FvH4_6g36890

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001298
Physical Location & Seq
Forward (+)
28965081 .. 28966327
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36890.t1

Sequence Viewer

Length: 987 bp
ATGGAGATATTGGAGAAGAAGAGAAAAAGAATTTATGCAGAAGGGCCAGATTTCGGCAACGCCAAAAGATGGGTCCGGCAACGCTTCCTCGGCGCAGGACAATTCGGGACAGTTTTCTTGGCTTGTCCGGCGAAACCAGGTTCCAAAATGCCGCCGGTTATGGCCGTGAAGTCGGCGAGGCTCTCGGAATCTGCCGACTTGGTTAAAGAAAGTCGACTTCTCAAGAAGTTCAAGAACTGCCCGTTTATCATCGACACTTACGGCAGCGACGTGACTAAAGATCTTGAAGGTGAAGAGGAGTTGTTCAACGTTCTACTAGAGTTTGCACAAAGAGGAACCCTAGAGGATTGGATTCAGAAACTCAAGAACTTGGGGCTGCATGAGGCACACGTAAGGAGGTATACGCAGTCACTCTTGAAGGGCCTCAAGTACATGCATGGCAAGGGTTTTGTTCACTGTGACATTAAGCCTGCCAATGTGTTGCTAGTGCGTGAAGGTCCTGACGATACCGGGTTTGGTTCTTACGTGGCGAAGATCGGGGATCTAGGGCTGGCAAAGAAGGCTGACAAGTACAATCTGATGAAGCGTTCTGATTATATAAATGGCACTGAATTGTATATGTCTCCAGAAGTGTCACTTGACAACGTTCAGGAGCCTCCGGCAGATATTTGGGCATTAGGCTGCACTGTTCTGCAGACCTTGACAGGGATGGAGTACTGGGATGTGAGCACTAACTGTAAAGAGGGCTGCGGGGTTCGGATTGATGCTCCGGTCATCCCGGAAAGGCTAAGCAACGAGGCAAAGGATTTCTTGGGGAAGTGCTTCATATTGAACCCTTTGGAGAGGTACACGGCTGAGATGCTTTTGAAGCACCCTTTTGTGTGCAACAGTTTGCCAATTTGGACAGTCTCTCGTGATCAATTGGTTCCAAGAAGACGAGTGTGCCAAGAACCAGCTGCAATTCCTCTGGTGGGTGCAGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

329

Amino Acids

36.85

Weight (kDa)

8.61

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 26 - 294 3.3e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 289 2.2e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 69
AccI GTMKAC 2 cut(s) 214, 401
AciI CCGC 2 cut(s) 152, 750
AclI AACGTT 2 cut(s) 309, 645
AclWI GGATC 1 cut(s) 549
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 4 cut(s) 431, 572, 716, 848
AfiI CCNNNNNNNGG 4 cut(s) 53, 69, 705, 971
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 6 cut(s) 232, 287, 307, 418, 832, 868
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 956
AluI AGCT 1 cut(s) 956
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 2 cut(s) 627, 913
AlwI GGATC 1 cut(s) 549
AoxI GGCC 3 cut(s) 44, 162, 421
ApeKI GCWGC 5 cut(s) 264, 376, 681, 747, 956
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
Asp700I GAANNNNTTC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 4 cut(s) 44, 73, 421, 497
AsuC2I CCSGG 2 cut(s) 511, 779
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 73, 497
BauI CACGAG 1 cut(s) 912
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 5 cut(s) 276, 363, 668, 734, 943
BccI CCATC 2 cut(s) 63, 703
BceAI ACGGC 3 cut(s) 149, 277, 867
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 2 cut(s) 511, 779
BcoDI GTCTC 2 cut(s) 627, 913
BfaI CTAG 4 cut(s) 317, 341, 485, 545
BfmI CTRYAG 1 cut(s) 692
BglII AGATCT 1 cut(s) 280
BisI GCNGC 6 cut(s) 152, 265, 377, 682, 748, 957
BlpI GCTNAGC 1 cut(s) 788
BlsI GCNGC 6 cut(s) 153, 266, 378, 683, 749, 958
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 138, 511, 779
Bme18I GGWCC 2 cut(s) 73, 497
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 4 cut(s) 44, 73, 421, 497
BmiI GGNNCC 5 cut(s) 74, 142, 337, 654, 927
BmrFI CCNGG 3 cut(s) 138, 511, 779
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 2 cut(s) 754, 849
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 940
BpmI CTGGAG 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 788
BpuEI CTTGAG 3 cut(s) 206, 347, 410
BpuMI CCSGG 2 cut(s) 511, 779
BsaAI YACGTR 2 cut(s) 391, 526
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 769
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 69, 705, 971
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 714, 727, 774
BseLI CCNNNNNNNGG 4 cut(s) 53, 69, 705, 971
BseMII CTCAG 1 cut(s) 846
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 5 cut(s) 276, 363, 668, 734, 943
BsgI GTGCAG 1 cut(s) 667
BshFI GGCC 3 cut(s) 46, 164, 423
BsiHKAI GWGCWC 1 cut(s) 731
BsiSI CCGG 7 cut(s) 76, 128, 155, 510, 659, 770, 779
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 4 cut(s) 53, 69, 705, 971
BsmAI GTCTC 2 cut(s) 627, 913
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 46, 164, 423
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 4 cut(s) 280, 534, 541, 916
Bsp1720I GCTNAGC 1 cut(s) 788
BspACI CCGC 2 cut(s) 152, 750
BspANI GGCC 3 cut(s) 46, 164, 423
BspCNI CTCAG 1 cut(s) 847
BspLI GGNNCC 5 cut(s) 74, 142, 337, 654, 927
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 1 cut(s) 722
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 4 cut(s) 280, 534, 541, 916
BssNAI GTATAC 1 cut(s) 402
BssSI CACGAG 1 cut(s) 912
Bst1107I GTATAC 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 6 cut(s) 112, 458, 688, 737, 890, 907
Bst6I CTCTTC 2 cut(s) 14, 288
BstBAI YACGTR 2 cut(s) 391, 526
BstC8I GCNNGC 2 cut(s) 471, 552
BstDEI CTNAG 2 cut(s) 788, 855
BstF5I GGATG 3 cut(s) 714, 727, 774
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 4 cut(s) 283, 537, 544, 919
BstMAI GTCTC 2 cut(s) 627, 913
BstMBI GATC 4 cut(s) 280, 534, 541, 916
BstMWI GCNNNNNNNGC 4 cut(s) 90, 128, 560, 868
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 3 cut(s) 136, 509, 777
BstSFI CTRYAG 1 cut(s) 692
BstV1I GCAGC 5 cut(s) 276, 363, 668, 734, 943
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 2 cut(s) 280, 541
BstYI RGATCY 2 cut(s) 280, 541
BstZ17I GTATAC 1 cut(s) 402
BsuRI GGCC 3 cut(s) 46, 164, 423
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 714, 727, 774
BtsIMutI CAGTG 3 cut(s) 454, 606, 684
Cac8I GCNNGC 2 cut(s) 471, 552
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 4 cut(s) 44, 73, 421, 497
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 4 cut(s) 430, 571, 715, 847
CviAII CATG 3 cut(s) 380, 433, 437
CviQI GTAC 4 cut(s) 430, 571, 715, 847
DdeI CTNAG 2 cut(s) 788, 855
DpnI GATC 4 cut(s) 282, 536, 543, 918
DpnII GATC 4 cut(s) 280, 534, 541, 916
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 14, 288
EarI CTCTTC 2 cut(s) 14, 288
Eco47I GGWCC 2 cut(s) 73, 497
EcoO109I RGGNCCY 2 cut(s) 421, 497
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 3 cut(s) 383, 436, 440
FalI AAGNNNNNCTT 4 cut(s) 621, 653, 794, 826
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 379, 432, 436
FauI CCCGC 1 cut(s) 743
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 2 cut(s) 214, 401
Fnu4HI GCNGC 6 cut(s) 152, 265, 377, 682, 748, 957
FokI GGATG 3 cut(s) 721, 734, 761
Fsp4HI GCNGC 6 cut(s) 152, 265, 377, 682, 748, 957
FspBI CTAG 4 cut(s) 317, 341, 485, 545
GlaI GCGC 1 cut(s) 94
GluI GCNGC 6 cut(s) 152, 265, 377, 682, 748, 957
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 46, 164, 423
HapII CCGG 7 cut(s) 76, 128, 155, 510, 659, 770, 779
HhaI GCGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 383, 436, 440
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 2 cut(s) 188, 352
HpaII CCGG 7 cut(s) 76, 128, 155, 510, 659, 770, 779
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 4 cut(s) 215, 402, 454, 849
Hpy188I TCNGA 5 cut(s) 187, 357, 579, 592, 759
Hpy8I GTNNAC 4 cut(s) 215, 402, 454, 849
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 35, 281, 412, 488, 553
HpyCH4III ACNGT 6 cut(s) 112, 458, 688, 737, 890, 907
HpyCH4IV ACGT 5 cut(s) 270, 309, 390, 525, 645
HpyCH4V TGCA 9 cut(s) 38, 326, 379, 436, 684, 694, 885, 959, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 128, 560, 868
HpyF3I CTNAG 2 cut(s) 788, 855
HpySE526I ACGT 5 cut(s) 270, 309, 390, 525, 645
Hsp92II CATG 3 cut(s) 383, 436, 440
HspAI GCGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 4 cut(s) 280, 534, 541, 916
LmnI GCTCC 2 cut(s) 652, 772
Lsp1109I GCAGC 5 cut(s) 276, 363, 668, 734, 943
LweI GCATC 2 cut(s) 754, 849
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 4 cut(s) 317, 341, 485, 545
MaeII ACGT 5 cut(s) 270, 309, 390, 525, 645
MaeIII GTNAC 4 cut(s) 271, 408, 458, 633
MalI GATC 4 cut(s) 282, 536, 543, 918
MboI GATC 4 cut(s) 280, 534, 541, 916
MboII GAAGA 5 cut(s) 28, 31, 305, 544, 945
MfeI CAATTG 1 cut(s) 920
MflI RGATCY 2 cut(s) 280, 541
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 6 cut(s) 30, 101, 611, 897, 920, 960
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 821
MseI TTAA 2 cut(s) 204, 465
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 7 cut(s) 76, 128, 155, 510, 659, 770, 779
MspR9I CCNGG 3 cut(s) 138, 511, 779
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 90, 128, 560, 868
NciI CCSGG 2 cut(s) 511, 779
NdeII GATC 4 cut(s) 280, 534, 541, 916
NlaIII CATG 3 cut(s) 383, 436, 440
NlaIV GGNNCC 5 cut(s) 74, 142, 337, 654, 927
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 4 cut(s) 271, 408, 458, 633
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 2 cut(s) 188, 352
PflMI CCANNNNNTGG 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 6 cut(s) 153, 266, 378, 683, 749, 958
Ppu21I YACGTR 2 cut(s) 391, 526
PpuMI RGGWCCY 1 cut(s) 497
Psp1406I AACGTT 2 cut(s) 309, 645
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 5 cut(s) 74, 142, 337, 654, 927
PspPI GGNCC 4 cut(s) 44, 73, 421, 497
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 1 cut(s) 696
PsuI RGATCY 2 cut(s) 280, 541
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 4 cut(s) 431, 572, 716, 848
RsaNI GTAC 4 cut(s) 430, 571, 715, 847
SalI GTCGAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 204, 465
SatI GCNGC 6 cut(s) 152, 265, 377, 682, 748, 957
Sau3AI GATC 4 cut(s) 280, 534, 541, 916
Sau96I GGNCC 4 cut(s) 44, 73, 421, 497
ScaI AGTACT 1 cut(s) 716
ScrFI CCNGG 3 cut(s) 138, 511, 779
SduI GDGCHC 1 cut(s) 731
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 2 cut(s) 754, 849
SfcI CTRYAG 1 cut(s) 692
SinI GGWCC 2 cut(s) 73, 497
SmlI CTYRAG 3 cut(s) 221, 362, 425
SmoI CTYRAG 3 cut(s) 221, 362, 425
Sse9I AATT 6 cut(s) 30, 101, 611, 897, 920, 960
SsiI CCGC 2 cut(s) 152, 750
SspMI CTAG 4 cut(s) 317, 341, 485, 545
StyD4I CCNGG 3 cut(s) 136, 509, 777
TaaI ACNGT 6 cut(s) 112, 458, 688, 737, 890, 907
TaiI ACGT 5 cut(s) 273, 312, 393, 528, 648
TaqI TCGA 2 cut(s) 214, 252
TasI AATT 6 cut(s) 30, 101, 611, 897, 920, 960
TatI WGTACW 3 cut(s) 429, 570, 714
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 188, 352
Tru1I TTAA 2 cut(s) 204, 465
Tru9I TTAA 2 cut(s) 204, 465
TscAI CASTG 3 cut(s) 461, 613, 691
TseFI GTSAC 4 cut(s) 271, 408, 458, 633
TseI GCWGC 5 cut(s) 264, 376, 681, 747, 956
Tsp45I GTSAC 4 cut(s) 271, 408, 458, 633
TspDTI ATGAA 2 cut(s) 596, 814
TspRI CASTG 3 cut(s) 461, 613, 691
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 73, 497
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 436
XmiI GTMKAC 2 cut(s) 214, 401
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 4 cut(s) 317, 341, 485, 545
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.