Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

32318072 .. 32321906

Gene Structure 3835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCCGTTAAGGTCGCTGAGGTTTCTGATCCAAAAAAGGTTGATGCTTTATTCACCGAGGCCAAACTTCTCTCTCAGTTTCAGGACTGCCCTTTTGTTATCAACTCTTTTGGAGAACAGTGGACTTATAAGTCTCATCATAATTCTTTCTCTTTCAATCTGCTATTAGAATTTGCGGCCGGAGGCACTATAAGAGATAGGATTCAGAAATCCGCATCCGGCTTGTCCGAATGTGAGATAAAAGAGTTCACCAAGTCAGTTCTTAGTGGTCTCCAGTGCATTCATGACAAAGGTTATGTGCATTGCGACATAAAGCCCGATAACATTCTTCTTGTGCACGACATGACTTCTCATGTCGATTTTGTGGCTAAGATAGGAGACTTTGGATTGACAAAGAGCGCTCAAAATGAGTATTCTCGCCAAGGCACCGCAAGCTATTTGCCTCCTGAAACTGTTATCAGTAACATTCAAGGGAAGCCATCAGACATTTGGGCACTAGGATGTTTAGTTCTAGAGATGCTGACTGGAACCTTGTGGCCTTGCAAGACAAGTGAGGACTTAGGCGGTTGGGTTTCAAATCCAATTATTCCTTCACACTTGTCCGAGGAGGCCAAGGATTTTTTGGCAAAGTGTCTGGATATAGATGCTTCCAAGAGATTTACGGCTGAGAGGCTCTTGACTCACTCATTTCTTATGACTTTTGAAGCTCTCCAATCCCTGACACCTGTATATGGGGTTTTGTCTCCTAATGGCCAACTCAGTGAAGTCCGCAAATTTCTTGATCTCAGCACTGAATCCAAGTGGATCTGCATTTGGAGTTTGAACCTACCCCAAAAGATTAGAAATTTTTTTATGGCTGCCATCTCAGTATGTGATCGCAAAAAGGGGAAGTCTGGAGTAGTGGTGCGAGATGAAGAAGGAAGGCTCAAACTATGTAATCCTTCAGTTCAAGGCTTCAAGCAATCGAAAACCCTTGCATATGGTCTGACTGAAATTAGCTGGAGTGAAAACTCAAACCAGTGGAGTTGGAGAGCTATGCAGCCAATGTCATTTGGGCTCTCCAATAAAATTGGCTGCATTACTCCCCAACTCCACTGCTTTGAAGTTTTCACTCCAGCTAATTTAATTTATAAGATTGGCTGCATTGCTCACCAATCTGTCTTAAGACAGATATGGAAGGGGCAAATTTCAATAAGATTGGATCTCGTGATGCCAGAGTTCCGTAGCTGTTACATGGAGAAAGATCGCTCCAGATTGCAAACCAAGCTGCACTCATTCAGTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

429

Amino Acids

48.13

Weight (kDa)

8.12

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 231	1.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 226	5.4e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	129, 1131
AasI	GACNNNNNNGTC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	5 cut(s)	176, 213, 429, 564, 769
AclWI	GGATC	3 cut(s)	23, 812, 1209
AcoI	YGGCCR	3 cut(s)	3, 177, 751
AcsI	RAATTY	4 cut(s)	170, 773, 844, 1185
AcuI	CTGAAG	1 cut(s)	927
AfeI	AGCGCT	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflII	CTTAAG	1 cut(s)	1162
AgsI	TTSAA	9 cut(s)	157, 470, 576, 704, 823, 950, 958, 1103, 1191
AjuI	GAANNNNNNNTTGG	2 cut(s)	574, 606
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	7 cut(s)	435, 707, 999, 1034, 1118, 1227, 1267
AluI	AGCT	7 cut(s)	435, 707, 999, 1034, 1118, 1227, 1267
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	4 cut(s)	138, 275, 372, 747
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	3 cut(s)	23, 812, 1209
Aor51HI	AGCGCT	1 cut(s)	400
AoxI	GGCC	6 cut(s)	3, 60, 177, 536, 609, 751
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	5 cut(s)	857, 1039, 1074, 1140, 1267
ApoI	RAATTY	4 cut(s)	170, 773, 844, 1185
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	46, 241, 1142
BaeGI	GKGCMC	2 cut(s)	339, 496
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	1059
BauI	CACGAG	1 cut(s)	1205
Bbv12I	GWGCWC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	844, 1051, 1061, 1127, 1254
BccI	CCATC	2 cut(s)	487, 869
BceAI	ACGGC	1 cut(s)	678
BcoDI	GTCTC	4 cut(s)	138, 275, 372, 747
BfaI	CTAG	2 cut(s)	497, 512
BfoI	RGCGCY	1 cut(s)	402
BfrI	CTTAAG	1 cut(s)	1162
BisI	GCNGC	6 cut(s)	177, 858, 1040, 1075, 1141, 1268
BlsI	GCNGC	6 cut(s)	178, 859, 1041, 1076, 1142, 1269
BmiI	GGNNCC	2 cut(s)	427, 529
BmsI	GCATC	5 cut(s)	34, 224, 507, 634, 1200
BpmI	CTGGAG	5 cut(s)	257, 915, 1021, 1098, 1234
Bpu10I	CCTNAGC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	4 cut(s)	57, 421, 603, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	274, 529, 1018
Bse3DI	GCAATG	2 cut(s)	301, 1143
BseDI	CCNNGG	4 cut(s)	57, 421, 603, 612
BseGI	GGATG	2 cut(s)	215, 506
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	2 cut(s)	301, 1143
BseMII	CTCAG	6 cut(s)	9, 89, 657, 772, 799, 879
BseNI	ACTGG	3 cut(s)	274, 529, 1018
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	2 cut(s)	339, 496
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	5 cut(s)	844, 1051, 1061, 1127, 1254
BsgI	GTGCAG	1 cut(s)	1253
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	6 cut(s)	5, 62, 179, 538, 611, 753
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	180, 219
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	4 cut(s)	138, 275, 372, 747
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	6 cut(s)	5, 62, 179, 538, 611, 753
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	3 cut(s)	339, 496, 1059
Bsp143I	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
BspACI	CCGC	5 cut(s)	176, 213, 429, 564, 769
BspANI	GGCC	6 cut(s)	5, 62, 179, 538, 611, 753
BspCNI	CTCAG	6 cut(s)	10, 88, 658, 771, 798, 878
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	427, 529
BspPI	GGATC	3 cut(s)	23, 812, 1209
BspT107I	GGYRCC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	1162
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	301, 1143
BsrI	ACTGG	3 cut(s)	274, 529, 1018
BssECI	CCNNGG	4 cut(s)	57, 421, 603, 612
BssMI	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
BssSI	CACGAG	1 cut(s)	1205
BssT1I	CCWWGG	2 cut(s)	421, 612
Bst2BI	CACGAG	1 cut(s)	1205
Bst4CI	ACNGT	2 cut(s)	120, 454
BstAFI	CTTAAG	1 cut(s)	1162
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	9 cut(s)	18, 75, 263, 369, 559, 666, 758, 785, 865
BstF5I	GGATG	2 cut(s)	215, 506
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	31, 784, 807, 877, 1204, 1246
BstMAI	GTCTC	4 cut(s)	138, 275, 372, 747
BstMBI	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 1264
BstSLI	GKGCMC	2 cut(s)	339, 496
BstV1I	GCAGC	5 cut(s)	844, 1051, 1061, 1127, 1254
BstX2I	RGATCY	2 cut(s)	804, 1201
BstYI	RGATCY	2 cut(s)	804, 1201
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	6 cut(s)	5, 62, 179, 538, 611, 753
BtsCI	GGATG	2 cut(s)	215, 506
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	7 cut(s)	125, 281, 766, 789, 1025, 1093, 1285
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	401
CviAII	CATG	4 cut(s)	284, 343, 353, 1234
DdeI	CTNAG	9 cut(s)	18, 75, 263, 369, 559, 666, 758, 785, 865
DpnI	GATC	6 cut(s)	30, 783, 806, 876, 1203, 1245
DpnII	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	3 cut(s)	3, 177, 751
EagI	CGGCCG	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	421, 612
Eco24I	GRGCYC	1 cut(s)	1059
Eco31I	GGTCTC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	400
Eco52I	CGGCCG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	927
EcoT14I	CCWWGG	2 cut(s)	421, 612
EcoT38I	GRGCYC	1 cut(s)	1059
ErhI	CCWWGG	2 cut(s)	421, 612
FaeI	CATG	4 cut(s)	287, 346, 356, 1237
FatI	CATG	4 cut(s)	283, 342, 352, 1233
FauNDI	CATATG	1 cut(s)	979
Fnu4HI	GCNGC	6 cut(s)	177, 858, 1040, 1075, 1141, 1268
FokI	GGATG	2 cut(s)	202, 513
FriOI	GRGCYC	1 cut(s)	1059
Fsp4HI	GCNGC	6 cut(s)	177, 858, 1040, 1075, 1141, 1268
FspBI	CTAG	2 cut(s)	497, 512
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	6 cut(s)	177, 858, 1040, 1075, 1141, 1268
GsuI	CTGGAG	5 cut(s)	257, 915, 1021, 1098, 1234
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	6 cut(s)	5, 62, 179, 538, 611, 753
HapII	CCGG	2 cut(s)	180, 219
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	4 cut(s)	287, 346, 356, 1237
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	202, 679, 794
HpaII	CCGG	2 cut(s)	180, 219
HphI	GGTGA	3 cut(s)	46, 241, 1142
Hpy166II	GTNNAC	3 cut(s)	123, 249, 337
Hpy188I	TCNGA	6 cut(s)	28, 207, 229, 484, 604, 987
Hpy8I	GTNNAC	3 cut(s)	123, 249, 337
HpyAV	CCTTC	5 cut(s)	600, 911, 915, 951, 1171
HpyCH4III	ACNGT	2 cut(s)	120, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 1264
HpyF3I	CTNAG	9 cut(s)	18, 75, 263, 369, 559, 666, 758, 785, 865
Hsp92II	CATG	4 cut(s)	287, 346, 356, 1237
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
LmnI	GCTCC	1 cut(s)	1253
Lsp1109I	GCAGC	5 cut(s)	844, 1051, 1061, 1127, 1254
LweI	GCATC	5 cut(s)	34, 224, 507, 634, 1200
MaeI	CTAG	2 cut(s)	497, 512
MaeIII	GTNAC	2 cut(s)	461, 1229
MalI	GATC	6 cut(s)	30, 783, 806, 876, 1203, 1245
MboI	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
MboII	GAAGA	2 cut(s)	320, 926
MflI	RGATCY	2 cut(s)	804, 1201
MhlI	GDGCHC	3 cut(s)	339, 496, 1059
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	1 cut(s)	1007
MnlI	CCTC	8 cut(s)	13, 52, 176, 453, 547, 598, 601, 663
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	3 cut(s)	9, 1124, 1163
MslI	CAYNNNNRTG	1 cut(s)	499
Msp20I	TGGCCA	1 cut(s)	753
MspCI	CTTAAG	1 cut(s)	1162
MspI	CCGG	2 cut(s)	180, 219
Mva1269I	GAATGC	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	432, 1264
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
NlaIII	CATG	4 cut(s)	287, 346, 356, 1237
NlaIV	GGNNCC	2 cut(s)	427, 529
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	202, 794
PkrI	GCNGC	6 cut(s)	178, 859, 1041, 1076, 1142, 1269
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
PsiI	TTATAA	2 cut(s)	129, 1131
PspN4I	GGNNCC	2 cut(s)	427, 529
PsuI	RGATCY	2 cut(s)	804, 1201
RseI	CAYNNNNRTG	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	9, 1124, 1163
SatI	GCNGC	6 cut(s)	177, 858, 1040, 1075, 1141, 1268
Sau3AI	GATC	6 cut(s)	28, 781, 804, 874, 1201, 1243
SchI	GAGTC	1 cut(s)	673
SduI	GDGCHC	3 cut(s)	339, 496, 1059
SfaNI	GCATC	5 cut(s)	34, 224, 507, 634, 1200
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	1162
SmoI	CTYRAG	1 cut(s)	1162
SsiI	CCGC	5 cut(s)	176, 213, 429, 564, 769
SspMI	CTAG	2 cut(s)	497, 512
StyI	CCWWGG	2 cut(s)	421, 612
TaaI	ACNGT	2 cut(s)	120, 454
TaqI	TCGA	2 cut(s)	357, 965
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	202, 794
Tru1I	TTAA	3 cut(s)	9, 1124, 1163
Tru9I	TTAA	3 cut(s)	9, 1124, 1163
TscAI	CASTG	7 cut(s)	125, 281, 766, 796, 1025, 1100, 1285
TseI	GCWGC	5 cut(s)	857, 1039, 1074, 1140, 1267
TspDTI	ATGAA	2 cut(s)	272, 927
TspGWI	ACGGA	1 cut(s)	1211
TspRI	CASTG	7 cut(s)	125, 281, 766, 796, 1025, 1100, 1285
Vha464I	CTTAAG	1 cut(s)	1162
VneI	GTGCAC	1 cut(s)	335
XapI	RAATTY	4 cut(s)	170, 773, 844, 1185
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	2 cut(s)	486, 619
XspI	CTAG	2 cut(s)	497, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.