Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

62977533 .. 62978562

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTCGTCCTGCGAAAACAAGTAAGAAACTGCCTCCGATTATGGCCGTGAAGTCGGCAGACTTGTCGGAATCGGCGGACTTGGCTAAAGAAAGTCGACTTCTCAAGAAATTTCGGAACTGCCCTTTTATCTTAAACACGTATGGCAGCGATGTGACTGAAGAAGATGAAGGTGAGAAGTTATTCAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAAGATTGTATAAAGACACCGAGGAATTTCGAGTTGTTTGAGCAGCAAGTAAGGAAGTATACACTGTCGGTTTTGAAGGGGCTTAAGTACATTCATGACAAGGGATTTGTGCACTGTGACATTAAGCCCGCAAATATATTCCTTGTAAGTAATGATCCTAAGGATACTGGGTTTGGCTCTTACGTAGCGAAAATCAGGGATTTTGGGCTAGCGAAAAGGGCTGCCAAAAACAATGTGGTGAAGCGTTCTGAACAAATACATGGCACTGGATTGTATATGTCTCCAGAAGTATCAATTCAAAGCATTCTTGAGCCGCCGGCTGACATTGGGGCACTAGGCTGCGGTGTCCTGCAGATGCTGACGGGAAGAGATTTTGGGATTTCAATACTGACTTCAAAGATTTTGGCTTGCCAATCTGGACAGTCTCATCTTGTGATTTGGTTCCGAGCACAATGTGCCAAGAACCATCTGCAATTCCTCCTGTTTGGAAATGTTCAGTTTCCTGGTACTATAAGGAAAGTGTTTCTTGCTGGGAGATCCCTCCAAATCAAAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

261

Amino Acids

28.96

Weight (kDa)

9.39

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 197	1.1e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 193	2.3e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	97, 281
AciI	CCGC	4 cut(s)	77, 351, 536, 564
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	2 cut(s)	371, 753
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	110, 247
AcuI	CTGAAG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	2 cut(s)	311, 730
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	187, 298, 521, 606, 618
AjnI	CCWGG	1 cut(s)	724
Alw21I	GWGCWC	2 cut(s)	336, 673
Alw26I	GTCTC	2 cut(s)	507, 651
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	371, 753
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	4 cut(s)	147, 265, 443, 561
ApoI	RAATTY	2 cut(s)	110, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	185, 472
AsuNHI	GCTAGC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	336, 556
Bbv12I	GWGCWC	2 cut(s)	336, 673
BbvI	GCAGC	4 cut(s)	159, 277, 430, 548
BccI	CCATC	1 cut(s)	696
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	507, 651
BfaI	CTAG	2 cut(s)	431, 557
BfmI	CTRYAG	1 cut(s)	572
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	5 cut(s)	148, 266, 444, 536, 562
BlsI	GCNGC	5 cut(s)	149, 267, 445, 537, 563
Bme1390I	CCNGG	1 cut(s)	726
BmiI	GGNNCC	2 cut(s)	217, 665
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	567
BmtI	GCTAGC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	89, 551
BsaAI	YACGTR	2 cut(s)	141, 406
BsaJI	CCNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	394, 493
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	394, 493
BseSI	GKGCMC	2 cut(s)	336, 556
BseXI	GCAGC	4 cut(s)	159, 277, 430, 548
BseYI	CCCAGC	1 cut(s)	752
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	336, 673
BsiSI	CCGG	1 cut(s)	539
BsmAI	GTCTC	2 cut(s)	507, 651
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	336, 556, 673
Bsp143I	GATC	2 cut(s)	376, 758
BspACI	CCGC	4 cut(s)	77, 351, 536, 564
BspANI	GGCC	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	217, 665
BspMAI	CTGCAG	1 cut(s)	576
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	371, 753
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	394, 493
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	376, 758
BssNAI	GTATAC	1 cut(s)	282
Bst1107I	GTATAC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	288, 338, 645
Bst6I	CTCTTC	1 cut(s)	583
BstAFI	CTTAAG	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBAI	YACGTR	2 cut(s)	141, 406
BstC8I	GCNNGC	4 cut(s)	351, 432, 540, 631
BstDEI	CTNAG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	379, 761
BstMAI	GTCTC	2 cut(s)	507, 651
BstMBI	GATC	2 cut(s)	376, 758
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 83, 440, 677
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	572
BstSLI	GKGCMC	2 cut(s)	336, 556
BstSNI	TACGTA	1 cut(s)	406
BstV1I	GCAGC	4 cut(s)	159, 277, 430, 548
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
BstZ17I	GTATAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	284, 334, 486
Cac8I	GCNNGC	4 cut(s)	351, 432, 540, 631
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	310, 729
CviAII	CATG	2 cut(s)	317, 482
CviQI	GTAC	2 cut(s)	310, 729
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	378, 760
DpnII	GATC	2 cut(s)	376, 758
DraIII	CACNNNGTG	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	1 cut(s)	92
Eco105I	TACGTA	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	724
FaeI	CATG	2 cut(s)	320, 485
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FatI	CATG	2 cut(s)	316, 481
FauI	CCCGC	1 cut(s)	358
FblI	GTMKAC	2 cut(s)	97, 281
Fnu4HI	GCNGC	5 cut(s)	148, 266, 444, 536, 562
Fsp4HI	GCNGC	5 cut(s)	148, 266, 444, 536, 562
FspBI	CTAG	2 cut(s)	431, 557
GluI	GCNGC	5 cut(s)	148, 266, 444, 536, 562
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	2 cut(s)	320, 485
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	185, 472
Hpy166II	GTNNAC	3 cut(s)	98, 282, 334
Hpy188I	TCNGA	5 cut(s)	39, 70, 117, 472, 668
Hpy188III	TCNNGA	5 cut(s)	106, 317, 506, 530, 639
Hpy8I	GTNNAC	3 cut(s)	98, 282, 334
HpyAV	CCTTC	2 cut(s)	164, 292
HpyCH4III	ACNGT	3 cut(s)	288, 338, 645
HpyCH4IV	ACGT	3 cut(s)	140, 189, 405
HpyCH4V	TGCA	3 cut(s)	334, 574, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 83, 440, 677
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	3 cut(s)	140, 189, 405
Hsp92II	CATG	2 cut(s)	320, 485
KroI	GCCGGC	1 cut(s)	538
KroNI	GCCGGC	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	376, 758
Lsp1109I	GCAGC	4 cut(s)	159, 277, 430, 548
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	2 cut(s)	431, 557
MaeII	ACGT	3 cut(s)	140, 189, 405
MaeIII	GTNAC	2 cut(s)	154, 338
MalI	GATC	2 cut(s)	378, 760
MboI	GATC	2 cut(s)	376, 758
MboII	GAAGA	4 cut(s)	173, 176, 236, 600
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	3 cut(s)	336, 556, 673
MluCI	AATT	4 cut(s)	110, 247, 516, 695
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	45, 206, 237, 710, 773
MroNI	GCCGGC	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	134, 306, 345
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	4 cut(s)	11, 83, 440, 677
NaeI	GCCGGC	1 cut(s)	540
NdeII	GATC	2 cut(s)	376, 758
NgoMIV	GCCGGC	1 cut(s)	538
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	2 cut(s)	320, 485
NlaIV	GGNNCC	2 cut(s)	217, 665
NmuCI	GTSAC	2 cut(s)	154, 338
PagI	TCATGA	1 cut(s)	316
PctI	GAATGC	1 cut(s)	525
PdiI	GCCGGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	149, 267, 445, 537, 563
Ppu21I	YACGTR	2 cut(s)	141, 406
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	217, 665
PstI	CTGCAG	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	758
RsaI	GTAC	2 cut(s)	311, 730
RsaNI	GTAC	2 cut(s)	310, 729
SalI	GTCGAC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	134, 306, 345
SatI	GCNGC	5 cut(s)	148, 266, 444, 536, 562
Sau3AI	GATC	2 cut(s)	376, 758
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	3 cut(s)	336, 556, 673
SetI	ASST	4 cut(s)	143, 175, 192, 408
SfaNI	GCATC	1 cut(s)	567
SfcI	CTRYAG	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	104, 305, 530
SmoI	CTYRAG	3 cut(s)	104, 305, 530
SnaBI	TACGTA	1 cut(s)	406
Sse9I	AATT	4 cut(s)	110, 247, 516, 695
SsiI	CCGC	4 cut(s)	77, 351, 536, 564
SspMI	CTAG	2 cut(s)	431, 557
StyD4I	CCNGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	288, 338, 645
TaiI	ACGT	3 cut(s)	143, 192, 408
TaqI	TCGA	2 cut(s)	97, 252
TasI	AATT	4 cut(s)	110, 247, 516, 695
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	134, 306, 345
Tru9I	TTAA	3 cut(s)	134, 306, 345
TscAI	CASTG	3 cut(s)	291, 341, 493
TseFI	GTSAC	2 cut(s)	154, 338
TseI	GCWGC	4 cut(s)	147, 265, 443, 561
Tsp45I	GTSAC	2 cut(s)	154, 338
TspDTI	ATGAA	2 cut(s)	183, 305
TspRI	CASTG	3 cut(s)	291, 341, 493
Vha464I	CTTAAG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	110, 247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XmiI	GTMKAC	2 cut(s)	97, 281
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	431, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.