Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

17712230 .. 17713237

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTTCGAGTTCAAGGCCAAAGAAAGAACAGAGCTTGTCGGTTGCTGGCCGTGAGTGGGTTCGAGGCCGGGTACTCGGAAAAGGGGGATTTGGGTCGGTGTATTTGGGTTGGGTAAAAAAACCCAATTTGAGAGCCGATGTTTTGCCCTCAATTTTCGCGGTGAAGTCAACATTATACTGTGATGCGCTTGAGTTGGTGAGGGAAAATTCACTTCTTGACACGTTTAGCAACTGTCCGTTTATCATCCATCGCTATGGAGAGGATGTGACGGCTGGTGTTGATGGCAATAAGGTTTTCAATATGTTCATGGAATATGCCGATGGAGGAACAATGAGGGATTTGATTAACAAGTCTGGGGGGTTGCCTGAATTTCAAGTAAGGAAGTATACAGAGGCAATTTTGAAGGGGGTTAAGCACATTCATGAAATGGGTTATGTGCATTGTGATTTGAAGCCTGAGAATATATTACTTGTCTCCAAAACTGATGCTGTTGGTTCTGAATTTGTGCCCAAAATTGGAGACTTGGGTCTGGCAAAGAGGATTATAGAGAAGCGCTCTGGAGGCACTACACTGTATTGGTCTCCAGAAACTGTGCTTCAAAATATTCAGCTGCAACCTTCTGATATTTGGGCATTGGGCTGTATTGTGCTTATGATGTTGACTGGGAGGAAGCCAAGGGATTTGAAAGCCGGGGCGAGACCTTGGGACCTAATGCTTCAGATTGCTTCAAAATCTCCCACTATTCCTGTTTGGTTATCAGAAGAGGCTAAAGATTTCTTGGGAAAGTGCTTTGTGTGGAGCCCTTCTGAGAGGTTCACTGCTGCTAAGCTATTGAATCATCCATTTGTGACTAATCTGGATCCAGTAAAGGAACTCTCTTCGGTGTCTTCGTCGCCTTCTGAGCAGCAGATTCTTCCTTTGGGATTCAAGACCTGTCATTCCAAATCGAACCGCTGTTTGCCAAAAGCCATCGGCTTTCCCTATAATTGGTGCTGCTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

336

Amino Acids

37.2

Weight (kDa)

9.03

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	161
AciI	CCGC	2 cut(s)	161, 955
AclWI	GGATC	2 cut(s)	857, 870
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	208, 371, 503
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	75
AfeI	AGCGCT	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	58, 518, 990
AflIII	ACRYGT	1 cut(s)	222
AluBI	AGCT	4 cut(s)	36, 613, 832, 1004
AluI	AGCT	4 cut(s)	36, 613, 832, 1004
Alw26I	GTCTC	4 cut(s)	481, 516, 588, 694
AlwI	GGATC	2 cut(s)	857, 870
AlwNI	CAGNNNCTG	1 cut(s)	593
Aor51HI	AGCGCT	1 cut(s)	557
AoxI	GGCC	3 cut(s)	17, 49, 67
ApeKI	GCWGC	4 cut(s)	613, 824, 907, 996
ApoI	RAATTY	3 cut(s)	208, 371, 503
AspLEI	GCGC	2 cut(s)	190, 558
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	2 cut(s)	71, 694
AsuHPI	GGTGA	2 cut(s)	175, 211
AvaII	GGWCC	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	882
BbvI	GCAGC	4 cut(s)	600, 811, 919, 983
BccI	CCATC	4 cut(s)	258, 278, 317, 980
BceAI	ACGGC	2 cut(s)	36, 288
BcnI	CCSGG	2 cut(s)	71, 694
BcoDI	GTCTC	4 cut(s)	481, 516, 588, 694
BfoI	RGCGCY	1 cut(s)	559
BisI	GCNGC	4 cut(s)	614, 825, 908, 997
BlpI	GCTNAGC	2 cut(s)	828, 1000
BlsI	GCNGC	4 cut(s)	615, 826, 909, 998
Bme1390I	CCNGG	2 cut(s)	71, 694
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	3 cut(s)	710, 803, 864
BmrFI	CCNGG	2 cut(s)	71, 694
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	175, 478
BmuI	ACTGGG	1 cut(s)	675
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	882
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	2 cut(s)	570, 582
Bpu1102I	GCTNAGC	2 cut(s)	828, 1000
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	71, 694
BsaI	GGTCTC	2 cut(s)	588, 694
BsaJI	CCNNGG	3 cut(s)	677, 693, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 518, 990
Bse1I	ACTGG	2 cut(s)	670, 866
BseDI	CCNNGG	3 cut(s)	677, 693, 704
BseGI	GGATG	3 cut(s)	246, 271, 841
BseLI	CCNNNNNNNGG	3 cut(s)	58, 518, 990
BseMII	CTCAG	3 cut(s)	450, 801, 894
BseNI	ACTGG	2 cut(s)	670, 866
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	4 cut(s)	600, 811, 919, 983
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	19, 51, 69
BsiSI	CCGG	2 cut(s)	70, 693
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	3 cut(s)	58, 518, 990
BsmAI	GTCTC	4 cut(s)	481, 516, 588, 694
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	3 cut(s)	19, 51, 69
Bso31I	GGTCTC	2 cut(s)	588, 694
Bsp1286I	GDGCHC	2 cut(s)	513, 806
Bsp143I	GATC	1 cut(s)	862
Bsp1720I	GCTNAGC	2 cut(s)	828, 1000
BspACI	CCGC	2 cut(s)	161, 955
BspANI	GGCC	3 cut(s)	19, 51, 69
BspCNI	CTCAG	3 cut(s)	451, 802, 895
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	710, 803, 864
BspPI	GGATC	2 cut(s)	857, 870
BspTNI	GGTCTC	2 cut(s)	588, 694
BsrI	ACTGG	2 cut(s)	670, 866
BssECI	CCNNGG	3 cut(s)	677, 693, 704
BssMI	GATC	1 cut(s)	862
BssNAI	GTATAC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	677, 704
Bst1107I	GTATAC	1 cut(s)	390
Bst4CI	ACNGT	4 cut(s)	182, 236, 576, 595
Bst6I	CTCTTC	2 cut(s)	759, 886
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	459, 810, 828, 903, 1000
BstF5I	GGATG	3 cut(s)	246, 271, 841
BstFNI	CGCG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	559
BstHHI	GCGC	2 cut(s)	190, 558
BstKTI	GATC	1 cut(s)	865
BstMAI	GTCTC	4 cut(s)	481, 516, 588, 694
BstMBI	GATC	1 cut(s)	862
BstMWI	GCNNNNNNNGC	2 cut(s)	564, 904
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	69, 692
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	600, 811, 919, 983
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	862
BstZ17I	GTATAC	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	19, 51, 69
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	246, 271, 841
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	572, 819
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	2 cut(s)	190, 558
Cfr13I	GGNCC	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	310, 425
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	5 cut(s)	459, 810, 828, 903, 1000
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	759, 886
EarI	CTCTTC	2 cut(s)	759, 886
Eco130I	CCWWGG	2 cut(s)	677, 704
Eco24I	GRGCYC	1 cut(s)	806
Eco31I	GGTCTC	2 cut(s)	588, 694
Eco47I	GGWCC	1 cut(s)	709
Eco47III	AGCGCT	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	677, 704
EcoT38I	GRGCYC	1 cut(s)	806
ErhI	CCWWGG	2 cut(s)	677, 704
FaeI	CATG	2 cut(s)	313, 428
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	2 cut(s)	309, 424
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	614, 825, 908, 997
FokI	GGATG	3 cut(s)	233, 278, 828
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	4 cut(s)	614, 825, 908, 997
GlaI	GCGC	2 cut(s)	189, 557
GluI	GCNGC	4 cut(s)	614, 825, 908, 997
GsuI	CTGGAG	2 cut(s)	570, 582
HaeII	RGCGCY	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	19, 51, 69
HapII	CCGG	2 cut(s)	70, 693
HhaI	GCGC	2 cut(s)	190, 558
Hin1II	CATG	2 cut(s)	313, 428
Hin6I	GCGC	2 cut(s)	188, 556
HinP1I	GCGC	2 cut(s)	188, 556
HincII	GTYRAC	2 cut(s)	171, 663
HindII	GTYRAC	2 cut(s)	171, 663
HinfI	GANTC	3 cut(s)	838, 913, 927
HpaII	CCGG	2 cut(s)	70, 693
HphI	GGTGA	2 cut(s)	175, 211
Hpy166II	GTNNAC	4 cut(s)	171, 390, 663, 819
Hpy188I	TCNGA	7 cut(s)	80, 502, 625, 723, 763, 811, 904
Hpy188III	TCNNGA	6 cut(s)	218, 425, 561, 587, 860, 931
Hpy8I	GTNNAC	4 cut(s)	171, 390, 663, 819
Hpy99I	CGWCG	1 cut(s)	898
HpyAV	CCTTC	4 cut(s)	400, 630, 816, 909
HpyCH4III	ACNGT	4 cut(s)	182, 236, 576, 595
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	442, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	564, 904
HpyF3I	CTNAG	5 cut(s)	459, 810, 828, 903, 1000
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	313, 428
HspAI	GCGC	2 cut(s)	188, 556
Kzo9I	GATC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	4 cut(s)	600, 811, 919, 983
LweI	GCATC	2 cut(s)	175, 478
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	268, 850
MalI	GATC	1 cut(s)	864
MboI	GATC	1 cut(s)	862
MboII	GAAGA	4 cut(s)	776, 873, 882, 908
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	513, 806
MluCI	AATT	8 cut(s)	127, 153, 208, 371, 399, 503, 516, 988
MseI	TTAA	2 cut(s)	348, 414
MslI	CAYNNNNRTG	2 cut(s)	255, 423
MspA1I	CMGCKG	2 cut(s)	613, 957
MspI	CCGG	2 cut(s)	70, 693
MspR9I	CCNGG	2 cut(s)	71, 694
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	564, 904
NciI	CCSGG	2 cut(s)	71, 694
NdeII	GATC	1 cut(s)	862
NlaIII	CATG	2 cut(s)	313, 428
NlaIV	GGNNCC	3 cut(s)	710, 803, 864
NmuCI	GTSAC	2 cut(s)	268, 850
PagI	TCATGA	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PfeI	GAWTC	3 cut(s)	838, 913, 927
PkrI	GCNGC	4 cut(s)	615, 826, 909, 998
PpuMI	RGGWCCY	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	710, 803, 864
PspPI	GGNCC	1 cut(s)	709
PspPPI	RGGWCCY	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	255, 423
SaqAI	TTAA	2 cut(s)	348, 414
SatI	GCNGC	4 cut(s)	614, 825, 908, 997
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	71, 694
SduI	GDGCHC	2 cut(s)	513, 806
SfaNI	GCATC	2 cut(s)	175, 478
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	255, 423
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	8 cut(s)	127, 153, 208, 371, 399, 503, 516, 988
SsiI	CCGC	2 cut(s)	161, 955
SspI	AATATT	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	69, 692
StyI	CCWWGG	2 cut(s)	677, 704
TaaI	ACNGT	4 cut(s)	182, 236, 576, 595
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	8, 64, 950
TasI	AATT	8 cut(s)	127, 153, 208, 371, 399, 503, 516, 988
TfiI	GAWTC	3 cut(s)	838, 913, 927
Tru1I	TTAA	2 cut(s)	348, 414
Tru9I	TTAA	2 cut(s)	348, 414
TscAI	CASTG	2 cut(s)	579, 826
TseFI	GTSAC	2 cut(s)	268, 850
TseI	GCWGC	4 cut(s)	613, 824, 907, 996
Tsp45I	GTSAC	2 cut(s)	268, 850
TspDTI	ATGAA	3 cut(s)	298, 413, 441
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	579, 826
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	3 cut(s)	208, 371, 503
XmiI	GTMKAC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.