Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Forward (+)

52655405 .. 52657688

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAGAAACAATATGCGCAGGCAGGTTGCTCTGATGAGGCAGTCCCTCTTTACTCAGGGATATCTGGATGAACAGTTTGTTCAGTTGGAGGAGCTGCAAGATGATACTAATCCAAATTTTGTGGAGGAAATTGCTACATTGTACTACCGTGATTCATGCAGATCACTCCAAACCATAGAGCAGGCATTAGAGAAAACCCCTCACGATTTCAATAAGTTGGACAATCATATGCATCAATTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCTGAATGCCAACAGTTCAGAGAATATTGTAGGGCAGGAAATGGAGAAGGATGCATGAGAACTTTCCAACTATTGAAGAAAGAACATGCAACTCTGAAAAAGAAGCTTGAGGCTTATTTTCAGATGGCAAGGCAAGCTGGGCCAATTGAGACTGCAAGTCGTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

150

Amino Acids

17.5

Weight (kDa)

8.67

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 127	6.6e-14	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	214, 244, 358
AhdI	GACNNNNNGTC	1 cut(s)	438
AluBI	AGCT	5 cut(s)	97, 255, 284, 388, 419
AluI	AGCT	5 cut(s)	97, 255, 284, 388, 419
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	3 cut(s)	244, 270, 323
BpuEI	CTTGAG	2 cut(s)	241, 410
BsaBI	GATNNNNATC	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	2 cut(s)	76, 338
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	31, 429
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	31, 429
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	16
BssMI	GATC	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	78, 152, 297
BstC8I	GCNNGC	3 cut(s)	23, 186, 417
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	76, 338
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 421
BstNSI	RCATGY	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	76, 338
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	23, 186, 417
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	159, 337, 368
CviJI	RGCY	8 cut(s)	97, 255, 269, 284, 388, 395, 419, 424
CviKI_1	RGCY	8 cut(s)	97, 255, 269, 284, 388, 395, 419, 424
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
DriI	GACNNNNNGTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	65
EcoT22I	ATGCAT	2 cut(s)	237, 338
FaeI	CATG	3 cut(s)	162, 340, 371
FaiI	YATR	7 cut(s)	17, 160, 179, 231, 233, 338, 369
FaqI	GGGAC	2 cut(s)	31, 429
FatI	CATG	3 cut(s)	158, 336, 367
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	2 cut(s)	83, 345
Fsp4HI	GCNGC	1 cut(s)	98
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	162, 340, 371
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	36, 266, 302, 378, 405
Hpy188III	TCNNGA	2 cut(s)	68, 206
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	78, 152, 297
HpyCH4V	TGCA	6 cut(s)	100, 162, 235, 336, 371, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 421
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	162, 340, 371
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	94, 266
LpnPI	CCDG	7 cut(s)	7, 11, 44, 53, 170, 303, 405
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	3 cut(s)	244, 270, 323
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	4 cut(s)	118, 132, 239, 426
MmeI	TCCRAC	3 cut(s)	69, 201, 373
MnlI	CCTC	6 cut(s)	33, 59, 85, 121, 213, 385
Mph1103I	ATGCAT	2 cut(s)	237, 338
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	416, 421
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	162, 340, 371
NlaIV	GGNNCC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	2 cut(s)	237, 338
NspI	RCATGY	1 cut(s)	371
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	422
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	422
SetI	ASST	7 cut(s)	30, 99, 257, 279, 286, 390, 421
SfaNI	GCATC	3 cut(s)	244, 270, 323
SmlI	CTYRAG	2 cut(s)	256, 389
SmoI	CTYRAG	2 cut(s)	256, 389
Sse9I	AATT	4 cut(s)	118, 132, 239, 426
SspI	AATATT	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	78, 152, 297
TasI	AATT	4 cut(s)	118, 132, 239, 426
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	87, 147
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	371
Zsp2I	ATGCAT	2 cut(s)	237, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.