RchiOBHm_Chr1g0378671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001767
Physical Location & Seq
Reverse (-)
65069635 .. 65070863
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60208

Sequence Viewer

Length: 699 bp
ATGGCGGAGATAGATCCTGAGCAAGATCAAGCAGCACAGCTCCTACAACTAACTAATCTGAGGTTGATTGATTTAATGGGAATTAAATCTTTGCTATCCTACATTTTGAATAGCGCTACGCTAGACGCTTGGATTGAACGAGACACTTTTCTCGATTTCTTCGAATTAGCTCGAACATTAAGAATGTTCATCTCAATGGTTCTTAGACATCCATATTTGAAGACTAGTGCTGAAGCAAGAGTCAAGACATCTTTCGACATTCTACGCATCAGAGATCGCAATAAGACAAAAAAAGGCATTTTTTATAGTGCTTTGAGGAAAACACAATTTGACATGTATTACCCTTGGGATGATGGTATGAGCGATCGGTTGATAGAAGTTTATAATTATAACCGTCAGGGTTGGAGGTCTAACTACAAAGGTTATAGCAGCAAGTGCCTCCTCATTTTCATAAGGAATGTATATTGGCATCCCAAAACTAGCATGGAGGCATATGATTCTGATATTAGGACTCGATATCCCGATTTTCTTAATCGTGCTTATGAGGCGGCATGCAGAATATTTGCGGTTCAAGTGACGTTACTTATAGATTTGAATATAGAGCAGCAGTATGTACAGAATCAAAATGTTGTACCCAGACGTGACAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGTTGGCGGACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

27.44

Weight (kDa)

9.79

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 384, 390
AciI CCGC 4 cut(s) 5, 548, 566, 690
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 615, 633
AfeI AGCGCT 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 5 cut(s) 109, 137, 220, 572, 595
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 641
AluBI AGCT 2 cut(s) 40, 170
AluI AGCT 2 cut(s) 40, 170
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 32, 429, 604
AspLEI GCGC 1 cut(s) 116
AsuII TTCGAA 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 44, 441, 616
BccI CCATC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 122, 225, 480
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 4 cut(s) 33, 430, 549, 605
BlsI GCNGC 4 cut(s) 34, 431, 550, 606
BmgBI CACGTC 1 cut(s) 641
BmsI GCATC 2 cut(s) 276, 478
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 3 cut(s) 208, 355, 469
BseMII CTCAG 2 cut(s) 9, 50
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 3 cut(s) 44, 441, 616
Bsh1285I CGRYCG 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 4 cut(s) 13, 25, 274, 364
BspACI CCGC 4 cut(s) 5, 548, 566, 690
BspCNI CTCAG 2 cut(s) 10, 51
BspPI GGATC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 4 cut(s) 13, 25, 274, 364
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 613
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 18, 59, 203
BstF5I GGATG 3 cut(s) 208, 355, 469
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 4 cut(s) 16, 28, 277, 367
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 13, 25, 274, 364
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 3 cut(s) 435, 545, 687
BstNSI RCATGY 2 cut(s) 337, 555
BstV1I GCAGC 3 cut(s) 44, 441, 616
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BtrI CACGTC 1 cut(s) 641
BtsCI GGATG 3 cut(s) 208, 355, 469
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 1 cut(s) 116
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 614, 632
CviAII CATG 3 cut(s) 334, 484, 552
CviJI RGCY 2 cut(s) 40, 170
CviKI_1 RGCY 2 cut(s) 40, 170
CviQI GTAC 2 cut(s) 614, 632
DdeI CTNAG 3 cut(s) 18, 59, 203
DpnI GATC 4 cut(s) 15, 27, 276, 366
DpnII GATC 4 cut(s) 13, 25, 274, 364
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 344
Eco32I GATATC 1 cut(s) 518
Eco47III AGCGCT 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 337, 487, 555
FatI CATG 3 cut(s) 333, 483, 551
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 33, 430, 549, 605
FokI GGATG 3 cut(s) 195, 362, 456
Fsp4HI GCNGC 4 cut(s) 33, 430, 549, 605
FspBI CTAG 3 cut(s) 122, 225, 480
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 33, 430, 549, 605
HaeII RGCGCY 1 cut(s) 117
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 337, 487, 555
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 4 cut(s) 240, 497, 511, 619
Hpy188I TCNGA 3 cut(s) 60, 272, 502
Hpy188III TCNNGA 4 cut(s) 17, 152, 244, 521
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 2 cut(s) 578, 640
HpyCH4V TGCA 1 cut(s) 555
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 545, 687
HpyF3I CTNAG 3 cut(s) 18, 59, 203
HpySE526I ACGT 2 cut(s) 578, 640
Hsp92II CATG 3 cut(s) 337, 487, 555
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 4 cut(s) 13, 25, 274, 364
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 30, 383, 649
Lsp1109I GCAGC 3 cut(s) 44, 441, 616
LweI GCATC 2 cut(s) 276, 478
MaeI CTAG 3 cut(s) 122, 225, 480
MaeII ACGT 2 cut(s) 578, 640
MaeIII GTNAC 3 cut(s) 574, 579, 641
MalI GATC 4 cut(s) 15, 27, 276, 366
MboI GATC 4 cut(s) 13, 25, 274, 364
MboII GAAGA 2 cut(s) 151, 232
MflI RGATCY 1 cut(s) 13
MluCI AATT 4 cut(s) 81, 164, 326, 385
MlyI GAGTC 2 cut(s) 249, 505
MmeI TCCRAC 1 cut(s) 383
MseI TTAA 4 cut(s) 74, 84, 179, 531
MslI CAYNNNNRTG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 435, 545, 687
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 13, 25, 274, 364
NlaIII CATG 3 cut(s) 337, 487, 555
NmuCI GTSAC 2 cut(s) 574, 641
NspI RCATGY 2 cut(s) 337, 555
NspV TTCGAA 1 cut(s) 162
PaeI GCATGC 1 cut(s) 555
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 2 cut(s) 497, 619
PkrI GCNGC 4 cut(s) 34, 431, 550, 606
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 2 cut(s) 248, 505
PpsI GAGTC 2 cut(s) 248, 505
PscI ACATGT 1 cut(s) 333
PsiI TTATAA 2 cut(s) 384, 390
PsuI RGATCY 1 cut(s) 13
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 2 cut(s) 615, 633
RsaNI GTAC 2 cut(s) 614, 632
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 74, 84, 179, 531
SatI GCNGC 4 cut(s) 33, 430, 549, 605
Sau3AI GATC 4 cut(s) 13, 25, 274, 364
SchI GAGTC 2 cut(s) 249, 505
SetI ASST 7 cut(s) 42, 65, 172, 410, 424, 581, 643
SfaNI GCATC 2 cut(s) 276, 478
SfuI TTCGAA 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 1 cut(s) 555
Sse9I AATT 4 cut(s) 81, 164, 326, 385
SsiI CCGC 4 cut(s) 5, 548, 566, 690
SspI AATATT 1 cut(s) 561
SspMI CTAG 3 cut(s) 122, 225, 480
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 2 cut(s) 581, 643
TaqI TCGA 5 cut(s) 153, 162, 172, 255, 514
TasI AATT 4 cut(s) 81, 164, 326, 385
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 2 cut(s) 497, 619
Tru1I TTAA 4 cut(s) 74, 84, 179, 531
Tru9I TTAA 4 cut(s) 74, 84, 179, 531
TseFI GTSAC 2 cut(s) 574, 641
TseI GCWGC 3 cut(s) 32, 429, 604
Tsp45I GTSAC 2 cut(s) 574, 641
TspDTI ATGAA 2 cut(s) 178, 439
XceI RCATGY 2 cut(s) 337, 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XspI CTAG 3 cut(s) 122, 225, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.