Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

47159850 .. 47160926

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGTTTGAAAAGGAAAAGAAGCAGTGAGTTGGGTGAGTGGGTTTTGGGAGATTTGATTGGCAAGGGGGGTTTTGGGAGTGTCTATAAGGCCTATCCACTTAAGTTAGAGAAAGGGTCTCCTGCTATCATGGCCGTTAAGGTCGCTGAGGTTTCTGATCCAAACAAGGTTGATGCTTTATTCACCGAGGCCAAACTTCTCTCTCAGTTTCAGGACTGCCCTTTTGTTATCAACTCTTTTGGAGAACAGTGGACATATAAGTCTCATCATAATTCTTTCTCTTTCAATCTGCTATTAGAATTTGCGGCCGGAGGCACTATAAGAGATAGGATTCAGAAATCCGCATCCGGCTTGTCCGAATGTGAGATAAAAGAGTTCACCAGGTCAGTTCTTAGTGGTCTCCAGTGGATTCATGATAAAGGTTATGTGCATTGCGACATAAAGCCCGATAACATTCTTCTTGTGCACGACATGACTTCTCATGTCGATTTTGTGGCTAAGATAGGAGACTTTGGATTGACAAAGAGCGCTCAAAATGAGTATTCTCGCCAAGGCACCGCAAGTTATTTGCCTCCTGAAACTGTTATCAGTAACATTCAAGGGAAGCCATCAGACATTTGGGCACTAGGATGTTTAGTTCTAGAGATGTTGACCGGAACCTTGTGGCCTTGCAAGACAAGTGAGGACTTAGGCGGTTGGGTTTCAAATCCAATTATTCCTTCACACTTGTCCGAGGAGGCCAAGGACTTTTTGGCAAAGTGTCTGGATATAGATGCTTCCAAGAGATTTACGGCTGAGAGGCTCTTGACTCACTCATTTCTTATGAGTAAACAGAGCATTGAACAAGTAGCTAAAGTGCCCGCATTGTCACAATCTCAGCATTGTTATAATCGGTTGCCCAGTTTTATACCCTTAGGCGACTCTAGCTCCCAAGAGGCACAAAAGAACAAAGAGGGTTCTGGTTTATATGATAATACCATTTTTCCTTTGGCACTCATGTCAAGACCTGCTAGACCTGTGGTTGCAGACCCATGGTGCATCAAGCCAACAACTTTTGCTGTAATGGGCGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

358

Amino Acids

39.42

Weight (kDa)

6.51

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 274	1.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 269	2.6e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AasI	GACNNNNNNGTC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	5 cut(s)	305, 342, 558, 693, 861
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	2 cut(s)	132, 306
AcsI	RAATTY	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	529
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	10, 286, 599, 705, 842
AjnI	CCWGG	1 cut(s)	380
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	2 cut(s)	851, 927
AluI	AGCT	2 cut(s)	851, 927
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	4 cut(s)	123, 267, 404, 501
Alw44I	GTGCAC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	6 cut(s)	90, 132, 189, 306, 665, 738
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	2 cut(s)	530, 1070
AsuHPI	GGTGA	3 cut(s)	47, 175, 370
AxyI	CCTNAGG	1 cut(s)	913
BaeGI	GKGCMC	3 cut(s)	468, 625, 861
BanI	GGYRCC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	2 cut(s)	119, 807
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	123, 267, 404, 501
BfaI	CTAG	4 cut(s)	626, 641, 924, 1011
BfoI	RGCGCY	2 cut(s)	531, 1071
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	1015
BisI	GCNGC	2 cut(s)	306, 1071
BlsI	GCNGC	2 cut(s)	307, 1072
Bme1390I	CCNGG	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	556, 658
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	4 cut(s)	163, 353, 763, 1047
BmuI	ACTGGG	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	123, 404
BsaJI	CCNNGG	5 cut(s)	186, 550, 732, 741, 1031
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bse1I	ACTGG	2 cut(s)	403, 900
Bse21I	CCTNAGG	1 cut(s)	913
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	5 cut(s)	186, 550, 732, 741, 1031
BseGI	GGATG	2 cut(s)	344, 635
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	138, 218, 786, 890
BseNI	ACTGG	2 cut(s)	403, 900
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	3 cut(s)	468, 625, 861
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	1057
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	92, 134, 191, 308, 667, 740
BshNI	GGYRCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	3 cut(s)	309, 348, 654
BsmAI	GTCTC	4 cut(s)	123, 267, 404, 501
BsnI	GGCC	6 cut(s)	92, 134, 191, 308, 667, 740
Bso31I	GGTCTC	2 cut(s)	123, 404
Bsp1286I	GDGCHC	3 cut(s)	468, 625, 861
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	1031
BspACI	CCGC	5 cut(s)	305, 342, 558, 693, 861
BspANI	GGCC	6 cut(s)	92, 134, 191, 308, 667, 740
BspCNI	CTCAG	4 cut(s)	139, 217, 787, 889
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	556, 658
BspMI	ACCTGC	1 cut(s)	1015
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	123, 404
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	403, 900
BssECI	CCNNGG	5 cut(s)	186, 550, 732, 741, 1031
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	3 cut(s)	550, 741, 1031
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	249, 583
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	8 cut(s)	147, 204, 392, 498, 688, 795, 876, 913
BstDSI	CCRYGG	1 cut(s)	1031
BstF5I	GGATG	2 cut(s)	344, 635
BstH2I	RGCGCY	2 cut(s)	531, 1071
BstHHI	GCGC	2 cut(s)	530, 1070
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	4 cut(s)	123, 267, 404, 501
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 924
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstSLI	GKGCMC	3 cut(s)	468, 625, 861
BstV1I	GCAGC	1 cut(s)	1057
BstZI	CGGCCG	1 cut(s)	306
Bsu36I	CCTNAGG	1 cut(s)	913
BsuRI	GGCC	6 cut(s)	92, 134, 191, 308, 667, 740
BtgI	CCRYGG	1 cut(s)	1031
BtsCI	GGATG	2 cut(s)	344, 635
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	31, 254, 410
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	1 cut(s)	861
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	530, 1070
CsiI	ACCWGGT	1 cut(s)	380
CviAII	CATG	6 cut(s)	130, 413, 472, 482, 997, 1032
DdeI	CTNAG	8 cut(s)	147, 204, 392, 498, 688, 795, 876, 913
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	2 cut(s)	132, 306
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	550, 741, 1031
Eco147I	AGGCCT	1 cut(s)	92
Eco31I	GGTCTC	2 cut(s)	123, 404
Eco47III	AGCGCT	1 cut(s)	529
Eco52I	CGGCCG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	380
EcoT14I	CCWWGG	3 cut(s)	550, 741, 1031
ErhI	CCWWGG	3 cut(s)	550, 741, 1031
FaeI	CATG	6 cut(s)	133, 416, 475, 485, 1000, 1035
FatI	CATG	6 cut(s)	129, 412, 471, 481, 996, 1031
FauI	CCCGC	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	306, 1071
FokI	GGATG	2 cut(s)	331, 642
Fsp4HI	GCNGC	2 cut(s)	306, 1071
FspBI	CTAG	4 cut(s)	626, 641, 924, 1011
GlaI	GCGC	2 cut(s)	529, 1069
GluI	GCNGC	2 cut(s)	306, 1071
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	531, 1071
HaeIII	GGCC	6 cut(s)	92, 134, 191, 308, 667, 740
HapII	CCGG	3 cut(s)	309, 348, 654
HhaI	GCGC	2 cut(s)	530, 1070
Hin1II	CATG	6 cut(s)	133, 416, 475, 485, 1000, 1035
Hin6I	GCGC	2 cut(s)	528, 1068
HinP1I	GCGC	2 cut(s)	528, 1068
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	4 cut(s)	331, 409, 808, 920
HpaII	CCGG	3 cut(s)	309, 348, 654
HphI	GGTGA	3 cut(s)	47, 175, 370
Hpy166II	GTNNAC	5 cut(s)	252, 378, 466, 651, 830
Hpy188I	TCNGA	5 cut(s)	157, 336, 358, 613, 733
Hpy188III	TCNNGA	7 cut(s)	212, 413, 575, 641, 764, 805, 1002
Hpy8I	GTNNAC	5 cut(s)	252, 378, 466, 651, 830
HpyAV	CCTTC	1 cut(s)	729
HpyCH4III	ACNGT	2 cut(s)	249, 583
HpyCH4V	TGCA	6 cut(s)	430, 466, 672, 1025, 1038, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 924
HpyF3I	CTNAG	8 cut(s)	147, 204, 392, 498, 688, 795, 876, 913
Hsp92II	CATG	6 cut(s)	133, 416, 475, 485, 1000, 1035
HspAI	GCGC	2 cut(s)	528, 1068
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	932
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	4 cut(s)	163, 353, 763, 1047
MabI	ACCWGGT	1 cut(s)	380
MaeI	CTAG	4 cut(s)	626, 641, 924, 1011
MaeIII	GTNAC	2 cut(s)	590, 867
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	449
MhlI	GDGCHC	3 cut(s)	468, 625, 861
MluCI	AATT	3 cut(s)	271, 299, 711
MlyI	GAGTC	2 cut(s)	802, 914
MseI	TTAA	2 cut(s)	102, 138
MslI	CAYNNNNRTG	1 cut(s)	628
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	3 cut(s)	309, 348, 654
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	131, 924
NcoI	CCATGG	1 cut(s)	1031
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	6 cut(s)	133, 416, 475, 485, 1000, 1035
NlaIV	GGNNCC	2 cut(s)	556, 658
NmuCI	GTSAC	1 cut(s)	867
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	331, 409
PkrI	GCNGC	2 cut(s)	307, 1072
PleI	GAGTC	2 cut(s)	802, 914
PpsI	GAGTC	2 cut(s)	802, 914
PsiI	TTATAA	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	556, 658
RseI	CAYNNNNRTG	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	102, 138
SatI	GCNGC	2 cut(s)	306, 1071
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	802, 914
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	3 cut(s)	468, 625, 861
SexAI	ACCWGGT	1 cut(s)	380
SfaNI	GCATC	4 cut(s)	163, 353, 763, 1047
SmiMI	CAYNNNNRTG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	271, 299, 711
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	5 cut(s)	305, 342, 558, 693, 861
SspMI	CTAG	4 cut(s)	626, 641, 924, 1011
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	3 cut(s)	550, 741, 1031
TaaI	ACNGT	2 cut(s)	249, 583
TaqI	TCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	271, 299, 711
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	331, 409
Tru1I	TTAA	2 cut(s)	102, 138
Tru9I	TTAA	2 cut(s)	102, 138
TscAI	CASTG	3 cut(s)	31, 254, 410
TseFI	GTSAC	1 cut(s)	867
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	31, 254, 410
Vha464I	CTTAAG	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	3 cut(s)	615, 748, 985
XspI	CTAG	4 cut(s)	626, 641, 924, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.