Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

65382448 .. 65384463

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGTCTGGTTGACGAAAGAACCATATTGAGGAGCATCGTAACAAAACAGGATCGTCTGTACCTCCTCAATAAGGTGATAGGCGCTCGTTTAATCTCGTATGAGATAAAGAACTTCTTCGTGCCAGAATCATACTACACTGGAACTATCCGATTTGACAACGAGACACAAAAAGAAGCCTGTTTTTTCAAATTTGCACAGAATGAAGGAGAAGTAGCTAAGCATATTTTTAAAGCAGCTTCCAAATTGAATCAAGATGGAATCCTACAGCCCTGGTTTCTCACCAATAACAAATTAGAGAAGACGTGGATTTTATGTTACGAGCACTTCAACTCTCTTCTCAGTGAGCTACCAGATAACAAAATTTTTGAGCTGCCTGAAAATTGGCGTCTCTCTGTTAGGAACTCTATGAAGACCATCAAGTACATACATGAACGCTATCTTCTTCATCTGGGTTTAAAAAAAAGAAGTAGCTACGCCCTAATTAATGACAGGAAGAATGGTTTCAAAATCAAAATCCTCTTTGATCGTAATTCATCGACTGAGAATTCGGTGTACGACATAAAAAAGGCAAAGTTGGATGATTGGAAAGATTATAAGGACGTGCTGGAGTTTCTGTTGAAGTCATTGCCACAAACGGATGACCTAAAGTTGTTTCTAAATTATTTTGGTCTGGACCAAAAAGGGAAATATGATGTATTCGTTGATCGACTCATTGCACATCCTTTTCTCTTGTGTGCTGAAGAAAACATGAATTTTATTGCAAACGTACAGCATGCCATTATTACCCAAAGGATCAGTTTTTTAAGTGGTGAAAAATTCAAAGAGTATGAGAATTGGGATAAGAAACTTGATGATTGGCTGAAAGGTATATACTCACAGCAAATAGTAGATGGATTCAGTTATAACGTCATGAGTGTAACAGGTCTCATTTGGTTTTTGAGAGATGTTTATGTCCACAATTGTGATAAATTTGAAGAGGTTGATTGTCACTTGATGCAATCGTTTCCTGGGTTATACGGTCAGCTTTACGAATCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

347

Amino Acids

41.11

Weight (kDa)

7.08

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 906
AclWI	GGATC	2 cut(s)	60, 803
AcsI	RAATTY	6 cut(s)	191, 363, 547, 754, 818, 971
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	4 cut(s)	62, 425, 557, 771
AfiI	CCNNNNNNNGG	2 cut(s)	30, 73
AgsI	TTSAA	7 cut(s)	190, 250, 331, 508, 622, 823, 977
AjiI	CACGTC	2 cut(s)	306, 604
AjnI	CCWGG	2 cut(s)	272, 1009
AleI	CACNNNNGTG	1 cut(s)	963
AluBI	AGCT	6 cut(s)	218, 239, 349, 373, 474, 1027
AluI	AGCT	6 cut(s)	218, 239, 349, 373, 474, 1027
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	158, 395, 932
AlwI	GGATC	2 cut(s)	60, 803
ApeKI	GCWGC	2 cut(s)	236, 373
ApoI	RAATTY	6 cut(s)	191, 363, 547, 754, 818, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	2 cut(s)	116, 503
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	676
AsuHPI	GGTGA	3 cut(s)	88, 274, 824
AvaII	GGWCC	1 cut(s)	676
BbsI	GAAGAC	2 cut(s)	308, 419
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	248, 360
BccI	CCATC	3 cut(s)	251, 425, 887
BciT130I	CCWGG	2 cut(s)	274, 1011
BcoDI	GTCTC	3 cut(s)	158, 395, 932
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	237, 374
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	238, 375
Bme1390I	CCNGG	2 cut(s)	274, 1011
Bme18I	GGWCC	1 cut(s)	676
BmgBI	CACGTC	2 cut(s)	306, 604
BmgT120I	GGNCC	1 cut(s)	676
BmrFI	CCNGG	2 cut(s)	274, 1011
BmsI	GCATC	2 cut(s)	45, 987
BpiI	GAAGAC	2 cut(s)	308, 419
BpmI	CTGGAG	1 cut(s)	629
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	272, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 73
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	626, 714
BseBI	CCWGG	2 cut(s)	274, 1011
BseDI	CCNNGG	2 cut(s)	272, 1010
BseGI	GGATG	3 cut(s)	586, 646, 721
BseLI	CCNNNNNNNGG	2 cut(s)	30, 73
BseMI	GCAATG	2 cut(s)	626, 714
BseMII	CTCAG	2 cut(s)	355, 534
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	46, 56
BseXI	GCAGC	2 cut(s)	248, 360
BsiHKAI	GWGCWC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	30, 73
BsmAI	GTCTC	3 cut(s)	158, 395, 932
BsmBI	CGTCTC	1 cut(s)	395
Bso31I	GGTCTC	1 cut(s)	932
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	52, 526, 706, 795
Bsp1720I	GCTNAGC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	354, 535
BspHI	TCATGA	1 cut(s)	912
BspPI	GGATC	2 cut(s)	60, 803
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	2 cut(s)	626, 714
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	272, 1010
BssMI	GATC	4 cut(s)	52, 526, 706, 795
BssNI	GRCGYC	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	274, 1011
Bst4CI	ACNGT	1 cut(s)	1022
Bst6I	CTCTTC	2 cut(s)	342, 972
BstACI	GRCGYC	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	3 cut(s)	219, 341, 543
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	586, 646, 721
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	55, 529, 709, 798
BstMAI	GTCTC	3 cut(s)	158, 395, 932
BstMBI	GATC	4 cut(s)	52, 526, 706, 795
BstNI	CCWGG	2 cut(s)	274, 1011
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	272, 1009
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	248, 360
BstV2I	GAAGAC	2 cut(s)	308, 419
BtrI	CACGTC	2 cut(s)	306, 604
BtsCI	GGATG	3 cut(s)	586, 646, 721
BtsIMutI	CAGTG	2 cut(s)	138, 349
Cac8I	GCNNGC	1 cut(s)	777
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	676
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	61, 424, 556, 770
CviAII	CATG	4 cut(s)	431, 751, 776, 913
CviJI	RGCY	9 cut(s)	179, 218, 239, 271, 349, 373, 474, 862, 1027
CviKI_1	RGCY	9 cut(s)	179, 218, 239, 271, 349, 373, 474, 862, 1027
CviQI	GTAC	4 cut(s)	61, 424, 556, 770
DdeI	CTNAG	3 cut(s)	219, 341, 543
DpnI	GATC	4 cut(s)	54, 528, 708, 797
DpnII	GATC	4 cut(s)	52, 526, 706, 795
DraI	TTTAAA	2 cut(s)	232, 459
Eam1104I	CTCTTC	2 cut(s)	342, 972
EarI	CTCTTC	2 cut(s)	342, 972
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	762
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	272, 1009
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	4 cut(s)	434, 754, 779, 916
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	4 cut(s)	430, 750, 775, 912
Fnu4HI	GCNGC	2 cut(s)	237, 374
FokI	GGATG	3 cut(s)	593, 653, 708
Fsp4HI	GCNGC	2 cut(s)	237, 374
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	237, 374
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	87
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	434, 754, 779, 916
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	7 cut(s)	4, 128, 250, 261, 711, 897, 1034
HphI	GGTGA	3 cut(s)	88, 274, 824
Hpy166II	GTNNAC	3 cut(s)	13, 556, 958
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	3 cut(s)	254, 674, 913
Hpy8I	GTNNAC	3 cut(s)	13, 556, 958
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	1022
HpyCH4IV	ACGT	4 cut(s)	305, 603, 768, 909
HpyCH4V	TGCA	4 cut(s)	197, 719, 764, 1000
HpyF3I	CTNAG	3 cut(s)	219, 341, 543
HpySE526I	ACGT	4 cut(s)	305, 603, 768, 909
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	434, 754, 779, 916
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	52, 526, 706, 795
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	248, 360
LweI	GCATC	2 cut(s)	45, 987
MaeII	ACGT	4 cut(s)	305, 603, 768, 909
MaeIII	GTNAC	4 cut(s)	40, 317, 919, 989
MalI	GATC	4 cut(s)	54, 528, 708, 797
MboI	GATC	4 cut(s)	52, 526, 706, 795
MboII	GAAGA	9 cut(s)	109, 313, 329, 424, 434, 437, 508, 755, 989
MfeI	CAATTG	1 cut(s)	961
MhlI	GDGCHC	1 cut(s)	327
MlyI	GAGTC	2 cut(s)	13, 705
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	5 cut(s)	24, 74, 77, 530, 973
MroXI	GAANNNNTTC	2 cut(s)	116, 503
MseI	TTAA	5 cut(s)	92, 231, 458, 486, 806
MslI	CAYNNNNRTG	1 cut(s)	963
MspR9I	CCNGG	2 cut(s)	274, 1011
MunI	CAATTG	1 cut(s)	961
MvaI	CCWGG	2 cut(s)	274, 1011
NdeII	GATC	4 cut(s)	52, 526, 706, 795
NlaIII	CATG	4 cut(s)	434, 754, 779, 916
NmuCI	GTSAC	1 cut(s)	989
NspI	RCATGY	1 cut(s)	779
OliI	CACNNNNGTG	1 cut(s)	963
PaeI	GCATGC	1 cut(s)	779
PagI	TCATGA	1 cut(s)	912
PdmI	GAANNNNTTC	2 cut(s)	116, 503
PfeI	GAWTC	5 cut(s)	128, 250, 261, 897, 1034
PkrI	GCNGC	2 cut(s)	238, 375
PleI	GAGTC	2 cut(s)	12, 705
PpsI	GAGTC	2 cut(s)	12, 705
PshBI	ATTAAT	1 cut(s)	486
PsiI	TTATAA	2 cut(s)	597, 906
Psp6I	CCWGG	2 cut(s)	272, 1009
PspGI	CCWGG	2 cut(s)	272, 1009
PspPI	GGNCC	1 cut(s)	676
RsaI	GTAC	4 cut(s)	62, 425, 557, 771
RsaNI	GTAC	4 cut(s)	61, 424, 556, 770
RseI	CAYNNNNRTG	1 cut(s)	963
SaqAI	TTAA	5 cut(s)	92, 231, 458, 486, 806
SatI	GCNGC	2 cut(s)	237, 374
Sau3AI	GATC	4 cut(s)	52, 526, 706, 795
Sau96I	GGNCC	1 cut(s)	676
SchI	GAGTC	2 cut(s)	13, 705
ScrFI	CCNGG	2 cut(s)	274, 1011
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	45, 987
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	963
SphI	GCATGC	1 cut(s)	779
StyD4I	CCNGG	2 cut(s)	272, 1009
TaaI	ACNGT	1 cut(s)	1022
TaiI	ACGT	4 cut(s)	308, 606, 771, 912
TaqI	TCGA	2 cut(s)	539, 709
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	5 cut(s)	128, 250, 261, 897, 1034
Tru1I	TTAA	5 cut(s)	92, 231, 458, 486, 806
Tru9I	TTAA	5 cut(s)	92, 231, 458, 486, 806
TscAI	CASTG	2 cut(s)	145, 349
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	2 cut(s)	236, 373
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	6 cut(s)	219, 425, 437, 447, 525, 767
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	145, 349
VpaK11BI	GGWCC	1 cut(s)	676
VspI	ATTAAT	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	6 cut(s)	191, 363, 547, 754, 818, 971
XceI	RCATGY	1 cut(s)	779
XmnI	GAANNNNTTC	2 cut(s)	116, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.