RLG00000026386

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001767
Physical Location & Seq
Forward (+)
2676589 .. 2678853
2265 bp
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UTR
Exon/CDS
Intron
RLM00000026386

Sequence Viewer

Length: 1467 bp
ATGGGGGTACAATATTTTTGGGTACGTGTACATGGGAAAAAATGGATTACGACCCTCTTCATCTTCCACTCCATTTCCCCCATCCTCCTCTTCAACTCCTCCTCGCTCCACCGATCGGCACGGGCTTGCTTACAGCAGATCTTGGATTCCTCACTCTGTTTTTTCTCTGGGGATCATTTGGGCGATGCGATACAATACAACACCGACTGGGAGGGGCACCTGGAGAAGCTGATGGAGAGGGAGAAGGAGAACCGGAAGCTTATAGGGAACTGTATTGAGGAGTTGAAGAAGAAGGGACTGGAGTTTGATCTGTTGAATGAGGTGGATGCGCTCAGGAGGGCTAAGAGTACGGGGGTTGAGGCCGAAGTGCTTATAGCCCTTGATGTGTTGGAGTACGAGTTTTCAGCCAGAATGGATAACACTCAAGCGTATTATTCTGGTAGAGTCAAATTTTCTTACTGTGGAGAAAAAGAGGCAAAGTTTTTTAAGTGCCGTTCGGAGATAATTGCAAAGAAGATGTGGGAATACAGCTCCGAGTTACGACACGAGACCGTATTGAAGCTGTTATTCTTCACCTATTGTGACCCGCTAAAGTGTTGGATTGTATGTTATGAGAACTTTGAGAAACTTTTAGATGGGTGGCTGAGTAGCCAACACATTGGTAGGCGGCGCAGGACTACGGATGATTTGTTAGGGACCGACTTCGCTATTTCAATCGGGAGTCTTATAGAAGGAATTATCTACCTTCATCAGCATGGTATTTTTCACATGGGTTTGGATCGATCGTCCAATTACGTGGTTATATCGAACAAAATTAAAATTATCAACATTGGTGACATGGATGATAGCACTCGTAGGGAAGATCTAGACCGAAATGACGAGGCAACAATAGATAATTTGAGTGCAAGTGACTATATGGGATTCAAAAATTTGCTGAGGGATCACATATTGAGTACTGGGGGTAGGGATTGGATGGAGCGAGATTCCTTCCTAGCTTATTTCGATATGGCTGCTCAAGTCCCGAACAAGAAATTCTCTAAGCATCTTCGCAATCATCCTTATATATCGACCAACGCTGATCATAGAATGAAGAATTTTGACAACATAATGCTTAAGGTGAATACAGAATCTAAGCGTCCCAGATTATATTATTTTGAATCAGCTTTGGAGGCGGCTGAGGAATTTGACCAGTATAGGGGCTGGAATCATGTTATGAGCCATGGTTTAAGGAGAGTGTACGAGCATGTAGATAAGAAGACAGGCAGACGATCAAGGTACAACGGTAACAGTGTAATGGATCTCCTCAGATTTTTGAGAAATGCATATTGGCATCGTCAACAAATCACATCGGAACAGCTTGACAGTGATGTGAGAAGACACTACCGCGATTTCCTTAATCGTGTCTATTGTGCGGCATGTAGAATATATGATACAAGCATGGAGCAACTGCATCCAATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

489

Amino Acids

57.44

Weight (kDa)

7.64

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_2-5A PF06479 413 - 455 8.2e-06 Ribonuclease 2-5A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 216
AccII CGCG 1 cut(s) 1386
AciI CCGC 5 cut(s) 587, 667, 1172, 1384, 1412
AclWI GGATC 4 cut(s) 180, 786, 948, 1305
AcsI RAATTY 5 cut(s) 449, 928, 1031, 1093, 1181
AfaI GTAC 8 cut(s) 9, 24, 30, 349, 395, 955, 1238, 1277
AfiI CCNNNNNNNGG 2 cut(s) 115, 1195
AflII CTTAAG 1 cut(s) 1112
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 7 cut(s) 94, 286, 316, 559, 714, 925, 1157
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 1309, 1341
AluBI AGCT 7 cut(s) 229, 259, 531, 562, 995, 1163, 1357
AluI AGCT 7 cut(s) 229, 259, 531, 562, 995, 1163, 1357
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 4 cut(s) 180, 786, 948, 1305
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 5 cut(s) 449, 928, 1031, 1093, 1181
AspLEI GCGC 2 cut(s) 331, 672
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 3 cut(s) 565, 845, 1129
AvaII GGWCC 1 cut(s) 696
BaeGI GKGCMC 1 cut(s) 219
BaeI ACNNNNGTAYC 2 cut(s) 1267, 1300
BanI GGYRCC 1 cut(s) 216
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 2 cut(s) 1262, 1381
BbvCI CCTCAGC 2 cut(s) 935, 1176
BbvI GCAGC 1 cut(s) 997
BccI CCATC 4 cut(s) 89, 226, 629, 967
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 866, 992
BfrI CTTAAG 1 cut(s) 1112
BglII AGATCT 2 cut(s) 138, 862
BisI GCNGC 4 cut(s) 668, 1011, 1173, 1413
BlsI GCNGC 4 cut(s) 669, 1012, 1174, 1414
BmcAI AGTACT 1 cut(s) 955
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 696
BmiI GGNNCC 2 cut(s) 218, 697
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 2 cut(s) 217, 966
BmsI GCATC 5 cut(s) 175, 316, 1051, 1339, 1459
BmuI ACTGGG 2 cut(s) 217, 966
BpiI GAAGAC 2 cut(s) 1262, 1381
BpmI CTGGAG 2 cut(s) 242, 320
Bpu10I CCTNAGC 3 cut(s) 332, 935, 1176
BpuEI CTTGAG 2 cut(s) 408, 999
Bsa29I ATCGAT 1 cut(s) 781
BsaAI YACGTR 2 cut(s) 26, 796
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 1219
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 1195
Bse1I ACTGG 4 cut(s) 212, 303, 961, 1189
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 1219
BseGI GGATG 7 cut(s) 81, 331, 688, 847, 978, 1054, 1450
BseLI CCNNNNNNNGG 2 cut(s) 115, 1195
BseMII CTCAG 5 cut(s) 346, 635, 926, 1167, 1318
BseNI ACTGG 4 cut(s) 212, 303, 961, 1189
BseRI GAGGAG 5 cut(s) 77, 88, 91, 293, 1292
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 997
Bsh1236I CGCG 1 cut(s) 1386
Bsh1285I CGRYCG 2 cut(s) 116, 785
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 216
BshVI ATCGAT 1 cut(s) 781
BsiEI CGRYCG 2 cut(s) 116, 785
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 4 cut(s) 309, 709, 1004, 1122
BslI CCNNNNNNNGG 2 cut(s) 115, 1195
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 4 cut(s) 309, 709, 1004, 1122
BsnI GGCC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 1219
BspACI CCGC 5 cut(s) 587, 667, 1172, 1384, 1412
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 5 cut(s) 345, 636, 927, 1168, 1317
BspDI ATCGAT 1 cut(s) 781
BspFNI CGCG 1 cut(s) 1386
BspLI GGNNCC 2 cut(s) 218, 697
BspPI GGATC 4 cut(s) 180, 786, 948, 1305
BspT107I GGYRCC 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 1112
BspTNI GGTCTC 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 28
BsrI ACTGG 4 cut(s) 212, 303, 961, 1189
BssECI CCNNGG 1 cut(s) 1219
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 1219
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 6 cut(s) 272, 461, 553, 1283, 1289, 1364
Bst6I CTCTTC 2 cut(s) 62, 95
BstAFI CTTAAG 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 28
BstBAI YACGTR 2 cut(s) 26, 796
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 8 cut(s) 332, 342, 644, 935, 1038, 1131, 1176, 1304
BstDSI CCRYGG 1 cut(s) 1219
BstF5I GGATG 7 cut(s) 81, 331, 688, 847, 978, 1054, 1450
BstFNI CGCG 1 cut(s) 1386
BstHHI GCGC 2 cut(s) 331, 672
BstMAI GTCTC 1 cut(s) 542
BstMCI CGRYCG 2 cut(s) 116, 785
BstMWI GCNNNNNNNGC 1 cut(s) 1169
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 1247, 1419
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 1386
BstV1I GCAGC 1 cut(s) 997
BstV2I GAAGAC 2 cut(s) 1262, 1381
BstX2I RGATCY 3 cut(s) 138, 862, 1297
BstXI CCANNNNNNTGG 2 cut(s) 659, 796
BstYI RGATCY 3 cut(s) 138, 862, 1297
Bsu15I ATCGAT 1 cut(s) 781
BsuRI GGCC 1 cut(s) 362
BsuTUI ATCGAT 1 cut(s) 781
BtgI CCRYGG 1 cut(s) 1219
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 7 cut(s) 81, 331, 688, 847, 978, 1054, 1450
BtsIMutI CAGTG 2 cut(s) 1294, 1369
Cac8I GCNNGC 1 cut(s) 127
CfoI GCGC 2 cut(s) 331, 672
Cfr13I GGNCC 1 cut(s) 696
ClaI ATCGAT 1 cut(s) 781
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 8 cut(s) 8, 23, 29, 348, 394, 954, 1237, 1276
CviAII CATG 9 cut(s) 32, 755, 769, 838, 1208, 1220, 1244, 1416, 1438
CviQI GTAC 8 cut(s) 8, 23, 29, 348, 394, 954, 1237, 1276
DdeI CTNAG 8 cut(s) 332, 342, 644, 935, 1038, 1131, 1176, 1304
Eam1104I CTCTTC 2 cut(s) 62, 95
EarI CTCTTC 2 cut(s) 62, 95
Eco130I CCWWGG 1 cut(s) 1219
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 1219
EcoT22I ATGCAT 1 cut(s) 1324
ErhI CCWWGG 1 cut(s) 1219
FaeI CATG 9 cut(s) 35, 758, 772, 841, 1211, 1223, 1247, 1419, 1441
FaqI GGGAC 4 cut(s) 309, 709, 1004, 1122
FatI CATG 9 cut(s) 31, 754, 768, 837, 1207, 1219, 1243, 1415, 1437
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 4 cut(s) 668, 1011, 1173, 1413
FokI GGATG 7 cut(s) 68, 338, 695, 854, 985, 1041, 1437
Fsp4HI GCNGC 4 cut(s) 668, 1011, 1173, 1413
FspBI CTAG 2 cut(s) 866, 992
GlaI GCGC 2 cut(s) 330, 671
GluI GCNGC 4 cut(s) 668, 1011, 1173, 1413
GsuI CTGGAG 2 cut(s) 242, 320
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 1124
HhaI GCGC 2 cut(s) 331, 672
Hin1II CATG 9 cut(s) 35, 758, 772, 841, 1211, 1223, 1247, 1419, 1441
Hin6I GCGC 2 cut(s) 329, 670
HinP1I GCGC 2 cut(s) 329, 670
HincII GTYRAC 1 cut(s) 1337
HindII GTYRAC 1 cut(s) 1337
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 8 cut(s) 146, 444, 721, 921, 983, 1127, 1157, 1204
HpaII CCGG 1 cut(s) 253
HphI GGTGA 3 cut(s) 565, 845, 1129
Hpy166II GTNNAC 3 cut(s) 29, 1237, 1337
Hpy188I TCNGA 4 cut(s) 499, 535, 1307, 1351
Hpy188III TCNNGA 4 cut(s) 334, 718, 866, 1021
Hpy8I GTNNAC 3 cut(s) 29, 1237, 1337
HpyAV CCTTC 5 cut(s) 238, 286, 725, 755, 997
HpyCH4III ACNGT 6 cut(s) 272, 461, 553, 1283, 1289, 1364
HpyCH4IV ACGT 2 cut(s) 25, 795
HpyCH4V TGCA 4 cut(s) 509, 905, 1322, 1450
HpyF10VI GCNNNNNNNGC 1 cut(s) 1169
HpyF3I CTNAG 8 cut(s) 332, 342, 644, 935, 1038, 1131, 1176, 1304
HpySE526I ACGT 2 cut(s) 25, 795
Hsp92II CATG 9 cut(s) 35, 758, 772, 841, 1211, 1223, 1247, 1419, 1441
HspAI GCGC 2 cut(s) 329, 670
Ksp22I TGATCA 1 cut(s) 1078
LmnI GCTCC 4 cut(s) 111, 536, 976, 1441
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 5 cut(s) 175, 316, 1051, 1339, 1459
MaeI CTAG 2 cut(s) 866, 992
MaeII ACGT 2 cut(s) 25, 795
MaeIII GTNAC 5 cut(s) 537, 581, 833, 908, 1283
MflI RGATCY 3 cut(s) 138, 862, 1297
MhlI GDGCHC 1 cut(s) 219
MlyI GAGTC 2 cut(s) 453, 730
MmeI TCCRAC 2 cut(s) 369, 578
Mph1103I ATGCAT 1 cut(s) 1324
MseI TTAA 5 cut(s) 486, 816, 1113, 1226, 1395
MslI CAYNNNNRTG 1 cut(s) 753
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 1386
MwoI GCNNNNNNNGC 1 cut(s) 1169
NcoI CCATGG 1 cut(s) 1219
NlaIII CATG 9 cut(s) 35, 758, 772, 841, 1211, 1223, 1247, 1419, 1441
NlaIV GGNNCC 2 cut(s) 218, 697
NmuCI GTSAC 3 cut(s) 581, 833, 908
NsiI ATGCAT 1 cut(s) 1324
NspI RCATGY 2 cut(s) 1247, 1419
PfeI GAWTC 6 cut(s) 146, 921, 983, 1127, 1157, 1204
PkrI GCNGC 4 cut(s) 669, 1012, 1174, 1414
Ple19I CGATCG 2 cut(s) 116, 785
PleI GAGTC 2 cut(s) 452, 729
PpsI GAGTC 2 cut(s) 452, 729
Ppu21I YACGTR 2 cut(s) 26, 796
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 218, 697
PspPI GGNCC 1 cut(s) 696
PsuI RGATCY 3 cut(s) 138, 862, 1297
PvuI CGATCG 2 cut(s) 116, 785
RsaI GTAC 8 cut(s) 9, 24, 30, 349, 395, 955, 1238, 1277
RsaNI GTAC 8 cut(s) 8, 23, 29, 348, 394, 954, 1237, 1276
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 5 cut(s) 486, 816, 1113, 1226, 1395
SatI GCNGC 4 cut(s) 668, 1011, 1173, 1413
Sau96I GGNCC 1 cut(s) 696
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 2 cut(s) 453, 730
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 5 cut(s) 175, 316, 1051, 1339, 1459
SinI GGWCC 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 3 cut(s) 423, 1014, 1112
SmoI CTYRAG 3 cut(s) 423, 1014, 1112
SsiI CCGC 5 cut(s) 587, 667, 1172, 1384, 1412
SspI AATATT 1 cut(s) 14
SspMI CTAG 2 cut(s) 866, 992
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 1219
TaaI ACNGT 6 cut(s) 272, 461, 553, 1283, 1289, 1364
TaiI ACGT 2 cut(s) 28, 798
TaqI TCGA 4 cut(s) 781, 806, 1002, 1067
TaqII GACCGA 2 cut(s) 713, 885
TatI WGTACW 2 cut(s) 28, 953
TauI GCSGC 3 cut(s) 670, 1175, 1415
TfiI GAWTC 6 cut(s) 146, 921, 983, 1127, 1157, 1204
Tru1I TTAA 5 cut(s) 486, 816, 1113, 1226, 1395
Tru9I TTAA 5 cut(s) 486, 816, 1113, 1226, 1395
TscAI CASTG 2 cut(s) 1294, 1369
TseFI GTSAC 3 cut(s) 581, 833, 908
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 3 cut(s) 581, 833, 908
TspDTI ATGAA 3 cut(s) 49, 737, 1103
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 2 cut(s) 1294, 1369
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 696
XapI RAATTY 5 cut(s) 449, 928, 1031, 1093, 1181
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 2 cut(s) 1247, 1419
XspI CTAG 2 cut(s) 866, 992
ZrmI AGTACT 1 cut(s) 955
Zsp2I ATGCAT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.