Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

269674 .. 271264

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgaatgtggacatcctgcaatacgagtttttattcagaacagaggatgacccatatttttctggaaagatcacattctcttatagtgaagaaagagaggcgaggtttttccttgttaaagacgatgagatagcaatgaagatatgggaggaaagctcaaacttaagacatgatgcaattttaaagctttggtttgtcagctattgtgacaagttcgaaggttggattttgtgctatgagaaattcgaccatcttctaactgaatggctaaagttagatgacatcgaaacaaagatcagagataatgatttgctaaatactgagtttagcccttccatttgcacacttatagaaggaatcaattatctcaacgagcgtaatctttttcacgggggtttggaccaaagctgcaacttcgttgttataaataaggaggtgaaaattatcaatatcggcaagcatagcactcgtatggcggagatagatcctgagcaagatcaagcagcacagctcctacaactaactaatctgaggttgattgatttaatgggaattaaatctttgctatcctacattttgaatagcgctacgctagacgcttggattgaacgagacacttttctcgatttcttcgaattagctcgaacattaagctacagaatgttcatctcaatggttcttagacatccatatttgaagactagtgctgaagcaagagtcaagacatctttcgacattctacgcatcagagatcgcaataagacaaaaaaaggcattttttatagtgctttgaggaaaacacaatttgacatgtattacccttgggatgatggtatgagcgatcggttgatagaagtttataattataaccgtcagggttggaggtctaactacaaaggttatagcagcaagtgcctcctcattttcataaggaatgtatattggcatcccaaaactagcatggaggcatatgattctgatattaggactcgatatcccgattttcttaatcgtgcttatgaggcggcatgcagaatatttgcggttcaagtgacgttacttatagatttgaatatagagcagcagtatgtacagaatcaaaatgttgtacccagacgtgacagaggcagaggcagaggcagaggcagagttggcggacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

45.98

Weight (kDa)

6.63

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	425, 861, 867
AciI	CCGC	4 cut(s)	476, 1025, 1043, 1155
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	2 cut(s)	1092, 1110
AfeI	AGCGCT	1 cut(s)	586
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	5 cut(s)	580, 608, 697, 1049, 1072
AhlI	ACTAGT	1 cut(s)	701
AjiI	CACGTC	1 cut(s)	1118
AluBI	AGCT	7 cut(s)	156, 187, 201, 408, 511, 641, 654
AluI	AGCT	7 cut(s)	156, 187, 201, 408, 511, 641, 654
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	586
ApeKI	GCWGC	4 cut(s)	408, 503, 906, 1081
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	448
AsuII	TTCGAA	2 cut(s)	216, 633
AvaII	GGWCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	704
BbvI	GCAGC	4 cut(s)	395, 515, 918, 1093
BccI	CCATC	2 cut(s)	258, 824
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BcoDI	GTCTC	1 cut(s)	606
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	3 cut(s)	593, 702, 957
BfmI	CTRYAG	1 cut(s)	655
BfoI	RGCGCY	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	5 cut(s)	409, 504, 907, 1026, 1082
BlsI	GCNGC	5 cut(s)	410, 505, 908, 1027, 1083
Bme18I	GGWCC	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	1118
BmgT120I	GGNCC	1 cut(s)	400
BmsI	GCATC	3 cut(s)	163, 753, 955
BpiI	GAAGAC	1 cut(s)	704
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	2 cut(s)	216, 633
BsaJI	CCNNGG	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	5 cut(s)	12, 52, 685, 832, 946
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	3 cut(s)	312, 480, 521
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	4 cut(s)	395, 515, 918, 1093
Bsh1285I	CGRYCG	1 cut(s)	844
BsiEI	CGRYCG	1 cut(s)	844
BsmAI	GTCTC	1 cut(s)	606
Bsp119I	TTCGAA	2 cut(s)	216, 633
Bsp1407I	TGTACA	1 cut(s)	1090
Bsp143I	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
BspACI	CCGC	4 cut(s)	476, 1025, 1043, 1155
BspCNI	CTCAG	3 cut(s)	313, 481, 522
BspPI	GGATC	1 cut(s)	479
BspT104I	TTCGAA	2 cut(s)	216, 633
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	1090
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
BssT1I	CCWWGG	1 cut(s)	821
Bst4CI	ACNGT	1 cut(s)	872
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	912
BstAUI	TGTACA	1 cut(s)	1090
BstBI	TTCGAA	2 cut(s)	216, 633
BstC8I	GCNNGC	2 cut(s)	458, 1030
BstDEI	CTNAG	4 cut(s)	321, 489, 530, 680
BstF5I	GGATG	5 cut(s)	12, 52, 685, 832, 946
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	6 cut(s)	72, 297, 487, 499, 754, 844
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
BstMCI	CGRYCG	1 cut(s)	844
BstMWI	GCNNNNNNNGC	4 cut(s)	462, 912, 1022, 1152
BstNSI	RCATGY	2 cut(s)	814, 1032
BstSFI	CTRYAG	1 cut(s)	655
BstV1I	GCAGC	4 cut(s)	395, 515, 918, 1093
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	1118
BtsCI	GGATG	5 cut(s)	12, 52, 685, 832, 946
Cac8I	GCNNGC	2 cut(s)	458, 1030
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	1091, 1109
CviAII	CATG	4 cut(s)	170, 811, 961, 1029
CviJI	RGCY	9 cut(s)	156, 187, 201, 268, 330, 408, 511, 641, 654
CviKI_1	RGCY	9 cut(s)	156, 187, 201, 268, 330, 408, 511, 641, 654
CviQI	GTAC	2 cut(s)	1091, 1109
DdeI	CTNAG	4 cut(s)	321, 489, 530, 680
DpnI	GATC	6 cut(s)	71, 296, 486, 498, 753, 843
DpnII	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
DraI	TTTAAA	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	821
Eco32I	GATATC	1 cut(s)	995
Eco47I	GGWCC	1 cut(s)	400
Eco47III	AGCGCT	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	995
EcoT14I	CCWWGG	1 cut(s)	821
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	4 cut(s)	173, 814, 964, 1032
FatI	CATG	4 cut(s)	169, 810, 960, 1028
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	5 cut(s)	409, 504, 907, 1026, 1082
FokI	GGATG	4 cut(s)	59, 672, 839, 933
Fsp4HI	GCNGC	5 cut(s)	409, 504, 907, 1026, 1082
FspBI	CTAG	3 cut(s)	593, 702, 957
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	5 cut(s)	409, 504, 907, 1026, 1082
HaeII	RGCGCY	1 cut(s)	588
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	173, 814, 964, 1032
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	357, 717, 974, 988, 1096
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	5 cut(s)	38, 299, 531, 749, 979
Hpy188III	TCNNGA	5 cut(s)	63, 488, 623, 721, 998
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	212, 342, 347
HpyCH4III	ACNGT	1 cut(s)	872
HpyCH4IV	ACGT	2 cut(s)	1055, 1117
HpyCH4V	TGCA	5 cut(s)	19, 176, 342, 411, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	462, 912, 1022, 1152
HpyF3I	CTNAG	4 cut(s)	321, 489, 530, 680
HpySE526I	ACGT	2 cut(s)	1055, 1117
Hsp92II	CATG	4 cut(s)	173, 814, 964, 1032
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	5 cut(s)	29, 48, 501, 860, 1126
Lsp1109I	GCAGC	4 cut(s)	395, 515, 918, 1093
LweI	GCATC	3 cut(s)	163, 753, 955
MaeI	CTAG	3 cut(s)	593, 702, 957
MaeII	ACGT	2 cut(s)	1055, 1117
MaeIII	GTNAC	4 cut(s)	206, 1051, 1056, 1118
MalI	GATC	6 cut(s)	71, 296, 486, 498, 753, 843
MboI	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
MboII	GAAGA	5 cut(s)	101, 151, 245, 622, 709
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	8 cut(s)	177, 242, 361, 441, 552, 635, 803, 862
MlyI	GAGTC	2 cut(s)	726, 982
MmeI	TCCRAC	2 cut(s)	203, 860
MseI	TTAA	7 cut(s)	117, 164, 182, 545, 555, 650, 1008
MslI	CAYNNNNRTG	2 cut(s)	470, 671
MspCI	CTTAAG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	462, 912, 1022, 1152
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
NlaIII	CATG	4 cut(s)	173, 814, 964, 1032
NmuCI	GTSAC	3 cut(s)	206, 1051, 1118
NspI	RCATGY	2 cut(s)	814, 1032
NspV	TTCGAA	2 cut(s)	216, 633
PaeI	GCATGC	1 cut(s)	1032
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	357, 974, 1096
PkrI	GCNGC	5 cut(s)	410, 505, 908, 1027, 1083
Ple19I	CGATCG	1 cut(s)	844
PleI	GAGTC	2 cut(s)	725, 982
PpsI	GAGTC	2 cut(s)	725, 982
PscI	ACATGT	1 cut(s)	810
PsiI	TTATAA	3 cut(s)	425, 861, 867
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	484
PvuI	CGATCG	1 cut(s)	844
RsaI	GTAC	2 cut(s)	1092, 1110
RsaNI	GTAC	2 cut(s)	1091, 1109
RseI	CAYNNNNRTG	2 cut(s)	470, 671
SaqAI	TTAA	7 cut(s)	117, 164, 182, 545, 555, 650, 1008
SatI	GCNGC	5 cut(s)	409, 504, 907, 1026, 1082
Sau3AI	GATC	6 cut(s)	69, 294, 484, 496, 751, 841
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	2 cut(s)	726, 982
SfaNI	GCATC	3 cut(s)	163, 753, 955
SfcI	CTRYAG	1 cut(s)	655
SfuI	TTCGAA	2 cut(s)	216, 633
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	2 cut(s)	470, 671
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	701
SphI	GCATGC	1 cut(s)	1032
Sse9I	AATT	8 cut(s)	177, 242, 361, 441, 552, 635, 803, 862
SsiI	CCGC	4 cut(s)	476, 1025, 1043, 1155
SspI	AATATT	1 cut(s)	1038
SspMI	CTAG	3 cut(s)	593, 702, 957
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	1 cut(s)	872
TaiI	ACGT	2 cut(s)	1058, 1120
TaqI	TCGA	8 cut(s)	216, 246, 285, 624, 633, 643, 732, 991
TasI	AATT	8 cut(s)	177, 242, 361, 441, 552, 635, 803, 862
TatI	WGTACW	1 cut(s)	1090
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	3 cut(s)	357, 974, 1096
Tru1I	TTAA	7 cut(s)	117, 164, 182, 545, 555, 650, 1008
Tru9I	TTAA	7 cut(s)	117, 164, 182, 545, 555, 650, 1008
TseFI	GTSAC	3 cut(s)	206, 1051, 1118
TseI	GCWGC	4 cut(s)	408, 503, 906, 1081
Tsp45I	GTSAC	3 cut(s)	206, 1051, 1118
TspDTI	ATGAA	4 cut(s)	17, 152, 655, 916
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	2 cut(s)	814, 1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XspI	CTAG	3 cut(s)	593, 702, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.