Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

69232235 .. 69232987

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG479100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTTTTCACGACTCGTCCGACGAAAACAAGTAAGAAACTGCCTCTGATTATGGACGTGAAGTCGGCAGACTTGTCGGAATCGACAGACTTGGCTAAAGAAAGTCGACTCCTCAAGAAATTTCGGAATTGCCCTTTTATCTTAAACACGTATGGCAGTGATGTGACGGAAGAAGATGAAGGTGAGAAGTTGTTCAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAAGATTGTATAAAGACACTGAGGAATTTCGAGTTGTTTGAGCAGCACGTAAGGAAGCATACACTGTCGGTTTTGAAGGGGCTTAAGTACATTCATGACAAGGGATTTGTGCATTGTGACATTAAGCCCACAAATATATTCCTTGTAAGTAATGATCCTAAGGATACTGGGTTTGGCTCTTACATAGCGAAAATCGGGGATTTTAGGCTAGCGAAAAGGGCTACCAAAAACAATGTGGTGAAGCGTTCTGAACAAATACATGGCACTGGATTGTATATGTCTCCAAAAGTATCAATTCAAAACATTCTTGAGCCGTCGGCTGACATTTGGGCACTAGGCTGCAGTGTTCTACAGATGCTGACTGGGAAGAGATTTTGGTATTTCAATACTGACTTAAAAGATGACTGGGGGTTTCCAATTGAGATTCCAATTATTCCGGAAGAGCTAAACGATGAGGCTGAGGATTTTTTGGGGAAGTACTTCATAGTGAACCCTCTAGGTACATGGCTGAGATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

250

Amino Acids

28.73

Weight (kDa)

6.96

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 208	7.6e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 199	1.5e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	667
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	119, 256
AfaI	GTAC	3 cut(s)	320, 710, 733
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	4 cut(s)	196, 307, 530, 616
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	58
AluBI	AGCT	1 cut(s)	676
AluI	AGCT	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	589
Aor13HI	TCCGGA	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	274, 570
ApoI	RAATTY	2 cut(s)	119, 256
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp700I	GAANNNNTTC	2 cut(s)	191, 710
AsuHPI	GGTGA	2 cut(s)	194, 481
AsuNHI	GCTAGC	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	2 cut(s)	286, 557
BceAI	ACGGC	1 cut(s)	529
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	3 cut(s)	440, 566, 728
BfmI	CTRYAG	2 cut(s)	571, 581
BfrI	CTTAAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	275, 571
BlsI	GCNGC	2 cut(s)	276, 572
BmcAI	AGTACT	1 cut(s)	710
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	226
BmrI	ACTGGG	3 cut(s)	408, 603, 646
BmsI	GCATC	2 cut(s)	576, 734
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	3 cut(s)	408, 603, 646
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	98, 560
BsaAI	YACGTR	2 cut(s)	150, 280
BsaWI	WCCGGW	1 cut(s)	667
Bse1I	ACTGG	4 cut(s)	403, 502, 598, 641
Bse21I	CCTNAGG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	667
BseMII	CTCAG	3 cut(s)	242, 681, 731
BseNI	ACTGG	4 cut(s)	403, 502, 598, 641
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	286, 557
BsiSI	CCGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	1 cut(s)	385
BspCNI	CTCAG	3 cut(s)	243, 682, 732
BspEI	TCCGGA	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	575
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	4 cut(s)	403, 502, 598, 641
BssMI	GATC	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	2 cut(s)	593, 666
BstAFI	CTTAAG	1 cut(s)	314
BstBAI	YACGTR	2 cut(s)	150, 280
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	251, 390, 690, 740
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstSFI	CTRYAG	2 cut(s)	571, 581
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	286, 557
Bsu36I	CCTNAGG	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	58
BtsI	GCAGTG	2 cut(s)	163, 580
BtsIMutI	CAGTG	5 cut(s)	163, 248, 293, 495, 580
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	589
CciI	TCATGA	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	319, 709, 732
CviAII	CATG	3 cut(s)	326, 491, 735
CviQI	GTAC	3 cut(s)	319, 709, 732
DdeI	CTNAG	4 cut(s)	251, 390, 690, 740
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	593, 666
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	2 cut(s)	593, 666
Eco81I	CCTNAGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	329, 494, 738
FatI	CATG	3 cut(s)	325, 490, 734
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	275, 571
Fsp4HI	GCNGC	2 cut(s)	275, 571
FspBI	CTAG	3 cut(s)	440, 566, 728
GluI	GCNGC	2 cut(s)	275, 571
HapII	CCGG	1 cut(s)	668
Hin1II	CATG	3 cut(s)	329, 494, 738
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	4 cut(s)	13, 80, 108, 655
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	194, 481
Hpy166II	GTNNAC	2 cut(s)	107, 721
Hpy188I	TCNGA	5 cut(s)	21, 48, 79, 126, 481
Hpy188III	TCNNGA	5 cut(s)	10, 115, 326, 539, 668
Hpy8I	GTNNAC	2 cut(s)	107, 721
Hpy99I	CGWCG	2 cut(s)	25, 550
HpyAV	CCTTC	2 cut(s)	173, 301
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	4 cut(s)	57, 149, 198, 279
HpyCH4V	TGCA	2 cut(s)	343, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	4 cut(s)	251, 390, 690, 740
HpySE526I	ACGT	4 cut(s)	57, 149, 198, 279
Hsp92II	CATG	3 cut(s)	329, 494, 738
Kpn2I	TCCGGA	1 cut(s)	667
Kzo9I	GATC	1 cut(s)	385
LguI	GCTCTTC	1 cut(s)	666
LpnPI	CCDG	5 cut(s)	384, 483, 579, 622, 681
Lsp1109I	GCAGC	2 cut(s)	286, 557
LweI	GCATC	2 cut(s)	576, 734
MaeI	CTAG	3 cut(s)	440, 566, 728
MaeII	ACGT	4 cut(s)	57, 149, 198, 279
MaeIII	GTNAC	2 cut(s)	163, 347
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	5 cut(s)	182, 185, 245, 610, 683
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	6 cut(s)	119, 127, 256, 525, 648, 660
MlyI	GAGTC	2 cut(s)	7, 102
MmeI	TCCRAC	2 cut(s)	44, 57
MnlI	CCTC	7 cut(s)	54, 122, 215, 246, 679, 685, 735
MroI	TCCGGA	1 cut(s)	667
MroXI	GAANNNNTTC	2 cut(s)	191, 710
MseI	TTAA	4 cut(s)	143, 315, 354, 626
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	1 cut(s)	385
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	3 cut(s)	329, 494, 738
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	163, 347
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	191, 710
PfeI	GAWTC	2 cut(s)	80, 655
PkrI	GCNGC	2 cut(s)	276, 572
PleI	GAGTC	2 cut(s)	7, 102
PpsI	GAGTC	2 cut(s)	7, 102
Ppu21I	YACGTR	2 cut(s)	150, 280
Psp1406I	AACGTT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	589
RsaI	GTAC	3 cut(s)	320, 710, 733
RsaNI	GTAC	3 cut(s)	319, 709, 732
SalI	GTCGAC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	143, 315, 354, 626
SatI	GCNGC	2 cut(s)	275, 571
Sau3AI	GATC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	2 cut(s)	7, 102
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	7 cut(s)	60, 152, 184, 201, 282, 678, 733
SfaNI	GCATC	2 cut(s)	576, 734
SfcI	CTRYAG	2 cut(s)	571, 581
SmlI	CTYRAG	3 cut(s)	113, 314, 539
SmoI	CTYRAG	3 cut(s)	113, 314, 539
Sse9I	AATT	6 cut(s)	119, 127, 256, 525, 648, 660
SspMI	CTAG	3 cut(s)	440, 566, 728
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	4 cut(s)	60, 152, 201, 282
TaqI	TCGA	3 cut(s)	83, 106, 261
TasI	AATT	6 cut(s)	119, 127, 256, 525, 648, 660
TatI	WGTACW	2 cut(s)	318, 708
TfiI	GAWTC	2 cut(s)	80, 655
Tru1I	TTAA	4 cut(s)	143, 315, 354, 626
Tru9I	TTAA	4 cut(s)	143, 315, 354, 626
TscAI	CASTG	5 cut(s)	163, 255, 300, 502, 580
TseFI	GTSAC	2 cut(s)	163, 347
TseI	GCWGC	2 cut(s)	274, 570
Tsp45I	GTSAC	2 cut(s)	163, 347
TspDTI	ATGAA	3 cut(s)	192, 314, 703
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	5 cut(s)	163, 255, 300, 502, 580
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	119, 256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	106
XmnI	GAANNNNTTC	2 cut(s)	191, 710
XspI	CTAG	3 cut(s)	440, 566, 728
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.