Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

65061287 .. 65061880

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTCGTCCGACGAAAACAAGTAAGAAACTGCCTCCGATTATGGACGTGAAGTCTGCAGACTTGTCGGAATCGGCGGACTTGGCTAAAGAAAGTCGACTTCTCAAGAAATTTCGGAATTGCCCTTCTATCTTAAACACGTATGGCAGTGATGTGACGGAAGAAGATGAAGGTGAGAAGTTGTTCAACGTTTTCTTGGAGTATGCCCAAAGAGGAACCATAGAAGATTGTATAAAGACACCGAGGAATTTCGAGTTGTTTGAGCAGCACGTAAGGAAGTATACACTGTCGGTTTTGAAGGGGCTTAAGTACATTCATGACAAGGGATTTGTGCATTGTGACATTAAGCGCGCAAATATATTCCTTGTAAGTAATGATCCTAAGGATACTGGGTTTGGCTCTTACGTAGCGAAAATCGGGGATTTTAGGCTAGCGAAAAGGGCGACAAAAAACAACGTGGTGAAGCGTTCTGAACAAATACATGGCACTGGATTGTATATGTCTCCAAAAGTATCAATTCAAAACATTCTTGAGCCGTCGGTTGACATTTGGGCACTAGGCTGCAGTGTTCTGCAGATGTTGACTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

197

Amino Acids

22.23

Weight (kDa)

9.18

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 197	7.5e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 195	1.8e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	97, 281
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	77
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	110, 247
AfaI	GTAC	1 cut(s)	311
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	187, 298, 521
AhdI	GACNNNNNGTC	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	265, 561
ApoI	RAATTY	2 cut(s)	110, 247
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	351, 353
AsuHPI	GGTGA	2 cut(s)	185, 472
AsuNHI	GCTAGC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	277, 548
BceAI	ACGGC	1 cut(s)	520
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	431, 557
BfmI	CTRYAG	3 cut(s)	57, 562, 572
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	2 cut(s)	266, 562
BlsI	GCNGC	2 cut(s)	267, 563
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	217
BmrI	ACTGGG	2 cut(s)	399, 594
BmtI	GCTAGC	1 cut(s)	434
BmuI	ACTGGG	2 cut(s)	399, 594
BpuEI	CTTGAG	2 cut(s)	89, 551
BsaAI	YACGTR	3 cut(s)	141, 271, 406
BsaJI	CCNNGG	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	394, 493, 589
Bse21I	CCTNAGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	242
BseNI	ACTGG	3 cut(s)	394, 493, 589
BsePI	GCGCGC	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	277, 548
Bsh1236I	CGCG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	3 cut(s)	61, 566, 576
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	394, 493, 589
BssECI	CCNNGG	1 cut(s)	242
BssHII	GCGCGC	1 cut(s)	349
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	1 cut(s)	282
Bst1107I	GTATAC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	3 cut(s)	141, 271, 406
BstC8I	GCNNGC	2 cut(s)	351, 432
BstDEI	CTNAG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	351, 353
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 440
BstSFI	CTRYAG	3 cut(s)	57, 562, 572
BstSLI	GKGCMC	1 cut(s)	556
BstSNI	TACGTA	1 cut(s)	406
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	277, 548
BstZ17I	GTATAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	49
BtsI	GCAGTG	2 cut(s)	154, 571
BtsIMutI	CAGTG	4 cut(s)	154, 284, 486, 571
Cac8I	GCNNGC	2 cut(s)	351, 432
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	351, 353
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	317, 482
CviJI	RGCY	7 cut(s)	5, 86, 304, 399, 430, 535, 561
CviKI_1	RGCY	7 cut(s)	5, 86, 304, 399, 430, 535, 561
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	92
Eco105I	TACGTA	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	381
FaeI	CATG	2 cut(s)	320, 485
FatI	CATG	2 cut(s)	316, 481
FblI	GTMKAC	2 cut(s)	97, 281
Fnu4HI	GCNGC	2 cut(s)	266, 562
Fsp4HI	GCNGC	2 cut(s)	266, 562
FspBI	CTAG	2 cut(s)	431, 557
GlaI	GCGC	2 cut(s)	350, 352
GluI	GCNGC	2 cut(s)	266, 562
HhaI	GCGC	2 cut(s)	351, 353
Hin1II	CATG	2 cut(s)	320, 485
Hin6I	GCGC	2 cut(s)	349, 351
HinP1I	GCGC	2 cut(s)	349, 351
HincII	GTYRAC	3 cut(s)	98, 544, 582
HindII	GTYRAC	3 cut(s)	98, 544, 582
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	2 cut(s)	185, 472
Hpy166II	GTNNAC	4 cut(s)	98, 282, 544, 582
Hpy188I	TCNGA	5 cut(s)	12, 39, 70, 117, 472
Hpy188III	TCNNGA	3 cut(s)	106, 317, 530
Hpy8I	GTNNAC	4 cut(s)	98, 282, 544, 582
Hpy99I	CGWCG	2 cut(s)	16, 541
HpyAV	CCTTC	3 cut(s)	135, 164, 292
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4IV	ACGT	6 cut(s)	48, 140, 189, 270, 405, 456
HpyCH4V	TGCA	4 cut(s)	59, 334, 564, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 440
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	6 cut(s)	48, 140, 189, 270, 405, 456
Hsp92II	CATG	2 cut(s)	320, 485
HspAI	GCGC	2 cut(s)	349, 351
Kzo9I	GATC	1 cut(s)	376
LpnPI	CCDG	3 cut(s)	375, 474, 570
Lsp1109I	GCAGC	2 cut(s)	277, 548
MaeI	CTAG	2 cut(s)	431, 557
MaeII	ACGT	6 cut(s)	48, 140, 189, 270, 405, 456
MaeIII	GTNAC	2 cut(s)	154, 338
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	173, 176, 236
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	4 cut(s)	110, 118, 247, 516
MmeI	TCCRAC	2 cut(s)	35, 48
MnlI	CCTC	3 cut(s)	45, 206, 237
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	134, 306, 345
MspCI	CTTAAG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	83, 440
NdeII	GATC	1 cut(s)	376
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	2 cut(s)	320, 485
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	154, 338
PagI	TCATGA	1 cut(s)	316
PauI	GCGCGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	267, 563
Ppu21I	YACGTR	3 cut(s)	141, 271, 406
Psp1406I	AACGTT	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	217
PstI	CTGCAG	3 cut(s)	61, 566, 576
PteI	GCGCGC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	134, 306, 345
SatI	GCNGC	2 cut(s)	266, 562
Sau3AI	GATC	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	7 cut(s)	51, 143, 175, 192, 273, 408, 459
SfcI	CTRYAG	3 cut(s)	57, 562, 572
SmlI	CTYRAG	3 cut(s)	104, 305, 530
SmoI	CTYRAG	3 cut(s)	104, 305, 530
SnaBI	TACGTA	1 cut(s)	406
Sse9I	AATT	4 cut(s)	110, 118, 247, 516
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	431, 557
TaaI	ACNGT	1 cut(s)	288
TaiI	ACGT	6 cut(s)	51, 143, 192, 273, 408, 459
TaqI	TCGA	2 cut(s)	97, 252
TasI	AATT	4 cut(s)	110, 118, 247, 516
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	134, 306, 345
Tru9I	TTAA	3 cut(s)	134, 306, 345
TscAI	CASTG	4 cut(s)	154, 291, 493, 571
TseFI	GTSAC	2 cut(s)	154, 338
TseI	GCWGC	2 cut(s)	265, 561
Tsp45I	GTSAC	2 cut(s)	154, 338
TspDTI	ATGAA	2 cut(s)	183, 305
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	4 cut(s)	154, 291, 493, 571
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	110, 247
XmiI	GTMKAC	2 cut(s)	97, 281
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	431, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.