Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Reverse (-)

36428706 .. 36431821

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATCTCCAACATCCAAACTGCGCCGGAAGTTGCGCCGGAAGAGGTTCTCCTTACGAAAATATTACAGAAAAAGCTCGAGAATACCGATCAGAATACCGTTATCGGAGCCTCCATAATGGAGTACCGGCTTCATTACATCAGTGGGAGCCCTTATTACAACGGCACAATTATTTTTCAGAACGGTGACACAAAAGAGGTGTCTTTTATTCCCTTTGATAAAGCAGAAAGCAAGAAAGTTCGTGATATATACACTTATAGCACAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTACATTTCGTATTGTGAAGATATTTGCGAGCACATTATTTGCTATGACCGATTCCACTACTCTTTAAGATATTGGCTGCCAAGGTGGAACAAATTCAATAGTGTTAAAGATGCATATGGCTTGCCTCACTCAGTAATTAAGACACAAATCAGCAAGCTATTGAAATCTGTGAATAACATTCACAAGAGCGGATTGCTTCACCTATCACTCTCTGATATCTCTAACTATGTTGTTATTGACAACAATTGGTATATTATTAATGTCGGTGGCAATCTTAAGACTCTTAACCTATCCAATAGACAGCAGATGGTCATAAAGGACTTCCAAAATTTTGGTAACATGCTTGAGAAAAATGTTCTCTTAGACACTTCATGGCGAGAAAGAAATGACTTCTTACACACATTTGCTAATAATGTTTCTCCTAATCGACTTGTCCTGATTCTATTGGACAATGTATTCACAAAATCTTCATATGATCGACTTCAAATGTTTTCAAAAATTCATCACGAATGGAAGGACCGTAGACACAATTGCAACATGTTAAATAATGCCATTTCAAATGGAGTGTTCAACTGCTATATTACTAATGGAGGATGGGACAAGGTTCCCATGGGCAATGTTTTGTCTCAAGTTTACCAGTTTTCCAACAAGAAGTACGATGGACAACAAATAACGAGCTTATTGAAGTTTTGCCGCAATGTTTTCGAACATTATTACCAATATACTGGTAATGTAAAGATCATTGAGAATGAGATGAGACAATTATGGCCAGGATTTTTGGAAAGACTACTTTATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

43.19

Weight (kDa)

8.74

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	2 cut(s)	486, 991
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	3 cut(s)	389, 625, 795
AfaI	GTAC	3 cut(s)	125, 299, 953
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	7 cut(s)	394, 460, 782, 792, 855, 868, 982
AjnI	CCWGG	2 cut(s)	293, 1066
AluBI	AGCT	3 cut(s)	76, 454, 975
AluI	AGCT	3 cut(s)	76, 454, 975
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	927, 1048
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	290, 1064
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	3 cut(s)	389, 625, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	555
Asp700I	GAANNNNTTC	3 cut(s)	45, 282, 389
AspLEI	GCGC	2 cut(s)	25, 37
AspS9I	GGNCC	2 cut(s)	291, 814
AsuHPI	GGTGA	2 cut(s)	197, 488
AsuII	TTCGAA	1 cut(s)	1002
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	1066
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	3 cut(s)	598, 885, 950
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	982, 1016
BciT130I	CCWGG	2 cut(s)	295, 1068
BcoDI	GTCTC	2 cut(s)	927, 1048
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	2 cut(s)	374, 991
BlsI	GCNGC	2 cut(s)	375, 992
Bme1390I	CCNGG	2 cut(s)	295, 1068
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	291, 814
BmiI	GGNNCC	3 cut(s)	109, 149, 903
BmrFI	CCNGG	2 cut(s)	295, 1068
BmsI	GCATC	1 cut(s)	397
Bpu14I	TTCGAA	1 cut(s)	1002
BpuEI	CTTGAG	2 cut(s)	662, 909
BsaJI	CCNNGG	3 cut(s)	293, 377, 906
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	934, 1027
Bse3DI	GCAATG	2 cut(s)	919, 1000
BseBI	CCWGG	2 cut(s)	295, 1068
BseDI	CCNNGG	3 cut(s)	293, 377, 906
BseGI	GGATG	2 cut(s)	12, 896
BseMI	GCAATG	2 cut(s)	919, 1000
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	934, 1027
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	2 cut(s)	292, 1066
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	26, 38, 127
BslFI	GGGAC	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	927, 1048
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	292, 1066
BsoBI	CYCGRG	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	1002
Bsp1286I	GDGCHC	2 cut(s)	152, 330
Bsp143I	GATC	4 cut(s)	3, 88, 772, 1035
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	2 cut(s)	486, 991
BspANI	GGCC	2 cut(s)	292, 1066
BspCNI	CTCAG	1 cut(s)	440
BspLI	GGNNCC	3 cut(s)	109, 149, 903
BspT104I	TTCGAA	1 cut(s)	1002
BspTI	CTTAAG	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	919, 1000
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	934, 1027
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	293, 377, 906
BssMI	GATC	4 cut(s)	3, 88, 772, 1035
BssT1I	CCWWGG	2 cut(s)	377, 906
Bst2UI	CCWGG	2 cut(s)	295, 1068
Bst4CI	ACNGT	3 cut(s)	100, 185, 818
Bst6I	CTCTTC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	1002
BstC8I	GCNNGC	3 cut(s)	326, 419, 452
BstDEI	CTNAG	3 cut(s)	287, 427, 658
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	2 cut(s)	12, 896
BstHHI	GCGC	2 cut(s)	25, 37
BstKTI	GATC	4 cut(s)	6, 91, 775, 1038
BstMAI	GTCTC	2 cut(s)	927, 1048
BstMBI	GATC	4 cut(s)	3, 88, 772, 1035
BstNI	CCWGG	2 cut(s)	295, 1068
BstNSI	RCATGY	2 cut(s)	640, 838
BstSCI	CCNGG	2 cut(s)	293, 1066
BstV1I	GCAGC	1 cut(s)	360
BstXI	CCANNNNNNTGG	2 cut(s)	629, 1022
BsuRI	GGCC	2 cut(s)	292, 1066
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	12, 896
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	326, 419, 452
CfoI	GCGC	2 cut(s)	25, 37
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	291, 814
Csp6I	GTAC	3 cut(s)	124, 298, 952
CviAII	CATG	4 cut(s)	637, 669, 835, 907
CviQI	GTAC	3 cut(s)	124, 298, 952
DdeI	CTNAG	3 cut(s)	287, 427, 658
DpnI	GATC	4 cut(s)	5, 90, 774, 1037
DpnII	GATC	4 cut(s)	3, 88, 772, 1035
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	377, 906
Eco24I	GRGCYC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	814
Eco88I	CYCGRG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	293, 1066
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	377, 906
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	2 cut(s)	377, 906
FaeI	CATG	4 cut(s)	640, 672, 838, 910
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	4 cut(s)	636, 668, 834, 906
FauNDI	CATATG	2 cut(s)	412, 769
FblI	GTMKAC	1 cut(s)	820
Fnu4HI	GCNGC	2 cut(s)	374, 991
FokI	GGATG	1 cut(s)	903
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	374, 991
GlaI	GCGC	2 cut(s)	24, 36
GluI	GCNGC	2 cut(s)	374, 991
HaeIII	GGCC	2 cut(s)	292, 1066
HapII	CCGG	3 cut(s)	26, 38, 127
HhaI	GCGC	2 cut(s)	25, 37
Hin1II	CATG	4 cut(s)	640, 672, 838, 910
Hin6I	GCGC	2 cut(s)	23, 35
HinP1I	GCGC	2 cut(s)	23, 35
HinfI	GANTC	3 cut(s)	348, 577, 736
HpaII	CCGG	3 cut(s)	26, 38, 127
HphI	GGTGA	2 cut(s)	197, 488
Hpy166II	GTNNAC	2 cut(s)	821, 931
Hpy188I	TCNGA	4 cut(s)	93, 107, 180, 511
Hpy188III	TCNNGA	4 cut(s)	79, 242, 733, 803
Hpy8I	GTNNAC	2 cut(s)	821, 931
HpyAV	CCTTC	1 cut(s)	805
HpyCH4III	ACNGT	3 cut(s)	100, 185, 818
HpyCH4V	TGCA	2 cut(s)	410, 831
HpyF3I	CTNAG	3 cut(s)	287, 427, 658
Hsp92II	CATG	4 cut(s)	640, 672, 838, 910
HspAI	GCGC	2 cut(s)	23, 35
Kzo9I	GATC	4 cut(s)	3, 88, 772, 1035
LmnI	GCTCC	2 cut(s)	107, 147
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	185, 632
MalI	GATC	4 cut(s)	5, 90, 774, 1037
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	4 cut(s)	3, 88, 772, 1035
MboII	GAAGA	3 cut(s)	53, 326, 756
MfeI	CAATTG	2 cut(s)	541, 826
MhlI	GDGCHC	2 cut(s)	152, 330
MlsI	TGGCCA	1 cut(s)	1066
MluCI	AATT	8 cut(s)	168, 389, 432, 541, 625, 795, 826, 1058
MluNI	TGGCCA	1 cut(s)	1066
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	2 cut(s)	33, 966
MnlI	CCTC	5 cut(s)	37, 121, 190, 432, 881
Mox20I	TGGCCA	1 cut(s)	1066
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	3 cut(s)	45, 282, 389
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	7 cut(s)	362, 402, 435, 555, 573, 582, 839
Msp20I	TGGCCA	1 cut(s)	1066
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	3 cut(s)	26, 38, 127
MspR9I	CCNGG	2 cut(s)	295, 1068
MunI	CAATTG	2 cut(s)	541, 826
MvaI	CCWGG	2 cut(s)	295, 1068
NcoI	CCATGG	1 cut(s)	906
NdeI	CATATG	2 cut(s)	412, 769
NdeII	GATC	4 cut(s)	3, 88, 772, 1035
NlaIII	CATG	4 cut(s)	640, 672, 838, 910
NlaIV	GGNNCC	3 cut(s)	109, 149, 903
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	640, 838
NspV	TTCGAA	1 cut(s)	1002
PaeR7I	CTCGAG	1 cut(s)	77
PciI	ACATGT	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	3 cut(s)	45, 282, 389
PfeI	GAWTC	2 cut(s)	348, 736
PkrI	GCNGC	2 cut(s)	375, 992
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	293, 1066
PspGI	CCWGG	2 cut(s)	293, 1066
PspN4I	GGNNCC	3 cut(s)	109, 149, 903
PspPI	GGNCC	2 cut(s)	291, 814
RsaI	GTAC	3 cut(s)	125, 299, 953
RsaNI	GTAC	3 cut(s)	124, 298, 952
SaqAI	TTAA	7 cut(s)	362, 402, 435, 555, 573, 582, 839
SatI	GCNGC	2 cut(s)	374, 991
Sau3AI	GATC	4 cut(s)	3, 88, 772, 1035
Sau96I	GGNCC	2 cut(s)	291, 814
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	295, 1068
SduI	GDGCHC	2 cut(s)	152, 330
SetI	ASST	9 cut(s)	48, 78, 201, 383, 456, 501, 588, 903, 977
SfaNI	GCATC	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	1002
SinI	GGWCC	1 cut(s)	814
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	4 cut(s)	77, 572, 641, 924
SmoI	CTYRAG	4 cut(s)	77, 572, 641, 924
Sse9I	AATT	8 cut(s)	168, 389, 432, 541, 625, 795, 826, 1058
SsiI	CCGC	2 cut(s)	486, 991
SspI	AATATT	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	293, 1066
StyI	CCWWGG	2 cut(s)	377, 906
TaaI	ACNGT	3 cut(s)	100, 185, 818
TaqI	TCGA	4 cut(s)	78, 724, 775, 1002
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	8 cut(s)	168, 389, 432, 541, 625, 795, 826, 1058
TauI	GCSGC	1 cut(s)	993
TfiI	GAWTC	2 cut(s)	348, 736
Tru1I	TTAA	7 cut(s)	362, 402, 435, 555, 573, 582, 839
Tru9I	TTAA	7 cut(s)	362, 402, 435, 555, 573, 582, 839
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	122, 291, 657, 756, 788
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	3 cut(s)	389, 625, 795
XceI	RCATGY	2 cut(s)	640, 838
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	820
XmnI	GAANNNNTTC	3 cut(s)	45, 282, 389
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.