FvH4_7g27711

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001767
Physical Location & Seq
Forward (+)
20668920 .. 20669946
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27711.t1

Sequence Viewer

Length: 858 bp
ATGGCTGATGATCCCGGAATCTTGAAACCTTATTTCCTCACTTATTATGAGCTAAAGAAAATTTGGATTTTGTGCTACGACAAATTTGACAGTCTCCTCAGTGAAGATGTATCACAAATTGTTCTAACAGAAAAAAACATGGGCGACTCAATTAGGAAGCTTCTAGAGACTATAAAATACATACACAAACGTCGAGTTTTTCATGGTGCTCTAAAAGAAAGATGCAGCTATGTGGTTATTTCAGGTCACATCAAAATTATTTTTGGTAGCAGCTTGCGCACTGGGGATGACTTGATGAAAATATGGAAGAATCATTCCTATGAAGATCCAGAAGAAGTCAAAAGTACAAAGATAAAAGATTTAAAAGATTTTCGGGACTTGTTAAAGGACGTTATATCGCAGCTCGGGCTTGATTGGGAGGACAAAGATTCTTTTTTTCAGTTTTTTGAGAGGAGCATTGAATACTGGTCTGGCTACGAAGGCTTTGTGAATCACCTTATCGATCATCCCTCGCTGAAGAAATGCGATAAAAGGAATGAATATCTATTCAAAATAGAGCAGTCCATCAAAACGAAATGTCTTCGCGATTCTAAAACATTCAAGAAAAAATTGGAAGATGAAGAGTTCACTGCTAAGTATTCAAAGTGGAATGAAGATGAAAAACTGAGTCAGGCTCCTCGGTTGAAAGAAGTCTACTATAAGGAGGGTGTTACCTATCAAGGGACTGTAAGGGATCTCATCAGATTTCTTGCAAATGCATATGTGCACTATCGTTCAAAAAACAAGGAAGAAGACTTCGACCATGACGTCCGGAAATTATATCCCGATTTCTTGAATCTTATGCATTGTTACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

286

Amino Acids

34.18

Weight (kDa)

7.62

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 810
Acc16I TGCGCA 1 cut(s) 278
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 810
AclWI GGATC 3 cut(s) 5, 320, 741
AcsI RAATTY 2 cut(s) 60, 83
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 807
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 720
AgsI TTSAA 8 cut(s) 25, 461, 550, 601, 642, 685, 777, 835
AluBI AGCT 5 cut(s) 52, 160, 228, 273, 403
AluI AGCT 5 cut(s) 52, 160, 228, 273, 403
Alw21I GWGCWC 2 cut(s) 211, 768
Alw26I GTCTC 2 cut(s) 98, 161
Alw44I GTGCAC 1 cut(s) 764
AlwI GGATC 3 cut(s) 5, 320, 741
Ama87I CYCGRG 1 cut(s) 404
Aor13HI TCCGGA 1 cut(s) 810
ApaLI GTGCAC 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 225, 270, 400
ApoI RAATTY 2 cut(s) 60, 83
AspLEI GCGC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 768
BbsI GAAGAC 2 cut(s) 572, 798
Bbv12I GWGCWC 2 cut(s) 211, 768
BbvI GCAGC 3 cut(s) 237, 282, 412
BccI CCATC 1 cut(s) 572
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 98, 161
BfaI CTAG 1 cut(s) 164
BisI GCNGC 3 cut(s) 226, 271, 401
BlsI GCNGC 3 cut(s) 227, 272, 402
Bme1390I CCNGG 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 675
BmrFI CCNGG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 572, 798
BplI GAGNNNNNCTC 2 cut(s) 658, 690
BpuMI CCSGG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 677
BsaWI WCCGGW 1 cut(s) 810
Bsc4I CCNNNNNNNGG 1 cut(s) 720
Bse1I ACTGG 2 cut(s) 286, 470
BseAI TCCGGA 1 cut(s) 810
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 2 cut(s) 292, 505
BseLI CCNNNNNNNGG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 112, 656
BseNI ACTGG 2 cut(s) 286, 470
BseRI GAGGAG 3 cut(s) 86, 466, 666
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 3 cut(s) 237, 282, 412
Bsh1236I CGCG 1 cut(s) 585
BshVI ATCGAT 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 211, 768
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 2 cut(s) 15, 811
BslFI GGGAC 2 cut(s) 389, 736
BslI CCNNNNNNNGG 1 cut(s) 720
BsmAI GTCTC 2 cut(s) 98, 161
BsmFI GGGAC 2 cut(s) 389, 736
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 211, 768
Bsp13I TCCGGA 1 cut(s) 810
Bsp143I GATC 4 cut(s) 10, 325, 502, 733
Bsp68I TCGCGA 1 cut(s) 585
BspCNI CTCAG 2 cut(s) 111, 657
BspDI ATCGAT 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 810
BspFNI CGCG 1 cut(s) 585
BspLI GGNNCC 1 cut(s) 675
BspPI GGATC 3 cut(s) 5, 320, 741
BsrI ACTGG 2 cut(s) 286, 470
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 4 cut(s) 10, 325, 502, 733
BssNI GRCGYC 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 92, 727
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 98, 633, 665
BstF5I GGATG 2 cut(s) 292, 505
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 4 cut(s) 13, 328, 505, 736
BstMAI GTCTC 2 cut(s) 98, 161
BstMBI GATC 4 cut(s) 10, 325, 502, 733
BstMWI GCNNNNNNNGC 3 cut(s) 276, 406, 480
BstSCI CCNGG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 768
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 237, 282, 412
BstV2I GAAGAC 2 cut(s) 572, 798
BstX2I RGATCY 2 cut(s) 325, 733
BstYI RGATCY 2 cut(s) 325, 733
Bsu15I ATCGAT 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 501
BtsCI GGATG 2 cut(s) 292, 505
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 3 cut(s) 106, 279, 627
BtuMI TCGCGA 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 279
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 139, 203, 803
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 98, 633, 665
DpnI GATC 4 cut(s) 12, 327, 504, 735
DpnII GATC 4 cut(s) 10, 325, 502, 733
DraI TTTAAA 1 cut(s) 363
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 404
EcoT22I ATGCAT 2 cut(s) 760, 846
FaeI CATG 3 cut(s) 142, 206, 806
FaqI GGGAC 2 cut(s) 389, 736
FatI CATG 3 cut(s) 138, 202, 802
FauNDI CATATG 1 cut(s) 760
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 226, 271, 401
FokI GGATG 2 cut(s) 299, 492
Fsp4HI GCNGC 3 cut(s) 226, 271, 401
FspBI CTAG 1 cut(s) 164
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 226, 271, 401
HapII CCGG 2 cut(s) 15, 811
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 807
Hin1II CATG 3 cut(s) 142, 206, 806
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 8 cut(s) 18, 146, 310, 428, 490, 587, 667, 835
HpaII CCGG 2 cut(s) 15, 811
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 3 cut(s) 627, 694, 766
Hpy188I TCNGA 1 cut(s) 743
Hpy188III TCNNGA 9 cut(s) 22, 164, 329, 374, 584, 601, 811, 824, 832
Hpy8I GTNNAC 3 cut(s) 627, 694, 766
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 2 cut(s) 92, 727
HpyCH4IV ACGT 3 cut(s) 190, 390, 807
HpyCH4V TGCA 5 cut(s) 225, 752, 758, 766, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 406, 480
HpyF3I CTNAG 3 cut(s) 98, 633, 665
HpySE526I ACGT 3 cut(s) 190, 390, 807
Hsp92I GRCGYC 1 cut(s) 807
Hsp92II CATG 3 cut(s) 142, 206, 806
HspAI GCGC 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 810
Kzo9I GATC 4 cut(s) 10, 325, 502, 733
LmnI GCTCC 2 cut(s) 453, 679
LpnPI CCDG 8 cut(s) 28, 228, 267, 342, 451, 456, 656, 824
Lsp1109I GCAGC 3 cut(s) 237, 282, 412
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 164
MaeII ACGT 3 cut(s) 190, 390, 807
MaeIII GTNAC 3 cut(s) 245, 709, 848
MalI GATC 4 cut(s) 12, 327, 504, 735
MboI GATC 4 cut(s) 10, 325, 502, 733
MflI RGATCY 2 cut(s) 325, 733
MhlI GDGCHC 2 cut(s) 211, 768
MluCI AATT 7 cut(s) 60, 83, 117, 150, 255, 608, 815
MlyI GAGTC 2 cut(s) 140, 676
MnlI CCTC 7 cut(s) 47, 107, 412, 444, 520, 687, 697
Mph1103I ATGCAT 2 cut(s) 760, 846
MroI TCCGGA 1 cut(s) 810
MseI TTAA 2 cut(s) 362, 383
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 2 cut(s) 15, 811
MspR9I CCNGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 276, 406, 480
NciI CCSGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 760
NdeII GATC 4 cut(s) 10, 325, 502, 733
NlaIII CATG 3 cut(s) 142, 206, 806
NlaIV GGNNCC 1 cut(s) 675
NmuCI GTSAC 1 cut(s) 245
NruI TCGCGA 1 cut(s) 585
NsbI TGCGCA 1 cut(s) 278
NsiI ATGCAT 2 cut(s) 760, 846
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PfeI GAWTC 6 cut(s) 18, 310, 428, 490, 587, 835
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 3 cut(s) 227, 272, 402
PleI GAGTC 2 cut(s) 140, 675
PpsI GAGTC 2 cut(s) 140, 675
PspN4I GGNNCC 1 cut(s) 675
PsuI RGATCY 2 cut(s) 325, 733
RruI TCGCGA 1 cut(s) 585
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 362, 383
SatI GCNGC 3 cut(s) 226, 271, 401
Sau3AI GATC 4 cut(s) 10, 325, 502, 733
SchI GAGTC 2 cut(s) 140, 676
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 2 cut(s) 211, 768
SfaNI GCATC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 7 cut(s) 60, 83, 117, 150, 255, 608, 815
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 2 cut(s) 92, 727
TaiI ACGT 3 cut(s) 193, 393, 810
TaqI TCGA 3 cut(s) 193, 501, 798
TasI AATT 7 cut(s) 60, 83, 117, 150, 255, 608, 815
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 6 cut(s) 18, 310, 428, 490, 587, 835
Tru1I TTAA 2 cut(s) 362, 383
Tru9I TTAA 2 cut(s) 362, 383
TscAI CASTG 3 cut(s) 106, 286, 634
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 225, 270, 400
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 7 cut(s) 191, 311, 336, 552, 633, 666, 672
TspRI CASTG 3 cut(s) 106, 286, 634
VneI GTGCAC 1 cut(s) 764
XapI RAATTY 2 cut(s) 60, 83
XbaI TCTAGA 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 808
Zsp2I ATGCAT 2 cut(s) 760, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.