Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001767

Physical Location & Seq

Genomic Coordinates Reverse (-)

65415255 .. 65418716

Gene Structure 3462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCTCGTCAACAGCGTTTCTTAGAATCATTTGAAACGAAAATCAGCAAATCTTCCAATTCCAAAAGAAAACCTCACCGTAGATCCAGCACTCCCAGTACTCCCCCGGTCATGAATGTGGACATCCTGCAATACGAGTTTTTATTCAGAACAGAGGATGACCCATATTTTTCTGGAAAGATCACATTCTCTTATAGTGAAGAAAGAGAGGCGAGGTTTTTCCTTGTTAAAGACGATGAGATAGCAATGAAGATATGGGAGGAAAGCTCAAACTTAAGACATGATGCAATTTTAAAGCTTTGGTTTGTCAGCTATTGTGACAAGTTCGAAGGTTGGATTTTGTGCTATGAGAAATTCGACCATCTTCTAACTGAATGGCTAAAGTTAGATGACATCGAAACAAAGATCAGAGATAATGATTTGCTAAATACTGAGTTTAGCCCTTCCATTTGCACACTTATAGAAGGAATCAATTATCTCAACGAGCGTAATCTTTTTCACGGGGGTTTGGACCAAAGCTGCAACTTCGTTGTTATAAATAAGGAGGTGAAAATTATCAATATCGGCAAGCATAGCACTCGTATGGCGGAGATAGATCCTGAGCAAGATCAAGCAGCACAGCTCCTACAACTAACTAATCTGAGGTTGATTGATTTAATGGGAATTAAATCTTTGCTATCCTACATTTTGAATAGCGCTACGCTAGACGCTTGGATTGAACGAGACACTTTTCTCGATTTCTTCGAATTAGCTCGAACATTAAGCTACAGAATGTTCATCTCAATGGTTCTTAGACATCCATATTTGAAGACTAGTGCTGAAGCAAGAGTCAAGACATCTTTCGACATTCTACGCATCAGAGATCGCAATAAGACAAAAAAAGGCATTTTTTATAGTGCTTTGAGGAAAACACAATTTGACATGTATTACCCTTGGGATGATGGTATGAGCGATCGGTTGATAGAAGTTTATAATTATAACCGTCAGGGTTGGAGGTCTAACTACAAAGGTTATAGCAGCAAGTGCCTCCTCATTTTCATAAGGAATGTATATTGGCATCCCAAAACTAGCATGGAGGCATATGATTCTGATATTAGGACTCGATATCCCGATTTTCTTAATCGTGCTTATGAGGCGGCATGCAGAATATTTGCGGTTCAAGTGACGTTACTTATAGATTTGAATATAGAGCAGCAGTATGTACAGAATCAAAATGTTGTACCCAGACGTGACAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGTTGGCGGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

50.68

Weight (kDa)

8.98

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001767)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27671 FvH4_7g27672 FvH4_7g27711
malus_domestica	MD17G1269700.v1.1 MD17G1269800.v1.1
prunus_persica	Prupe.7G190000_v2.0.a1 Prupe.7G190100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378671 RchiOBHm_Chr1g0379081 RchiOBHm_Chr1g0379131 RchiOBHm_Chr1g0379291 RchiOBHm_Chr1g0379311 RchiOBHm_Chr7g0205701 RchiOBHm_Chr7g0219851
rosa_laevigata	RLG00000002639 RLG00000026139 RLG00000026386 RLG00000026770
rosa_multiflora	Rmu_sc0000556.1_g000042 Rmu_sc0000556.1_g000049 Rmu_sc0000556.1_g000056
rosa_roxburghii	Rroxscaffold_1G00038740 Rroxscaffold_3G00244000 Rroxscaffold_3G00252070 Rroxscaffold_4G00277690
rosa_rugosa	Rorug07G0092400 Rorug07G0092400 Rorug07G0092400 Rorug07G0092500 Rorug07G0155600
rosa_samantha	Rh1AG463300 Rh1BG420400 Rh2BG637800 Rh2DG649300 Rh5DG295200 Rh7AG223600 Rh7BG218600 Rh7BG283600 Rh7BG284000 Rh7BG284200 Rh7BG284600 Rh7CG236900 Rh7CG311800 Rh7DG230500 Rh7DG230700 Rh7DG295400
rosa_wichuraiana	Rw1G037930 Rw7G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	536, 972, 978
AciI	CCGC	4 cut(s)	587, 1136, 1154, 1278
AclWI	GGATC	2 cut(s)	78, 590
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	3 cut(s)	100, 1203, 1221
AfeI	AGCGCT	1 cut(s)	697
AflII	CTTAAG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	6 cut(s)	35, 691, 719, 808, 1160, 1183
AhlI	ACTAGT	1 cut(s)	812
AjiI	CACGTC	1 cut(s)	1229
AluBI	AGCT	7 cut(s)	267, 298, 312, 519, 622, 752, 765
AluI	AGCT	7 cut(s)	267, 298, 312, 519, 622, 752, 765
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	78, 590
Aor51HI	AGCGCT	1 cut(s)	697
ApeKI	GCWGC	4 cut(s)	519, 614, 1017, 1192
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	68, 559
AsuII	TTCGAA	2 cut(s)	327, 744
AvaII	GGWCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	815
BbvI	GCAGC	4 cut(s)	506, 626, 1029, 1204
BccI	CCATC	2 cut(s)	369, 935
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	3 cut(s)	704, 813, 1068
BfmI	CTRYAG	1 cut(s)	766
BfoI	RGCGCY	1 cut(s)	699
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	5 cut(s)	520, 615, 1018, 1137, 1193
BlsI	GCNGC	5 cut(s)	521, 616, 1019, 1138, 1194
BmcAI	AGTACT	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	1229
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	3 cut(s)	274, 864, 1066
BmuI	ACTGGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	815
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu14I	TTCGAA	2 cut(s)	327, 744
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	105, 932
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	105, 932
BseGI	GGATG	5 cut(s)	123, 163, 796, 943, 1057
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	423, 591, 632
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	1019
BseXI	GCAGC	4 cut(s)	506, 626, 1029, 1204
Bsh1285I	CGRYCG	1 cut(s)	955
BsiEI	CGRYCG	1 cut(s)	955
BsiSI	CCGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	717
Bsp119I	TTCGAA	2 cut(s)	327, 744
Bsp1407I	TGTACA	1 cut(s)	1201
Bsp143I	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
BspACI	CCGC	4 cut(s)	587, 1136, 1154, 1278
BspCNI	CTCAG	3 cut(s)	424, 592, 633
BspHI	TCATGA	1 cut(s)	111
BspPI	GGATC	2 cut(s)	78, 590
BspT104I	TTCGAA	2 cut(s)	327, 744
BspTI	CTTAAG	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	1201
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	105, 932
BssMI	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
BssT1I	CCWWGG	1 cut(s)	932
Bst4CI	ACNGT	2 cut(s)	80, 983
BstAFI	CTTAAG	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	1023
BstAUI	TGTACA	1 cut(s)	1201
BstBI	TTCGAA	2 cut(s)	327, 744
BstC8I	GCNNGC	2 cut(s)	569, 1141
BstDEI	CTNAG	5 cut(s)	22, 432, 600, 641, 791
BstF5I	GGATG	5 cut(s)	123, 163, 796, 943, 1057
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	7 cut(s)	86, 183, 408, 598, 610, 865, 955
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
BstMCI	CGRYCG	1 cut(s)	955
BstMWI	GCNNNNNNNGC	4 cut(s)	573, 1023, 1133, 1275
BstNSI	RCATGY	2 cut(s)	925, 1143
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	766
BstV1I	GCAGC	4 cut(s)	506, 626, 1029, 1204
BstV2I	GAAGAC	1 cut(s)	815
BstX2I	RGATCY	2 cut(s)	83, 595
BstYI	RGATCY	2 cut(s)	83, 595
BtrI	CACGTC	1 cut(s)	1229
BtsCI	GGATG	5 cut(s)	123, 163, 796, 943, 1057
Cac8I	GCNNGC	2 cut(s)	569, 1141
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	511
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	3 cut(s)	99, 1202, 1220
CviAII	CATG	5 cut(s)	112, 281, 922, 1072, 1140
CviQI	GTAC	3 cut(s)	99, 1202, 1220
DdeI	CTNAG	5 cut(s)	22, 432, 600, 641, 791
DpnI	GATC	7 cut(s)	85, 182, 407, 597, 609, 864, 954
DpnII	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
DraI	TTTAAA	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	932
Eco32I	GATATC	1 cut(s)	1106
Eco47I	GGWCC	1 cut(s)	511
Eco47III	AGCGCT	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	840
EcoRV	GATATC	1 cut(s)	1106
EcoT14I	CCWWGG	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	5 cut(s)	115, 284, 925, 1075, 1143
FatI	CATG	5 cut(s)	111, 280, 921, 1071, 1139
FauNDI	CATATG	1 cut(s)	1081
Fnu4HI	GCNGC	5 cut(s)	520, 615, 1018, 1137, 1193
FokI	GGATG	5 cut(s)	110, 170, 783, 950, 1044
Fsp4HI	GCNGC	5 cut(s)	520, 615, 1018, 1137, 1193
FspBI	CTAG	3 cut(s)	704, 813, 1068
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	5 cut(s)	520, 615, 1018, 1137, 1193
HaeII	RGCGCY	1 cut(s)	699
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	5 cut(s)	115, 284, 925, 1075, 1143
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	6 cut(s)	26, 468, 828, 1085, 1099, 1207
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	68, 559
Hpy166II	GTNNAC	2 cut(s)	11, 121
Hpy188I	TCNGA	5 cut(s)	149, 410, 642, 860, 1090
Hpy188III	TCNNGA	6 cut(s)	112, 174, 599, 734, 832, 1109
Hpy8I	GTNNAC	2 cut(s)	11, 121
HpyAV	CCTTC	3 cut(s)	323, 453, 458
HpyCH4III	ACNGT	2 cut(s)	80, 983
HpyCH4IV	ACGT	2 cut(s)	1166, 1228
HpyCH4V	TGCA	5 cut(s)	130, 287, 453, 522, 1143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	573, 1023, 1133, 1275
HpyF3I	CTNAG	5 cut(s)	22, 432, 600, 641, 791
HpySE526I	ACGT	2 cut(s)	1166, 1228
Hsp92II	CATG	5 cut(s)	115, 284, 925, 1075, 1143
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
LmnI	GCTCC	1 cut(s)	627
LpnPI	CCDG	8 cut(s)	100, 109, 120, 140, 159, 612, 971, 1237
Lsp1109I	GCAGC	4 cut(s)	506, 626, 1029, 1204
LweI	GCATC	3 cut(s)	274, 864, 1066
MaeI	CTAG	3 cut(s)	704, 813, 1068
MaeII	ACGT	2 cut(s)	1166, 1228
MaeIII	GTNAC	4 cut(s)	317, 1162, 1167, 1229
MalI	GATC	7 cut(s)	85, 182, 407, 597, 609, 864, 954
MboI	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
MboII	GAAGA	6 cut(s)	45, 212, 262, 356, 733, 820
MflI	RGATCY	2 cut(s)	83, 595
MluCI	AATT	9 cut(s)	58, 288, 353, 472, 552, 663, 746, 914, 973
MlyI	GAGTC	2 cut(s)	837, 1093
MmeI	TCCRAC	2 cut(s)	314, 971
MseI	TTAA	7 cut(s)	228, 275, 293, 656, 666, 761, 1119
MslI	CAYNNNNRTG	3 cut(s)	116, 581, 782
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	573, 1023, 1133, 1275
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
NlaIII	CATG	5 cut(s)	115, 284, 925, 1075, 1143
NmuCI	GTSAC	3 cut(s)	317, 1162, 1229
NspI	RCATGY	2 cut(s)	925, 1143
NspV	TTCGAA	2 cut(s)	327, 744
PaeI	GCATGC	1 cut(s)	1143
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 741
PfeI	GAWTC	4 cut(s)	26, 468, 1085, 1207
PkrI	GCNGC	5 cut(s)	521, 616, 1019, 1138, 1194
Ple19I	CGATCG	1 cut(s)	955
PleI	GAGTC	2 cut(s)	836, 1093
PpsI	GAGTC	2 cut(s)	836, 1093
PscI	ACATGT	1 cut(s)	921
PsiI	TTATAA	3 cut(s)	536, 972, 978
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	83, 595
PvuI	CGATCG	1 cut(s)	955
RsaI	GTAC	3 cut(s)	100, 1203, 1221
RsaNI	GTAC	3 cut(s)	99, 1202, 1220
RseI	CAYNNNNRTG	3 cut(s)	116, 581, 782
SaqAI	TTAA	7 cut(s)	228, 275, 293, 656, 666, 761, 1119
SatI	GCNGC	5 cut(s)	520, 615, 1018, 1137, 1193
Sau3AI	GATC	7 cut(s)	83, 180, 405, 595, 607, 862, 952
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	2 cut(s)	837, 1093
ScrFI	CCNGG	1 cut(s)	107
SfaNI	GCATC	3 cut(s)	274, 864, 1066
SfcI	CTRYAG	1 cut(s)	766
SfuI	TTCGAA	2 cut(s)	327, 744
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	3 cut(s)	116, 581, 782
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SpeI	ACTAGT	1 cut(s)	812
SphI	GCATGC	1 cut(s)	1143
Sse9I	AATT	9 cut(s)	58, 288, 353, 472, 552, 663, 746, 914, 973
SsiI	CCGC	4 cut(s)	587, 1136, 1154, 1278
SspI	AATATT	1 cut(s)	1149
SspMI	CTAG	3 cut(s)	704, 813, 1068
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	2 cut(s)	80, 983
TaiI	ACGT	2 cut(s)	1169, 1231
TaqI	TCGA	8 cut(s)	327, 357, 396, 735, 744, 754, 843, 1102
TasI	AATT	9 cut(s)	58, 288, 353, 472, 552, 663, 746, 914, 973
TatI	WGTACW	2 cut(s)	98, 1201
TauI	GCSGC	1 cut(s)	1139
TfiI	GAWTC	4 cut(s)	26, 468, 1085, 1207
Tru1I	TTAA	7 cut(s)	228, 275, 293, 656, 666, 761, 1119
Tru9I	TTAA	7 cut(s)	228, 275, 293, 656, 666, 761, 1119
TseFI	GTSAC	3 cut(s)	317, 1162, 1229
TseI	GCWGC	4 cut(s)	519, 614, 1017, 1192
Tsp45I	GTSAC	3 cut(s)	317, 1162, 1229
TspDTI	ATGAA	4 cut(s)	128, 263, 766, 1027
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	925, 1143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1069
XspI	CTAG	3 cut(s)	704, 813, 1068
ZrmI	AGTACT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.