Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

18739235 .. 18741414

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG218600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTATTGGAACCAATCCGTCTGGCTCCAAGTCAGGCAAATCGTTTGGTCATGAAAAATTACGGTTTCGGAATGGTAGAGTGAGGCCTGTTTCATTTATTTGTTATAAAGAAGAGAAAGGACTCACATATGAATGCCAAGGACGAAGGGTGTACCAGATTGAGTATGAGTCTAAAAAGATCAGTGATGCAGGAATCCTGCAGCTATTTGATGTGACTTCTTGTCCGGAAAAGAAAATGCACTTTATCTTCTATGAGAAATTTGACCGCTTTCTGTTCGGAAATTGGTTCAAGAATCACCCAAATGGGATGAGAGACCAGCATGGGGACATAAAACCTTGGGTTCAAGATTCAATTAGGGATGTCATGGTGACCATAAAGAACATGTTGAATCGTCAGTTACTCCATTCAGGACTAGGAGATTTGAAGAACTATGTTATTGCAGAAGGCAAGATCAAGATAATTAACATCATGAGTAGTTGGGAGGACTTGGTCGACCCTCAAGAATTGAAAAATGGAGAAGACGTTCAAACTTTGGTGGGCAAGAGACGCTTAAAGTCTCTCATAAGGAAAGAGATAACAAGTGTAAAGAAACTATGGCAAACTCTTTTGAAATCTGATGATGCCTGGCCTGAGAGAGATTACTTCCTCAGTATCTTTGATCAGAACCTACACCCGTGGGATGTTCACATAGAGAAAATAATTACTCACCCATTCTTGAAGACTTCGGAAGGGAGGGTCAAGTATTTTTCAGAGATACATCGTCAGCATATGACTCATTCAATTCCAAGACCTGATGTATTCTACAAGGCCATAAGAAATCATTTTGGTAAGTATCGTGGCACCATAAACTCTGTGAATATGAGCCGTCAGTTGAAAGCACTCTTCACTTCTGATACATATGGCAAACCCATTACTTATGGCAACACCATATTGGACCTTTTGCGGTTCTTAAGGAATGCTTACGAGCACCGTGGTGCAGACCTTCCTGTGTGTGACTTGGATAGAAAGATTAGAAAGCATTGGCCGGGCTTTCTCGAGAAACTTCATGAGAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

353

Amino Acids

41.55

Weight (kDa)

9.54

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	268, 946
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflII	CTTAAG	1 cut(s)	952
AflIII	ACRYGT	1 cut(s)	384
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	626
AleI	CACNNNNGTG	1 cut(s)	975
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	3 cut(s)	309, 541, 564
Ama87I	CYCGRG	1 cut(s)	1037
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	4 cut(s)	86, 629, 810, 1025
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	937
AsuC2I	CCSGG	1 cut(s)	1029
AsuHPI	GGTGA	3 cut(s)	290, 382, 701
AvaI	CYCGRG	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	528, 728
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	1029
BcoDI	GTCTC	3 cut(s)	309, 541, 564
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	952
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	628, 1029
Bme18I	GGWCC	1 cut(s)	937
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	1037
BmgT120I	GGNCC	1 cut(s)	937
BmiI	GGNNCC	3 cut(s)	13, 28, 844
BmrFI	CCNGG	2 cut(s)	628, 1029
BmsI	GCATC	2 cut(s)	178, 613
BpiI	GAAGAC	2 cut(s)	528, 728
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	1029
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	139, 338, 677, 973
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	139, 338, 677, 973
BseGI	GGATG	3 cut(s)	315, 367, 688
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	624, 664
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	999
BshFI	GGCC	4 cut(s)	88, 631, 812, 1027
BshNI	GGYRCC	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	1037
BsiSI	CCGG	2 cut(s)	227, 1028
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	3 cut(s)	309, 541, 564
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	2 cut(s)	140, 964
BsnI	GGCC	4 cut(s)	88, 631, 812, 1027
Bso31I	GGTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	1037
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	180, 453, 661
BspACI	CCGC	2 cut(s)	268, 946
BspANI	GGCC	4 cut(s)	88, 631, 812, 1027
BspCNI	CTCAG	2 cut(s)	625, 663
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	3 cut(s)	52, 471, 1048
BspLI	GGNNCC	3 cut(s)	13, 28, 844
BspMAI	CTGCAG	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	842
BspTI	CTTAAG	1 cut(s)	952
BspTNI	GGTCTC	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	139, 338, 677, 973
BssMI	GATC	3 cut(s)	180, 453, 661
BssT1I	CCWWGG	2 cut(s)	139, 338
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	2 cut(s)	66, 974
Bst6I	CTCTTC	2 cut(s)	108, 890
BstAFI	CTTAAG	1 cut(s)	952
BstDEI	CTNAG	2 cut(s)	633, 650
BstDSI	CCRYGG	2 cut(s)	677, 973
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	315, 367, 688
BstKTI	GATC	3 cut(s)	183, 456, 664
BstMAI	GTCTC	3 cut(s)	309, 541, 564
BstMBI	GATC	3 cut(s)	180, 453, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	626, 1027
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	528, 728
BsuRI	GGCC	4 cut(s)	88, 631, 812, 1027
BtgI	CCRYGG	2 cut(s)	677, 973
BtsCI	GGATG	3 cut(s)	315, 367, 688
BtsIMutI	CAGTG	1 cut(s)	190
CciI	TCATGA	3 cut(s)	52, 471, 1048
Cfr13I	GGNCC	1 cut(s)	937
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	6 cut(s)	53, 323, 367, 385, 472, 1049
CviJI	RGCY	8 cut(s)	27, 88, 205, 631, 812, 867, 1027, 1032
CviKI_1	RGCY	8 cut(s)	27, 88, 205, 631, 812, 867, 1027, 1032
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	633, 650
DpnI	GATC	3 cut(s)	182, 455, 663
DpnII	GATC	3 cut(s)	180, 453, 661
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	108, 890
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	108, 890
Eco130I	CCWWGG	2 cut(s)	139, 338
Eco147I	AGGCCT	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	937
Eco88I	CYCGRG	1 cut(s)	1037
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	139, 338
ErhI	CCWWGG	2 cut(s)	139, 338
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
FalI	AAGNNNNNCTT	4 cut(s)	536, 568, 946, 978
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	6 cut(s)	52, 322, 366, 384, 471, 1048
FauNDI	CATATG	3 cut(s)	130, 771, 901
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	3 cut(s)	322, 374, 695
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	88, 631, 812, 1027
HapII	CCGG	2 cut(s)	227, 1028
HgaI	GACGC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	8 cut(s)	123, 170, 195, 295, 350, 391, 775, 1054
HpaII	CCGG	2 cut(s)	227, 1028
HphI	GGTGA	3 cut(s)	290, 382, 701
Hpy166II	GTNNAC	3 cut(s)	154, 496, 688
Hpy188I	TCNGA	7 cut(s)	72, 281, 619, 666, 730, 754, 895
Hpy8I	GTNNAC	3 cut(s)	154, 496, 688
HpyAV	CCTTC	4 cut(s)	141, 440, 725, 995
HpyCH4III	ACNGT	2 cut(s)	66, 974
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	5 cut(s)	191, 202, 241, 443, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpyF3I	CTNAG	2 cut(s)	633, 650
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	180, 453, 661
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	178, 613
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	4 cut(s)	214, 370, 399, 995
MalI	GATC	3 cut(s)	182, 455, 663
MboI	GATC	3 cut(s)	180, 453, 661
MboII	GAAGA	6 cut(s)	125, 241, 439, 533, 733, 877
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
MlyI	GAGTC	3 cut(s)	117, 179, 769
MnlI	CCTC	5 cut(s)	78, 478, 510, 659, 729
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	3 cut(s)	465, 554, 953
MslI	CAYNNNNRTG	3 cut(s)	133, 303, 975
MspCI	CTTAAG	1 cut(s)	952
MspI	CCGG	2 cut(s)	227, 1028
MspR9I	CCNGG	2 cut(s)	628, 1029
Mva1269I	GAATGC	2 cut(s)	140, 964
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	1029
NdeI	CATATG	3 cut(s)	130, 771, 901
NdeII	GATC	3 cut(s)	180, 453, 661
NlaIII	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
NlaIV	GGNNCC	3 cut(s)	13, 28, 844
NmuCI	GTSAC	3 cut(s)	214, 370, 995
NspI	RCATGY	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	975
PaeR7I	CTCGAG	1 cut(s)	1037
PagI	TCATGA	3 cut(s)	52, 471, 1048
PceI	AGGCCT	1 cut(s)	88
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	2 cut(s)	140, 964
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	195, 295, 350, 391, 1054
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	3 cut(s)	117, 178, 769
PpsI	GAGTC	3 cut(s)	117, 178, 769
PscI	ACATGT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	13, 28, 844
PspPI	GGNCC	1 cut(s)	937
PstI	CTGCAG	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	3 cut(s)	133, 303, 975
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	465, 554, 953
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	180, 453, 661
Sau96I	GGNCC	1 cut(s)	937
SchI	GAGTC	3 cut(s)	117, 179, 769
ScrFI	CCNGG	2 cut(s)	628, 1029
SduI	GDGCHC	1 cut(s)	972
SetI	ASST	7 cut(s)	207, 340, 528, 672, 796, 942, 987
SfaNI	GCATC	2 cut(s)	178, 613
SfcI	CTRYAG	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	1037
SinI	GGWCC	1 cut(s)	937
SlaI	CTCGAG	1 cut(s)	1037
SmiMI	CAYNNNNRTG	3 cut(s)	133, 303, 975
SmlI	CTYRAG	3 cut(s)	501, 952, 1037
SmoI	CTYRAG	3 cut(s)	501, 952, 1037
Sse9I	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	268, 946
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	626, 1027
StyI	CCWWGG	2 cut(s)	139, 338
TaaI	ACNGT	2 cut(s)	66, 974
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	495, 1038
TasI	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
TfiI	GAWTC	5 cut(s)	195, 295, 350, 391, 1054
Tru1I	TTAA	3 cut(s)	465, 554, 953
Tru9I	TTAA	3 cut(s)	465, 554, 953
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	3 cut(s)	214, 370, 995
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	3 cut(s)	214, 370, 995
TspDTI	ATGAA	4 cut(s)	69, 84, 147, 1037
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	952
VpaK11BI	GGWCC	1 cut(s)	937
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	1037
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.