Rmu_sc0000873.1_g000015

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0001298
Physical Location & Seq
Forward (+)
49244 .. 50260
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000015.1.cds

Sequence Viewer

Length: 1017 bp
atgactgcatcagactattttaaggccatggaaaagctcgagaagaagaggaaaagaatccaggaggaagagccggattctggcaacgtcggtcggaccaaacggtgggttcgacaaaggttcctcggcgcaggacaattcggtacggttttcttggctagtccggccaaaccaggttccaaactgccgccggttatggccgtgaagtcggcgatgctctcggaatctgccgacttggttaaagaaagtcgacttctcaagaaattcaagaactgcccttttatccttgacacttacggcagcgatgtgactaaagatgttgaaggtgaggagttgttcaacgttttcttggagtatgctcaaagaggaaccgtagaggattggattcagaaactcaagaatttcgggttgcatgagctgcacgtaaggaggtatacgcagtcactattgaaggggctcaattacattcatggaaagggttttgtgcactgtgacattaagcccgccaatgtattgctagtgcgtgacggtcctgatgataccgggtttggatcttacgtggcgaaaatcggggatttagggctggcaaagagggctgacaagtacaatgtgatgaagcgttctgattatataaatggcactgagttgtatatgtctccagaagtatcgcttcacaacattcaggagccgccggccgacatttgggcattaggctgcactgttctgcagatgttaactgggatggagttttgggatgtgaacactgacttaagagatgactggggggttccgattgagattccgattatccctgaaaggctgagcaacgaggctaaggatttcttggggaagtgcttcatattggaccctttggagaggtacacggctgagatgcttttgaagcaccctttcgtgtgcaacagcttgcgaatatggacagtctcgtctggtgaattggttccaagaagccgagtttgccaaggaccagctgcaattcctctgctgggtgcggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

338

Amino Acids

38.07

Weight (kDa)

7.59

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 2 cut(s) 250, 434
AciI CCGC 4 cut(s) 188, 504, 689, 1010
AclI AACGTT 1 cut(s) 342
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 3 cut(s) 165, 198, 693
AcsI RAATTY 2 cut(s) 263, 400
AfaI GTAC 3 cut(s) 145, 605, 881
AfiI CCNNNNNNNGG 4 cut(s) 80, 105, 702, 1004
AflII CTTAAG 1 cut(s) 769
AgsI TTSAA 5 cut(s) 268, 323, 340, 451, 901
AjnI CCWGG 2 cut(s) 60, 172
AluBI AGCT 4 cut(s) 37, 418, 924, 989
AluI AGCT 4 cut(s) 37, 418, 924, 989
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 2 cut(s) 660, 946
Alw44I GTGCAC 1 cut(s) 485
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 4 cut(s) 24, 165, 198, 693
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 4 cut(s) 300, 418, 714, 989
ApoI RAATTY 2 cut(s) 263, 400
Asp700I GAANNNNTTC 2 cut(s) 854, 957
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 4 cut(s) 96, 530, 865, 983
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 338, 962
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 4 cut(s) 96, 530, 865, 983
BaeGI GKGCMC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 4 cut(s) 312, 405, 701, 976
BccI CCATC 1 cut(s) 736
BceAI ACGGC 3 cut(s) 185, 313, 900
BciT130I CCWGG 2 cut(s) 62, 174
BcnI CCSGG 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 660, 946
BfaI CTAG 2 cut(s) 159, 518
BfmI CTRYAG 1 cut(s) 725
BfrI CTTAAG 1 cut(s) 769
BisI GCNGC 7 cut(s) 188, 301, 419, 689, 715, 990, 1011
BlpI GCTNAGC 1 cut(s) 821
BlsI GCNGC 7 cut(s) 189, 302, 420, 690, 716, 991, 1012
Bme1390I CCNGG 3 cut(s) 62, 174, 544
Bme18I GGWCC 4 cut(s) 96, 530, 865, 983
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 4 cut(s) 96, 530, 865, 983
BmiI GGNNCC 7 cut(s) 122, 178, 370, 687, 789, 867, 960
BmrFI CCNGG 3 cut(s) 62, 174, 544
BmrI ACTGGG 2 cut(s) 747, 790
BmsI GCATC 3 cut(s) 17, 204, 882
BmuI ACTGGG 2 cut(s) 747, 790
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 834
Bpu1102I GCTNAGC 1 cut(s) 821
BpuEI CTTGAG 2 cut(s) 242, 380
BpuMI CCSGG 1 cut(s) 544
BsaAI YACGTR 2 cut(s) 424, 559
BsaJI CCNNGG 3 cut(s) 27, 124, 979
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 105, 702, 1004
Bse118I RCCGGY 2 cut(s) 190, 691
Bse1I ACTGG 2 cut(s) 742, 785
BseBI CCWGG 2 cut(s) 62, 174
BseDI CCNNGG 3 cut(s) 27, 124, 979
BseGI GGATG 2 cut(s) 747, 760
BseLI CCNNNNNNNGG 4 cut(s) 80, 105, 702, 1004
BseMII CTCAG 3 cut(s) 633, 812, 879
BseNI ACTGG 2 cut(s) 742, 785
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 489
BseX3I CGGCCG 1 cut(s) 693
BseXI GCAGC 4 cut(s) 312, 405, 701, 976
BseYI CCCAGC 1 cut(s) 1003
BsgI GTGCAG 2 cut(s) 404, 700
Bsh1285I CGRYCG 2 cut(s) 94, 696
BshFI GGCC 4 cut(s) 26, 167, 200, 695
BsiEI CGRYCG 2 cut(s) 94, 696
BsiHKAI GWGCWC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 5 cut(s) 74, 164, 191, 543, 692
BslI CCNNNNNNNGG 4 cut(s) 80, 105, 702, 1004
BsmAI GTCTC 2 cut(s) 660, 946
BsnI GGCC 4 cut(s) 26, 167, 200, 695
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 459, 489
Bsp143I GATC 1 cut(s) 551
Bsp1720I GCTNAGC 1 cut(s) 821
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 4 cut(s) 188, 504, 689, 1010
BspANI GGCC 4 cut(s) 26, 167, 200, 695
BspCNI CTCAG 3 cut(s) 634, 813, 880
BspLI GGNNCC 7 cut(s) 122, 178, 370, 687, 789, 867, 960
BspMAI CTGCAG 1 cut(s) 729
BspPI GGATC 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 769
BsrFI RCCGGY 2 cut(s) 190, 691
BsrI ACTGG 2 cut(s) 742, 785
BssAI RCCGGY 2 cut(s) 190, 691
BssECI CCNNGG 3 cut(s) 27, 124, 979
BssMI GATC 1 cut(s) 551
BssNAI GTATAC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 27, 979
Bst1107I GTATAC 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 62, 174
Bst4CI ACNGT 7 cut(s) 105, 148, 373, 491, 530, 721, 940
Bst6I CTCTTC 2 cut(s) 41, 63
BstAFI CTTAAG 1 cut(s) 769
BstAPI GCANNNNNTGC 1 cut(s) 418
BstBAI YACGTR 2 cut(s) 424, 559
BstC8I GCNNGC 4 cut(s) 504, 585, 693, 926
BstDEI CTNAG 4 cut(s) 642, 821, 834, 888
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 747, 760
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 554
BstMAI GTCTC 2 cut(s) 660, 946
BstMBI GATC 1 cut(s) 551
BstMCI CGRYCG 2 cut(s) 94, 696
BstMWI GCNNNNNNNGC 5 cut(s) 164, 418, 593, 901, 975
BstNI CCWGG 2 cut(s) 62, 174
BstSCI CCNGG 3 cut(s) 60, 172, 542
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 489
BstV1I GCAGC 4 cut(s) 312, 405, 701, 976
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZ17I GTATAC 1 cut(s) 435
BstZI CGGCCG 1 cut(s) 693
BsuRI GGCC 4 cut(s) 26, 167, 200, 695
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 2 cut(s) 227, 318
BtsCI GGATG 2 cut(s) 747, 760
BtsIMutI CAGTG 4 cut(s) 487, 639, 717, 762
Cac8I GCNNGC 4 cut(s) 504, 585, 693, 926
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 2 cut(s) 190, 691
Cfr13I GGNCC 4 cut(s) 96, 530, 865, 983
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 3 cut(s) 144, 604, 880
CviAII CATG 3 cut(s) 28, 413, 470
CviQI GTAC 3 cut(s) 144, 604, 880
DdeI CTNAG 4 cut(s) 642, 821, 834, 888
DpnI GATC 1 cut(s) 553
DpnII GATC 1 cut(s) 551
DrdI GACNNNNNNGTC 1 cut(s) 943
DseDI GACNNNNNNGTC 1 cut(s) 943
EaeI YGGCCR 3 cut(s) 165, 198, 693
EagI CGGCCG 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 41, 63
EarI CTCTTC 2 cut(s) 41, 63
EclXI CGGCCG 1 cut(s) 693
Eco130I CCWWGG 2 cut(s) 27, 979
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 4 cut(s) 96, 530, 865, 983
Eco52I CGGCCG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 60, 172
EcoT14I CCWWGG 2 cut(s) 27, 979
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 27, 979
FaeI CATG 3 cut(s) 31, 416, 473
FalI AAGNNNNNCTT 4 cut(s) 654, 686, 827, 859
FatI CATG 3 cut(s) 27, 412, 469
FauI CCCGC 1 cut(s) 511
FblI GTMKAC 2 cut(s) 250, 434
Fnu4HI GCNGC 7 cut(s) 188, 301, 419, 689, 715, 990, 1011
FokI GGATG 2 cut(s) 754, 767
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 7 cut(s) 188, 301, 419, 689, 715, 990, 1011
FspBI CTAG 2 cut(s) 159, 518
GlaI GCGC 1 cut(s) 130
GluI GCNGC 7 cut(s) 188, 301, 419, 689, 715, 990, 1011
GsaI CCCAGC 1 cut(s) 1007
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 4 cut(s) 26, 167, 200, 695
HapII CCGG 5 cut(s) 74, 164, 191, 543, 692
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 31, 416, 473
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 2 cut(s) 251, 735
HindII GTYRAC 2 cut(s) 251, 735
HinfI GANTC 5 cut(s) 57, 77, 224, 385, 799
HpaI GTTAAC 1 cut(s) 735
HpaII CCGG 5 cut(s) 74, 164, 191, 543, 692
HphI GGTGA 2 cut(s) 338, 962
Hpy166II GTNNAC 6 cut(s) 251, 435, 487, 735, 760, 882
Hpy188I TCNGA 7 cut(s) 13, 96, 223, 390, 625, 792, 804
Hpy188III TCNNGA 7 cut(s) 40, 259, 268, 397, 533, 659, 683
Hpy8I GTNNAC 6 cut(s) 251, 435, 487, 735, 760, 882
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 317, 445
HpyCH4III ACNGT 7 cut(s) 105, 148, 373, 491, 530, 721, 940
HpyCH4IV ACGT 4 cut(s) 87, 342, 423, 558
HpyCH4V TGCA 8 cut(s) 8, 412, 421, 487, 717, 727, 918, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 418, 593, 901, 975
HpyF3I CTNAG 4 cut(s) 642, 821, 834, 888
HpySE526I ACGT 4 cut(s) 87, 342, 423, 558
Hsp92II CATG 3 cut(s) 31, 416, 473
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 691
KroNI GCCGGC 1 cut(s) 693
KspAI GTTAAC 1 cut(s) 735
Kzo9I GATC 1 cut(s) 551
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 4 cut(s) 312, 405, 701, 976
LweI GCATC 3 cut(s) 17, 204, 882
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 2 cut(s) 159, 518
MaeII ACGT 4 cut(s) 87, 342, 423, 558
MaeIII GTNAC 4 cut(s) 307, 441, 491, 524
MalI GATC 1 cut(s) 553
MboI GATC 1 cut(s) 551
MboII GAAGA 3 cut(s) 55, 58, 80
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 459, 489
MluCI AATT 6 cut(s) 137, 263, 400, 460, 953, 993
MmeI TCCRAC 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 691
MroXI GAANNNNTTC 2 cut(s) 854, 957
MseI TTAA 5 cut(s) 21, 240, 498, 734, 770
MspA1I CMGCKG 1 cut(s) 989
MspCI CTTAAG 1 cut(s) 769
MspI CCGG 5 cut(s) 74, 164, 191, 543, 692
MspR9I CCNGG 3 cut(s) 62, 174, 544
MvaI CCWGG 2 cut(s) 62, 174
MwoI GCNNNNNNNGC 5 cut(s) 164, 418, 593, 901, 975
NaeI GCCGGC 1 cut(s) 693
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 551
NgoMIV GCCGGC 1 cut(s) 691
NlaIII CATG 3 cut(s) 31, 416, 473
NlaIV GGNNCC 7 cut(s) 122, 178, 370, 687, 789, 867, 960
NmeAIII GCCGAG 2 cut(s) 105, 995
NmuCI GTSAC 4 cut(s) 307, 441, 491, 524
PaeR7I CTCGAG 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 693
PdmI GAANNNNTTC 2 cut(s) 854, 957
PfeI GAWTC 5 cut(s) 57, 77, 224, 385, 799
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 7 cut(s) 189, 302, 420, 690, 716, 991, 1012
Ppu21I YACGTR 2 cut(s) 424, 559
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 60, 172
PspFI CCCAGC 1 cut(s) 1003
PspGI CCWGG 2 cut(s) 60, 172
PspN4I GGNNCC 7 cut(s) 122, 178, 370, 687, 789, 867, 960
PspPI GGNCC 4 cut(s) 96, 530, 865, 983
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 3 cut(s) 145, 605, 881
RsaNI GTAC 3 cut(s) 144, 604, 880
SalI GTCGAC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 5 cut(s) 21, 240, 498, 734, 770
SatI GCNGC 7 cut(s) 188, 301, 419, 689, 715, 990, 1011
Sau3AI GATC 1 cut(s) 551
Sau96I GGNCC 4 cut(s) 96, 530, 865, 983
ScrFI CCNGG 3 cut(s) 62, 174, 544
SduI GDGCHC 2 cut(s) 459, 489
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 3 cut(s) 17, 204, 882
SfcI CTRYAG 1 cut(s) 725
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 4 cut(s) 96, 530, 865, 983
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 4 cut(s) 38, 257, 395, 769
SmoI CTYRAG 4 cut(s) 38, 257, 395, 769
Sse9I AATT 6 cut(s) 137, 263, 400, 460, 953, 993
SsiI CCGC 4 cut(s) 188, 504, 689, 1010
SspMI CTAG 2 cut(s) 159, 518
StyD4I CCNGG 3 cut(s) 60, 172, 542
StyI CCWWGG 2 cut(s) 27, 979
TaaI ACNGT 7 cut(s) 105, 148, 373, 491, 530, 721, 940
TaiI ACGT 4 cut(s) 90, 345, 426, 561
TaqI TCGA 3 cut(s) 39, 112, 250
TaqII GACCGA 1 cut(s) 80
TasI AATT 6 cut(s) 137, 263, 400, 460, 953, 993
TatI WGTACW 1 cut(s) 603
TauI GCSGC 3 cut(s) 190, 691, 1013
TfiI GAWTC 5 cut(s) 57, 77, 224, 385, 799
Tru1I TTAA 5 cut(s) 21, 240, 498, 734, 770
Tru9I TTAA 5 cut(s) 21, 240, 498, 734, 770
TscAI CASTG 4 cut(s) 494, 646, 724, 769
TseFI GTSAC 4 cut(s) 307, 441, 491, 524
TseI GCWGC 4 cut(s) 300, 418, 714, 989
Tsp45I GTSAC 4 cut(s) 307, 441, 491, 524
TspDTI ATGAA 3 cut(s) 458, 629, 847
TspRI CASTG 4 cut(s) 494, 646, 724, 769
Van91I CCANNNNNTGG 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 769
VneI GTGCAC 1 cut(s) 485
VpaK11BI GGWCC 4 cut(s) 96, 530, 865, 983
XapI RAATTY 2 cut(s) 263, 400
XhoI CTCGAG 1 cut(s) 38
XmiI GTMKAC 2 cut(s) 250, 434
XmnI GAANNNNTTC 2 cut(s) 854, 957
XspI CTAG 2 cut(s) 159, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.