Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

20637315 .. 20638832

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCCACGAGGAATCAAAAAGAGTTTTTGGAGGATAAACAAACCCTTTTGAATGCAATCAAAAGGAGACATCACCTCAGACCCAACAAGACTACGGTTATAGCTGCGAGACTTGCATCTTATGTGATAGATGACTACAGGTCATCTAGACCATACCTTACTGGGAAGATCGAGTTTGAAGAGGGCGTTGAAAGGGAGGCTTGCTTTTTCAAATTTAAAGAATCTGAAGAAGACATAGCTAGAAAAATATTTGATGAAACTGCCAGGATAGCTGATAATCCAGGAGTCTTGAAGCCTTATTTCGTCACTTATAATGAACAGAAGAAAAATTGGCTTGTGTGCTACGAAAAATTTGACAGTCTTCTGAGTGATGATCCATCAAATATTGTTCAAACAGAAAATAGGGGTGACTCAATTAGGAAGCTTTTAAAGACTATAAAACACATACACGGACGTCGACTTTTTCATGGGGCTCTAAAGGAAAGATGCGCTTATGTTATTATTTCAGGCCGCATCAAAATTATTCTTGTGAGCAGATTGCGTACTTGGGTTGACTTGAAGAAAAAAGGGAGGAATGGTTACTATGAAGATCCCATAGTAGTAGAAAGTACAAAGAAGAAAGACCTCAAAGATTTTAGGGACATGTTAAAGGACGCTATGTTGCAGTTTGGGGTTATTTGGGAGGATAAAGATTCTTTTTTTCAATTTTTCGACAAAAGTGCAGATTATTGGTATGGCTACGAGGGCTTTATTGATCACCTTATTGATCATCCCTCTCTGAAGAACTCCGAAGAAAGAAATAAGTATCTATTCAAAATAGAGCAGTCCATAAGATCGAATTCTCTTCGTGAAGCTGGAGTATTCATGGATAAATTGAAAAGTGAAGAGTTCACTTCTAAGTATTCAAAATGGGATGATAGTGATAAACTGAGTCAGACTCCTGAGTTGGAAAGAGTGTACAATGTAGAGAGTGTTGACTACAAAGGTGACAATGTAAGGCATCTCATCAGATTTCTTTCAAATGCATATGTGCATTATCGCTCAAGAAACAAGGAAGAAGAGTTCGATCTTGACGTCCGGAAATTATATCCTGATTTCTTAAATCGTATGCACATTTACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

375

Amino Acids

44.63

Weight (kDa)

8.84

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AatII	GACGTC	2 cut(s)	457, 1077
AccI	GTMKAC	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	1077
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	2 cut(s)	368, 584
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	212, 350, 838
AcuI	CTGAAG	2 cut(s)	246, 800
AcyI	GRCGYC	2 cut(s)	454, 1074
AfaI	GTAC	3 cut(s)	544, 610, 959
AflIII	ACRYGT	1 cut(s)	642
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	263, 280
AloI	GAACNNNNNNTCC	2 cut(s)	1046, 1078
AluBI	AGCT	5 cut(s)	104, 239, 272, 424, 854
AluI	AGCT	5 cut(s)	104, 239, 272, 424, 854
Alw26I	GTCTC	2 cut(s)	61, 103
AlwI	GGATC	2 cut(s)	368, 584
Aor13HI	TCCGGA	1 cut(s)	1077
AoxI	GGCC	2 cut(s)	3, 508
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	3 cut(s)	212, 350, 838
AspLEI	GCGC	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	65, 419, 749, 998
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	7
BbsI	GAAGAC	2 cut(s)	237, 353
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	2 cut(s)	265, 282
BclI	TGATCA	2 cut(s)	754, 766
BcoDI	GTCTC	2 cut(s)	61, 103
BfaI	CTAG	2 cut(s)	147, 240
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	2 cut(s)	105, 511
BlsI	GCNGC	2 cut(s)	106, 512
Bme1390I	CCNGG	2 cut(s)	265, 282
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	265, 282
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	4 cut(s)	125, 476, 522, 1009
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	237, 353
BplI	GAGNNNNNCTC	2 cut(s)	922, 954
BpmI	CTGGAG	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	1027
BsaHI	GRCGYC	2 cut(s)	454, 1074
BsaWI	WCCGGW	1 cut(s)	1077
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bse1I	ACTGG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	1077
BseBI	CCWGG	2 cut(s)	265, 282
BseGI	GGATG	2 cut(s)	769, 919
BseMII	CTCAG	4 cut(s)	91, 356, 920, 933
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	5, 510
BsiSI	CCGG	1 cut(s)	1078
BslFI	GGGAC	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	61, 103
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	5, 510
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	1077
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	2 cut(s)	5, 510
BspCNI	CTCAG	4 cut(s)	90, 357, 921, 934
BspEI	TCCGGA	1 cut(s)	1077
BspPI	GGATC	2 cut(s)	368, 584
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
BssNI	GRCGYC	2 cut(s)	454, 1074
BssSI	CACGAG	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	265, 282
Bst4CI	ACNGT	2 cut(s)	97, 359
Bst6I	CTCTTC	4 cut(s)	174, 849, 879, 1053
BstACI	GRCGYC	2 cut(s)	454, 1074
BstAUI	TGTACA	1 cut(s)	957
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	5 cut(s)	77, 365, 897, 929, 942
BstF5I	GGATG	2 cut(s)	769, 919
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	7 cut(s)	171, 376, 592, 757, 769, 836, 1069
BstMAI	GTCTC	2 cut(s)	61, 103
BstMBI	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 269, 744
BstNI	CCWGG	2 cut(s)	265, 282
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	263, 280
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	2 cut(s)	237, 353
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	5, 510
BtsCI	GGATG	2 cut(s)	769, 919
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	491
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	543, 609, 958
CviAII	CATG	3 cut(s)	467, 643, 865
CviQI	GTAC	3 cut(s)	543, 609, 958
DdeI	CTNAG	5 cut(s)	77, 365, 897, 929, 942
DpnI	GATC	7 cut(s)	170, 375, 591, 756, 768, 835, 1068
DpnII	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
DraI	TTTAAA	2 cut(s)	217, 429
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	174, 849, 879, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	4 cut(s)	174, 849, 879, 1053
Eco24I	GRGCYC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	246, 800
EcoRI	GAATTC	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	263, 280
EcoT22I	ATGCAT	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	3 cut(s)	470, 646, 868
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 475, 507
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	3 cut(s)	466, 642, 864
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	754, 766
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	105, 511
FokI	GGATG	2 cut(s)	756, 926
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	105, 511
FspBI	CTAG	2 cut(s)	147, 240
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	2 cut(s)	105, 511
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	5, 510
HapII	CCGG	1 cut(s)	1078
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	491
Hin1I	GRCGYC	2 cut(s)	454, 1074
Hin1II	CATG	3 cut(s)	470, 646, 868
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	3 cut(s)	458, 553, 976
HindII	GTYRAC	3 cut(s)	458, 553, 976
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	7 cut(s)	13, 221, 285, 410, 692, 931, 937
HpaII	CCGG	1 cut(s)	1078
HphI	GGTGA	4 cut(s)	65, 419, 749, 998
Hpy166II	GTNNAC	5 cut(s)	458, 553, 891, 958, 976
Hpy188I	TCNGA	7 cut(s)	80, 226, 366, 780, 790, 936, 1010
Hpy188III	TCNNGA	8 cut(s)	147, 289, 848, 941, 1044, 1070, 1078, 1091
Hpy8I	GTNNAC	5 cut(s)	458, 553, 891, 958, 976
Hpy99I	CGWCG	1 cut(s)	459
HpyCH4III	ACNGT	2 cut(s)	97, 359
HpyCH4IV	ACGT	2 cut(s)	454, 1074
HpyCH4V	TGCA	7 cut(s)	56, 116, 664, 722, 1025, 1033, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 269, 744
HpyF3I	CTNAG	5 cut(s)	77, 365, 897, 929, 942
HpySE526I	ACGT	2 cut(s)	454, 1074
Hsp92I	GRCGYC	2 cut(s)	454, 1074
Hsp92II	CATG	3 cut(s)	470, 646, 868
HspAI	GCGC	1 cut(s)	489
Kpn2I	TCCGGA	1 cut(s)	1077
Ksp22I	TGATCA	2 cut(s)	754, 766
Kzo9I	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	4 cut(s)	125, 476, 522, 1009
MaeI	CTAG	2 cut(s)	147, 240
MaeII	ACGT	2 cut(s)	454, 1074
MaeIII	GTNAC	4 cut(s)	304, 407, 578, 986
MalI	GATC	7 cut(s)	170, 375, 591, 756, 768, 835, 1068
MboI	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	212, 328, 350, 414, 519, 704, 838, 872, 1082
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	294, 404, 931, 940
MmeI	TCCRAC	1 cut(s)	927
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1027
MroI	TCCGGA	1 cut(s)	1077
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	216, 428, 647, 1100
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	1078
MspR9I	CCNGG	2 cut(s)	265, 282
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	2 cut(s)	265, 282
MwoI	GCNNNNNNNGC	3 cut(s)	113, 269, 744
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
NlaIII	CATG	3 cut(s)	470, 646, 868
NmuCI	GTSAC	3 cut(s)	304, 407, 986
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	646
PciI	ACATGT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	13, 221, 692
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	106, 512
PleI	GAGTC	4 cut(s)	293, 404, 931, 939
PpsI	GAGTC	4 cut(s)	293, 404, 931, 939
PscI	ACATGT	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	263, 280
PspGI	CCWGG	2 cut(s)	263, 280
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	3 cut(s)	544, 610, 959
RsaNI	GTAC	3 cut(s)	543, 609, 958
SalI	GTCGAC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	216, 428, 647, 1100
SatI	GCNGC	2 cut(s)	105, 511
Sau3AI	GATC	7 cut(s)	168, 373, 589, 754, 766, 833, 1066
SchI	GAGTC	4 cut(s)	294, 404, 931, 940
ScrFI	CCNGG	2 cut(s)	265, 282
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	4 cut(s)	125, 476, 522, 1009
SfcI	CTRYAG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	1042
SmoI	CTYRAG	1 cut(s)	1042
Sse9I	AATT	9 cut(s)	212, 328, 350, 414, 519, 704, 838, 872, 1082
SsiI	CCGC	1 cut(s)	511
SspI	AATATT	2 cut(s)	249, 385
SspMI	CTAG	2 cut(s)	147, 240
StyD4I	CCNGG	2 cut(s)	263, 280
TaaI	ACNGT	2 cut(s)	97, 359
TaiI	ACGT	2 cut(s)	457, 1077
TaqI	TCGA	5 cut(s)	171, 457, 711, 836, 1065
TasI	AATT	9 cut(s)	212, 328, 350, 414, 519, 704, 838, 872, 1082
TatI	WGTACW	2 cut(s)	608, 957
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	13, 221, 692
Tru1I	TTAA	4 cut(s)	216, 428, 647, 1100
Tru9I	TTAA	4 cut(s)	216, 428, 647, 1100
TseFI	GTSAC	3 cut(s)	304, 407, 986
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	3 cut(s)	304, 407, 986
TspDTI	ATGAA	5 cut(s)	270, 330, 455, 600, 853
TspGWI	ACGGA	1 cut(s)	465
XapI	RAATTY	3 cut(s)	212, 350, 838
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	457
XspI	CTAG	2 cut(s)	147, 240
ZraI	GACGTC	2 cut(s)	455, 1075
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.