Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

26609015 .. 26613895

Gene Structure 4881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTATTGTGAGGATATTTCCAAGTACATTATTTGCTACGACCGGTTCCACTGCTCTTTAAACGATTGGCTACCAAGGTGGTTCAATTTCAATTCTGTTAAAGATGCATATGGCTTGCCTCACTCAGATATTAAGACAGAGATCAGCAAGATGTTGAACGCTGTGAATAACATTCACAGGAGGGGACTGCTTCATCTATCACTCTCTGACATCTCTAGTTATGTTGTTATTGACAACAAATGGTATATTATCAATATTCGTGGCAGTCTTGAAAAATCCGATCCAAAATCAAAGTCGAAGGTCATAAGTGATTTTTGTGATTTTCGTGATATGCTTAAGAATTATGTTCTCTTACACCCTTCATGGCCTGAAAGGGAATACTTTTTCAACACATTTGCTCGGACCAATATTTCTCCCAACCGACTTGTTCCAATTCTATTGGATCATGTCTTCACAAAATCTTCACGTGATCGACTTCAAATGTTTTCAGAGATTTATCACGGATGGATGGACCATAATCGCAACTGCTCTATGCTATTCAATGCCATTCGAAACGGATTGTTCGACCAATATACAAATGGAGGATGGGATAAGGATAGGGTTCATATGGGCTATGTTTTGTCTGAAATTTATAATCATAGTTACTATGATGGGCATAAAATAACAAGCTTGATGAAGTTTTGCCGCAATGTTTATGAGCATTATTACCAATATGGTGGTAATGTAAATCTCATTGAGAAAGAGGTGAGACAGTTATGGCCAGGATTTTTGGAAAAGCTGCTTCATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

264

Amino Acids

31.67

Weight (kDa)

8.4

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	2 cut(s)	275, 450
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	1 cut(s)	627
AcvI	CACGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	335
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	7 cut(s)	85, 91, 157, 272, 388, 479, 541
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	2 cut(s)	669, 778
AluI	AGCT	2 cut(s)	669, 778
Alw26I	GTCTC	1 cut(s)	742
AlwI	GGATC	2 cut(s)	275, 450
AoxI	GGCC	2 cut(s)	365, 758
ApeKI	GCWGC	1 cut(s)	778
ApoI	RAATTY	1 cut(s)	627
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AsiGI	ACCGGT	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	402, 511
AsuHPI	GGTGA	1 cut(s)	757
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	402, 511
BalI	TGGCCA	1 cut(s)	760
BbrPI	CACGTG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	4 cut(s)	498, 502, 579, 644
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	685, 779
BlsI	GCNGC	2 cut(s)	686, 780
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	2 cut(s)	402, 511
BmgT120I	GGNCC	2 cut(s)	402, 511
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	442
Bpu14I	TTCGAA	1 cut(s)	550
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	3 cut(s)	509, 513, 590
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	765
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	367, 760
BshTI	ACCGGT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	367, 760
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	141, 280, 442, 469
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	2 cut(s)	367, 760
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	275, 450
BspT104I	TTCGAA	1 cut(s)	550
BspTI	CTTAAG	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	141, 280, 442, 469
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	509, 513, 590
BstKTI	GATC	4 cut(s)	144, 283, 445, 472
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	4 cut(s)	141, 280, 442, 469
BstMCI	CGRYCG	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	762
BstSCI	CCNGG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	765
BstV2I	GAAGAC	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	367, 760
BtsCI	GGATG	3 cut(s)	509, 513, 590
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	402, 511
Csp6I	GTAC	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	42
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	363, 446
CviJI	RGCY	7 cut(s)	70, 114, 367, 612, 669, 760, 778
CviKI_1	RGCY	7 cut(s)	70, 114, 367, 612, 669, 760, 778
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	4 cut(s)	143, 282, 444, 471
DpnII	GATC	4 cut(s)	141, 280, 442, 469
DraI	TTTAAA	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	402, 511
Eco72I	CACGTG	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	366, 449
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	362, 445
FauNDI	CATATG	2 cut(s)	109, 606
Fnu4HI	GCNGC	2 cut(s)	685, 779
FokI	GGATG	3 cut(s)	516, 520, 597
Fsp4HI	GCNGC	2 cut(s)	685, 779
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	685, 779
HaeIII	GGCC	2 cut(s)	367, 760
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	2 cut(s)	366, 449
HindIII	AAGCTT	1 cut(s)	667
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	757
Hpy188I	TCNGA	6 cut(s)	127, 208, 280, 402, 490, 625
Hpy188III	TCNNGA	2 cut(s)	269, 326
HpyAV	CCTTC	2 cut(s)	292, 369
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	2 cut(s)	366, 449
Kzo9I	GATC	4 cut(s)	141, 280, 442, 469
LpnPI	CCDG	5 cut(s)	56, 163, 381, 747, 774
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	4 cut(s)	143, 282, 444, 471
MboI	GATC	4 cut(s)	141, 280, 442, 469
MboII	GAAGA	2 cut(s)	442, 453
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	5 cut(s)	85, 91, 340, 432, 627
MluNI	TGGCCA	1 cut(s)	760
MnlI	CCTC	5 cut(s)	4, 129, 174, 575, 736
Mox20I	TGGCCA	1 cut(s)	760
Mph1103I	ATGCAT	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	4 cut(s)	59, 99, 132, 336
Msp20I	TGGCCA	1 cut(s)	760
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	762
NdeI	CATATG	2 cut(s)	109, 606
NdeII	GATC	4 cut(s)	141, 280, 442, 469
NlaIII	CATG	2 cut(s)	366, 449
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	686, 780
PmaCI	CACGTG	1 cut(s)	467
PmlI	CACGTG	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	760
PspCI	CACGTG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	402, 511
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	59, 99, 132, 336
SatI	GCNGC	2 cut(s)	685, 779
Sau3AI	GATC	4 cut(s)	141, 280, 442, 469
Sau96I	GGNCC	2 cut(s)	402, 511
ScrFI	CCNGG	1 cut(s)	762
SetI	ASST	6 cut(s)	80, 303, 469, 671, 747, 780
SfaNI	GCATC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	2 cut(s)	402, 511
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	85, 91, 340, 432, 627
SsiI	CCGC	1 cut(s)	685
SspI	AATATT	2 cut(s)	256, 409
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	296, 472, 550, 564
TasI	AATT	5 cut(s)	85, 91, 340, 432, 627
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	687
Tru1I	TTAA	4 cut(s)	59, 99, 132, 336
Tru9I	TTAA	4 cut(s)	59, 99, 132, 336
TscAI	CASTG	1 cut(s)	56
TseI	GCWGC	1 cut(s)	778
TspDTI	ATGAA	5 cut(s)	182, 351, 593, 689, 773
TspGWI	ACGGA	2 cut(s)	516, 570
TspRI	CASTG	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	402, 511
XapI	RAATTY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.