Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Forward (+)

33574985 .. 33583457

Gene Structure 8473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCAAGTGCCTCTAAAACTACACTTGACTGACTTGAGTCTCTTCGTCAAAACCCCCTGTATGCTGAAACTCTCTCCACCTAAACCCATGACCTCCAACATCCAAATTGCGCCGGAAGTTTTGCCGGAGGTTGCGCCGGAACAGGATTTCCTCACGAAAATACTACAGAAAAAGCTCGAGAATACCGATCCGAATACCGTTCTCGGAGCCTCCATAGTGGAGTACCAGCTTCATTACATCAGTGGGAGCCCTTGTTACAACGGCACAATTATTTTTCAGAACGGTGACACAAAAGACGTGTCTTTTATTCCCTTTGATACAGCAGAAGGCAAGAAAGTTCGTGATATATACACTTATAGCAAAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTACGTTTCGTATTGTGAGGATATTTCCCAACACATTATTTGCTATGACCGGTTCCACGACTTTTTAAAAGATTGGCTGCCAATGTGGAACGTAAAAAATAGTGTTAAAGATGCAAATGGTTTGCCTCACTCAGTAATTAAGACACAAATCAGCAAGCTATTGAAATCTGTGAATAACATTCACAAGAGCGGACTGCTTCACCTATCACTCTCTGATATCTCTAACTATGTTGTTATTAACAACAATTGGTATATTATCAATGTCGGTGGCAATCTTAACCAATCCAATAGACAATCGATGGTCATACAGGACTTTCAAAATTTTGGTAGCATGCTTAAGAATCATGTTCTCTTAGACACTTCATGGCAAGAAAGGAATGACTTCTTAAACATATTTGCTAGTACAAGTGTTTCTTCTTACCGACTTGCCCAGATTCTATTGGACAATGTATTCACAAAATCTTCATATGATCGACTTCAAATGTTTTCAAAGATTTATCATGGATGGAAGGCCCGTAGTCGCAATTGCAATATGTTAAAAAATGCCATTTTTTCTAAAAAATTTGATCACTATATTACTAACAATGGATGGGACAACGTTGATATGGGGAAGCTTTTGTGTAAAGTTTACTGGCATAATAACAGCATTGAGAAGAACAAGTACAATGGACAACAAATAATGAGCTTAATGAAGTTTTGCCGCAATGTTTTTGAACATTATCACCAATATGGTGGTAATGTAAATCTCATTGAGAAGAATGTGAGACAATTATGGCCCGGATTTTTGGAAACACTGCTTTATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

401

Amino Acids

46.71

Weight (kDa)

8.87

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	585
AciI	CCGC	2 cut(s)	585, 1096
AclI	AACGTT	1 cut(s)	993
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	715, 956
AfaI	GTAC	4 cut(s)	224, 398, 799, 1058
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	297
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	5 cut(s)	559, 713, 875, 885, 1109
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	392
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	5 cut(s)	175, 229, 553, 1009, 1080
AluI	AGCT	5 cut(s)	175, 229, 553, 1009, 1080
Alw26I	GTCTC	2 cut(s)	44, 1153
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	389, 906, 1169
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	2 cut(s)	715, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	444
Asp700I	GAANNNNTTC	2 cut(s)	381, 776
AspLEI	GCGC	2 cut(s)	112, 136
AspS9I	GGNCC	3 cut(s)	390, 907, 1170
AsuC2I	CCSGG	1 cut(s)	1173
AsuHPI	GGTGA	3 cut(s)	296, 587, 1109
AvaI	CYCGRG	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	1040, 1072
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	3 cut(s)	688, 894, 978
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	394
BclI	TGATCA	1 cut(s)	961
BcnI	CCSGG	1 cut(s)	1173
BcoDI	GTCTC	2 cut(s)	44, 1153
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	731
BisI	GCNGC	2 cut(s)	473, 1096
BlsI	GCNGC	2 cut(s)	474, 1097
Bme1390I	CCNGG	2 cut(s)	394, 1173
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	390, 907, 1170
BmiI	GGNNCC	3 cut(s)	208, 248, 449
BmrFI	CCNGG	2 cut(s)	394, 1173
BmsI	GCATC	1 cut(s)	496
BoxI	GACNNNNGTC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	1173
Bsa29I	ATCGAT	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bse118I	RCCGGY	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	1031
Bse3DI	GCAATG	1 cut(s)	1105
BseBI	CCWGG	1 cut(s)	394
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	3 cut(s)	99, 905, 989
BseMI	GCAATG	1 cut(s)	1105
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	1031
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	3 cut(s)	391, 908, 1171
BshTI	ACCGGT	1 cut(s)	444
BshVI	ATCGAT	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	113, 125, 137, 445, 1173
BslFI	GGGAC	1 cut(s)	1001
BsmAI	GTCTC	2 cut(s)	44, 1153
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	3 cut(s)	391, 908, 1171
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	187, 865, 961
BspACI	CCGC	2 cut(s)	585, 1096
BspANI	GGCC	3 cut(s)	391, 908, 1171
BspCNI	CTCAG	1 cut(s)	539
BspDI	ATCGAT	1 cut(s)	692
BspLI	GGNNCC	3 cut(s)	208, 248, 449
BspPI	GGATC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	1105
BsrFI	RCCGGY	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	1031
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	187, 865, 961
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	199, 284
Bst6I	CTCTTC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	551, 728
BstDEI	CTNAG	3 cut(s)	386, 526, 748
BstF5I	GGATG	3 cut(s)	99, 905, 989
BstHHI	GCGC	2 cut(s)	112, 136
BstKTI	GATC	3 cut(s)	190, 868, 964
BstMAI	GTCTC	2 cut(s)	44, 1153
BstMBI	GATC	3 cut(s)	187, 865, 961
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	730
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	392, 1171
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	1127
Bsu15I	ATCGAT	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	391, 908, 1171
BsuTUI	ATCGAT	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	99, 905, 989
BtsI	GCAGTG	1 cut(s)	1187
BtsIMutI	CAGTG	2 cut(s)	247, 1187
Cac8I	GCNNGC	2 cut(s)	551, 728
CfoI	GCGC	2 cut(s)	112, 136
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	3 cut(s)	390, 907, 1170
ClaI	ATCGAT	1 cut(s)	692
Csp6I	GTAC	4 cut(s)	223, 397, 798, 1057
CspAI	ACCGGT	1 cut(s)	444
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	5 cut(s)	88, 727, 740, 759, 896
CviQI	GTAC	4 cut(s)	223, 397, 798, 1057
DdeI	CTNAG	3 cut(s)	386, 526, 748
DpnI	GATC	3 cut(s)	189, 867, 963
DpnII	GATC	3 cut(s)	187, 865, 961
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	5 cut(s)	91, 730, 743, 762, 899
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	5 cut(s)	87, 726, 739, 758, 895
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	2 cut(s)	473, 1096
FokI	GGATG	3 cut(s)	86, 912, 996
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	473, 1096
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	2 cut(s)	111, 135
GluI	GCNGC	2 cut(s)	473, 1096
HaeIII	GGCC	3 cut(s)	391, 908, 1171
HapII	CCGG	5 cut(s)	113, 125, 137, 445, 1173
HhaI	GCGC	2 cut(s)	112, 136
Hin1II	CATG	5 cut(s)	91, 730, 743, 762, 899
Hin6I	GCGC	2 cut(s)	110, 134
HinP1I	GCGC	2 cut(s)	110, 134
HindIII	AAGCTT	1 cut(s)	1007
HinfI	GANTC	3 cut(s)	37, 736, 829
HpaII	CCGG	5 cut(s)	113, 125, 137, 445, 1173
HphI	GGTGA	3 cut(s)	296, 587, 1109
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	4 cut(s)	192, 206, 279, 610
Hpy188III	TCNNGA	3 cut(s)	154, 178, 341
Hpy8I	GTNNAC	1 cut(s)	1024
HpyAV	CCTTC	2 cut(s)	320, 898
HpyCH4III	ACNGT	2 cut(s)	199, 284
HpyCH4IV	ACGT	4 cut(s)	297, 399, 486, 993
HpyCH4V	TGCA	3 cut(s)	4, 509, 924
HpyF3I	CTNAG	3 cut(s)	386, 526, 748
HpySE526I	ACGT	4 cut(s)	297, 399, 486, 993
Hsp92II	CATG	5 cut(s)	91, 730, 743, 762, 899
HspAI	GCGC	2 cut(s)	110, 134
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	3 cut(s)	187, 865, 961
LmnI	GCTCC	2 cut(s)	206, 246
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	4 cut(s)	297, 399, 486, 993
MaeIII	GTNAC	2 cut(s)	254, 284
MalI	GATC	3 cut(s)	189, 867, 963
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	3 cut(s)	187, 865, 961
MboII	GAAGA	5 cut(s)	34, 801, 849, 1060, 1162
MfeI	CAATTG	2 cut(s)	640, 919
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	8 cut(s)	105, 267, 531, 640, 715, 919, 956, 1163
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	21, 103, 121, 161, 220, 406, 531
MroXI	GAANNNNTTC	2 cut(s)	381, 776
MseI	TTAA	9 cut(s)	461, 501, 534, 633, 672, 732, 782, 932, 1082
MslI	CAYNNNNRTG	1 cut(s)	1122
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	5 cut(s)	113, 125, 137, 445, 1173
MspR9I	CCNGG	2 cut(s)	394, 1173
MunI	CAATTG	2 cut(s)	640, 919
MvaI	CCWGG	1 cut(s)	394
NciI	CCSGG	1 cut(s)	1173
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	3 cut(s)	187, 865, 961
NlaIII	CATG	5 cut(s)	91, 730, 743, 762, 899
NlaIV	GGNNCC	3 cut(s)	208, 248, 449
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	381, 776
PfeI	GAWTC	2 cut(s)	736, 829
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	474, 1097
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PshAI	GACNNNNGTC	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	208, 248, 449
PspPI	GGNCC	3 cut(s)	390, 907, 1170
RsaI	GTAC	4 cut(s)	224, 398, 799, 1058
RsaNI	GTAC	4 cut(s)	223, 397, 798, 1057
RseI	CAYNNNNRTG	1 cut(s)	1122
SaqAI	TTAA	9 cut(s)	461, 501, 534, 633, 672, 732, 782, 932, 1082
SatI	GCNGC	2 cut(s)	473, 1096
Sau3AI	GATC	3 cut(s)	187, 865, 961
Sau96I	GGNCC	3 cut(s)	390, 907, 1170
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	394, 1173
SduI	GDGCHC	1 cut(s)	251
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	164
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	3 cut(s)	34, 176, 731
SmoI	CTYRAG	3 cut(s)	34, 176, 731
SphI	GCATGC	1 cut(s)	730
Sse9I	AATT	8 cut(s)	105, 267, 531, 640, 715, 919, 956, 1163
SsiI	CCGC	2 cut(s)	585, 1096
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	2 cut(s)	392, 1171
TaaI	ACNGT	2 cut(s)	199, 284
TaiI	ACGT	4 cut(s)	300, 402, 489, 996
TaqI	TCGA	3 cut(s)	177, 692, 868
TasI	AATT	8 cut(s)	105, 267, 531, 640, 715, 919, 956, 1163
TatI	WGTACW	2 cut(s)	797, 1056
TauI	GCSGC	1 cut(s)	1098
TfiI	GAWTC	2 cut(s)	736, 829
Tru1I	TTAA	9 cut(s)	461, 501, 534, 633, 672, 732, 782, 932, 1082
Tru9I	TTAA	9 cut(s)	461, 501, 534, 633, 672, 732, 782, 932, 1082
TscAI	CASTG	2 cut(s)	247, 1194
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	221, 390, 747, 849, 1100
TspRI	CASTG	2 cut(s)	247, 1194
Vha464I	CTTAAG	1 cut(s)	731
XapI	RAATTY	2 cut(s)	715, 956
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	381, 776
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.