, 129, 168
ApaI	GGGCCC	1 cut(s)	100
ApaLI	GTGCAC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	96, 97
AsuHPI	GGTGA	3 cut(s)	17, 26, 182
AvrII	CCTAGG	1 cut(s)	643
AxyI	CCTNAGG	2 cut(s)	868, 971
BaeGI	GKGCMC	2 cut(s)	100, 387
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	387, 487
BceAI	ACGGC	2 cut(s)	98, 762
BciT130I	CCWGG	2 cut(s)	102, 963
BcoDI	GTCTC	4 cut(s)	359, 456, 761, 971
BfaI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
BisI	GCNGC	1 cut(s)	267
BlnI	CCTAGG	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	102, 963
BmgT120I	GGNCC	2 cut(s)	96, 97
BmiI	GGNNCC	4 cut(s)	97, 98, 99, 277
BmrFI	CCNGG	2 cut(s)	102, 963
BmsI	GCATC	2 cut(s)	142, 718
BpmI	CTGGAG	2 cut(s)	291, 341
BpuEI	CTTGAG	2 cut(s)	65, 107
BsaHI	GRCGYC	2 cut(s)	693, 754
BsaI	GGTCTC	2 cut(s)	359, 971
BsaJI	CCNNGG	4 cut(s)	100, 505, 643, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	951, 981
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	358, 613, 665
Bse21I	CCTNAGG	2 cut(s)	868, 971
BseBI	CCWGG	2 cut(s)	102, 963
BseDI	CCNNGG	4 cut(s)	100, 505, 643, 696
BseGI	GGATG	3 cut(s)	136, 169, 590
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	500, 627, 845
BseNI	ACTGG	3 cut(s)	358, 613, 665
BseSI	GKGCMC	2 cut(s)	100, 387
BshFI	GGCC	4 cut(s)	98, 113, 131, 170
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	387, 487
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	4 cut(s)	359, 456, 761, 971
BsmBI	CGTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	2 cut(s)	363, 496
BsnI	GGCC	4 cut(s)	98, 113, 131, 170
Bso31I	GGTCTC	2 cut(s)	359, 971
Bsp120I	GGGCCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	100, 387, 487
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	4 cut(s)	98, 113, 131, 170
BspCNI	CTCAG	3 cut(s)	499, 628, 844
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	97, 98, 99, 277
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	359, 971
BsrI	ACTGG	3 cut(s)	358, 613, 665
BssECI	CCNNGG	4 cut(s)	100, 505, 643, 696
BssNI	GRCGYC	2 cut(s)	693, 754
BssT1I	CCWWGG	3 cut(s)	505, 643, 696
Bst2UI	CCWGG	2 cut(s)	102, 963
Bst4CI	ACNGT	4 cut(s)	221, 228, 538, 564
BstACI	GRCGYC	2 cut(s)	693, 754
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	136, 169, 590
BstMAI	GTCTC	4 cut(s)	359, 456, 761, 971
BstNI	CCWGG	2 cut(s)	102, 963
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	100, 961
BstSLI	GKGCMC	2 cut(s)	100, 387
Bsu36I	CCTNAGG	2 cut(s)	868, 971
BsuRI	GGCC	4 cut(s)	98, 113, 131, 170
BtsCI	GGATG	3 cut(s)	136, 169, 590
BtsI	GCAGTG	2 cut(s)	193, 385
BtsIMutI	CAGTG	4 cut(s)	193, 233, 365, 385
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	96, 97
CseI	GACGC	2 cut(s)	701, 743
CsiI	ACCWGGT	1 cut(s)	961
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	5 cut(s)	109, 368, 422, 887, 952
CviQI	GTAC	1 cut(s)	640
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	3 cut(s)	505, 643, 696
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	359, 971
Eco81I	CCTNAGG	2 cut(s)	868, 971
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	96, 97
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	100, 961
EcoT14I	CCWWGG	3 cut(s)	505, 643, 696
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	3 cut(s)	505, 643, 696
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	5 cut(s)	112, 371, 425, 890, 955
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	5 cut(s)	108, 367, 421, 886, 951
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	123, 176, 597
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	291, 341
HaeIII	GGCC	4 cut(s)	98, 113, 131, 170
HgaI	GACGC	2 cut(s)	701, 743
Hin1I	GRCGYC	2 cut(s)	693, 754
Hin1II	CATG	5 cut(s)	112, 371, 425, 890, 955
HincII	GTYRAC	3 cut(s)	224, 606, 633
HindII	GTYRAC	3 cut(s)	224, 606, 633
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	431, 875, 984
HphI	GGTGA	3 cut(s)	17, 26, 182
Hpy166II	GTNNAC	6 cut(s)	224, 333, 385, 606, 621, 633
Hpy188I	TCNGA	6 cut(s)	313, 489, 568, 688, 789, 989
Hpy188III	TCNNGA	6 cut(s)	368, 530, 596, 719, 915, 957
Hpy8I	GTNNAC	6 cut(s)	224, 333, 385, 606, 621, 633
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	4 cut(s)	221, 228, 538, 564
HpyCH4V	TGCA	5 cut(s)	125, 305, 363, 385, 496
Hsp92I	GRCGYC	2 cut(s)	693, 754
Hsp92II	CATG	5 cut(s)	112, 371, 425, 890, 955
LmnI	GCTCC	1 cut(s)	180
LweI	GCATC	2 cut(s)	142, 718
MabI	ACCWGGT	1 cut(s)	961
MaeI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
MaeIII	GTNAC	3 cut(s)	71, 545, 822
MboII	GAAGA	2 cut(s)	228, 404
MhlI	GDGCHC	3 cut(s)	100, 387, 487
MluCI	AATT	5 cut(s)	211, 247, 260, 298, 800
MlyI	GAGTC	2 cut(s)	869, 978
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	37, 121, 142, 160, 250, 266, 537, 883
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	117, 324, 473
MspA1I	CMGCKG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	102, 963
Mva1269I	GAATGC	2 cut(s)	363, 496
MvaI	CCWGG	2 cut(s)	102, 963
NlaIII	CATG	5 cut(s)	112, 371, 425, 890, 955
NlaIV	GGNNCC	4 cut(s)	97, 98, 99, 277
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	822
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	131
PctI	GAATGC	2 cut(s)	363, 496
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	963
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	869, 978
PpsI	GAGTC	2 cut(s)	869, 978
PsiI	TTATAA	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	100, 961
PspEI	GGTNACC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	100, 961
PspN4I	GGNNCC	4 cut(s)	97, 98, 99, 277
PspOMI	GGGCCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	96, 97
PsyI	GACNNNGTC	1 cut(s)	963
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	117, 324, 473
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	96, 97
SchI	GAGTC	2 cut(s)	869, 978
ScrFI	CCNGG	2 cut(s)	102, 963
SduI	GDGCHC	3 cut(s)	100, 387, 487
SetI	ASST	9 cut(s)	87, 123, 150, 177, 379, 645, 766, 964, 977
SexAI	ACCWGGT	1 cut(s)	961
SfaNI	GCATC	2 cut(s)	142, 718
SmlI	CTYRAG	2 cut(s)	80, 86
SmoI	CTYRAG	2 cut(s)	80, 86
Sse9I	AATT	5 cut(s)	211, 247, 260, 298, 800
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	267
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	100, 961
StyI	CCWWGG	3 cut(s)	505, 643, 696
TaaI	ACNGT	4 cut(s)	221, 228, 538, 564
TaqI	TCGA	1 cut(s)	441
TasI	AATT	5 cut(s)	211, 247, 260, 298, 800
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	3 cut(s)	117, 324, 473
Tru9I	TTAA	3 cut(s)	117, 324, 473
TscAI	CASTG	4 cut(s)	200, 233, 365, 392
TseFI	GTSAC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	4 cut(s)	200, 233, 365, 392
Tth111I	GACNNNGTC	1 cut(s)	963
Van91I	CCANNNNNTGG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	2 cut(s)	595, 718
XcmI	CCANNNNNNNNNTGG	2 cut(s)	703, 940
XmaJI	CCTAGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	6 cut(s)	590, 596, 644, 719, 855, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.