Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

60167460 .. 60174521

Gene Structure 7062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG444300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCCTGAAGTCGGCAGACTTGTCGGAATCGGCGGACTTGGCTAAAGAAAGACTTCTCAAGAAATTTTGGAATTGCCCCTTTATCTTAAACGCATATGGCAGCGATGTGACGGAAGAAGATGAAGGTGTGAAGTTGTTCAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAAGATTGTATAAAGACACTGAGGAATTTCGAGTTGTTTGAGCAGCACGTAAGGAAGTATACACTGTCGGTTTTGAAGGGGCTTAAGTACATTCATGACAAGGGATTTATGCATTGTGACATTAAGCCCGCAAATATATTCCTTGTAAGTAATGATCCTAAGGATACTGGGTTTGGCTCTTACGTAGCGAAAATCAGGGATTTTGGGCTAGTGAAAAGGGCTACCAAAAACAATGTGGTGAAGCGTTCTGAACAAATACATGGCACTGGATTGTATATGTCTCCAGAAGTATCAATTCAAAACATTCTTCAGCGGTCGGCTGACATTTGGGCACTAGGCTGCAGTGTTCTGCAAATGCTAACTGGGAAGAGATTTTGGTATTTCAATACTGACTTAAAAGATGACTGGGGGTTTCCAATTGAGATTTCGATTATTCCGGAAGAGCTAAACGATGAGGCTGAGGATTTTTTTGGGGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

219

Amino Acids

25.12

Weight (kDa)

5.34

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 181	5.2e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 189	8e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	3 cut(s)	35, 306, 490
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	65, 202
AcuI	CTGAAG	2 cut(s)	29, 470
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	142, 253, 476, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AluBI	AGCT	1 cut(s)	622
AluI	AGCT	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	102, 220, 516
ApoI	RAATTY	2 cut(s)	65, 202
Asp700I	GAANNNNTTC	2 cut(s)	54, 137
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	114, 232, 503
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	386, 512
BfmI	CTRYAG	1 cut(s)	517
BfrI	CTTAAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	103, 221, 517
BlsI	GCNGC	3 cut(s)	104, 222, 518
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	172
BmrI	ACTGGG	3 cut(s)	354, 549, 592
BmuI	ACTGGG	3 cut(s)	354, 549, 592
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	2 cut(s)	226, 361
BsaWI	WCCGGW	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	4 cut(s)	349, 448, 544, 587
Bse21I	CCTNAGG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	188, 627
BseNI	ACTGG	4 cut(s)	349, 448, 544, 587
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	114, 232, 503
Bsh1285I	CGRYCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	3 cut(s)	35, 306, 490
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	189, 628
BspEI	TCCGGA	1 cut(s)	613
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	521
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	612
BspTI	CTTAAG	1 cut(s)	260
BsrI	ACTGG	4 cut(s)	349, 448, 544, 587
BssMI	GATC	1 cut(s)	331
BssNAI	GTATAC	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	539, 612
BstAFI	CTTAAG	1 cut(s)	260
BstBAI	YACGTR	2 cut(s)	226, 361
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	197, 336, 636
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	494
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	511
BstSNI	TACGTA	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	114, 232, 503
BstZ17I	GTATAC	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	4 cut(s)	194, 239, 441, 526
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	272, 437
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	197, 336, 636
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	539, 612
EarI	CTCTTC	2 cut(s)	539, 612
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	29, 470
Eco81I	CCTNAGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	291
FaeI	CATG	2 cut(s)	275, 440
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	2 cut(s)	271, 436
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	3 cut(s)	103, 221, 517
Fsp4HI	GCNGC	3 cut(s)	103, 221, 517
FspBI	CTAG	2 cut(s)	386, 512
GluI	GCNGC	3 cut(s)	103, 221, 517
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	2 cut(s)	275, 440
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	28, 427
Hpy188III	TCNNGA	4 cut(s)	61, 272, 461, 614
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	119, 247
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	3 cut(s)	144, 225, 360
HpyCH4V	TGCA	3 cut(s)	289, 519, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	197, 336, 636
HpySE526I	ACGT	3 cut(s)	144, 225, 360
Hsp92II	CATG	2 cut(s)	275, 440
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	612
LpnPI	CCDG	8 cut(s)	20, 330, 358, 429, 474, 525, 568, 627
Lsp1109I	GCAGC	3 cut(s)	114, 232, 503
MaeI	CTAG	2 cut(s)	386, 512
MaeII	ACGT	3 cut(s)	144, 225, 360
MaeIII	GTNAC	2 cut(s)	109, 293
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	6 cut(s)	128, 131, 191, 476, 556, 629
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	5 cut(s)	65, 73, 202, 471, 594
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	4 cut(s)	161, 192, 625, 631
Mph1103I	ATGCAT	1 cut(s)	291
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	2 cut(s)	54, 137
MseI	TTAA	5 cut(s)	89, 261, 300, 572, 658
MspA1I	CMGCKG	1 cut(s)	490
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	614
MunI	CAATTG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	275, 440
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	109, 293
NsiI	ATGCAT	1 cut(s)	291
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	612
PdmI	GAANNNNTTC	2 cut(s)	54, 137
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	104, 222, 518
Ppu21I	YACGTR	2 cut(s)	226, 361
Psp1406I	AACGTT	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	89, 261, 300, 572, 658
SatI	GCNGC	3 cut(s)	103, 221, 517
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	5 cut(s)	130, 147, 228, 363, 624
SfcI	CTRYAG	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	59, 260
SmoI	CTYRAG	2 cut(s)	59, 260
SnaBI	TACGTA	1 cut(s)	361
Sse9I	AATT	5 cut(s)	65, 73, 202, 471, 594
SsiI	CCGC	3 cut(s)	35, 306, 490
SspMI	CTAG	2 cut(s)	386, 512
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	3 cut(s)	147, 228, 363
TaqI	TCGA	2 cut(s)	207, 605
TasI	AATT	5 cut(s)	65, 73, 202, 471, 594
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	5 cut(s)	89, 261, 300, 572, 658
Tru9I	TTAA	5 cut(s)	89, 261, 300, 572, 658
TscAI	CASTG	4 cut(s)	201, 246, 448, 526
TseFI	GTSAC	2 cut(s)	109, 293
TseI	GCWGC	3 cut(s)	102, 220, 516
Tsp45I	GTSAC	2 cut(s)	109, 293
TspDTI	ATGAA	2 cut(s)	138, 260
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	4 cut(s)	201, 246, 448, 526
Vha464I	CTTAAG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	65, 202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	236
XmnI	GAANNNNTTC	2 cut(s)	54, 137
XspI	CTAG	2 cut(s)	386, 512
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.